Wall clock time and date at job start Mon Mar 30 2020 01:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86798 * 119.99627 * 2 1 4 4 H 1.48506 * 109.46704 * 239.99919 * 3 2 1 5 5 H 1.48491 * 109.47403 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47201 * 120.00350 * 3 2 1 7 7 C 1.40237 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00398 * 197.85913 * 7 2 1 9 9 C 1.41102 * 119.99900 * 17.86717 * 7 2 1 10 10 C 1.40896 * 120.09611 * 204.63933 * 9 7 2 11 11 C 1.36299 * 119.89570 * 180.02562 * 10 9 7 12 12 C 1.40066 * 120.10334 * 359.97438 * 11 10 9 13 13 C 1.47510 * 119.90490 * 179.97438 * 12 11 10 14 14 O 1.21506 * 119.99690 * 0.02562 * 13 12 11 15 15 O 1.34769 * 120.00295 * 179.97438 * 13 12 11 16 16 C 1.45195 * 117.00202 * 179.97438 * 15 13 12 17 17 C 1.53005 * 109.47347 * 180.02562 * 16 15 13 18 18 H 1.09003 * 110.27203 * 55.63850 * 17 16 15 19 19 C 1.54950 * 110.31052 * 177.83346 * 17 16 15 20 20 C 1.55305 * 100.93872 * 155.36099 * 19 17 16 21 21 C 1.54380 * 102.25296 * 325.86480 * 20 19 17 22 22 O 1.43239 * 107.58853 * 21.36141 * 21 20 19 23 23 C 1.40066 * 120.19698 * 0.25781 * 12 11 10 24 24 C 1.36308 * 120.10329 * 359.48627 * 23 12 11 25 25 H 0.96999 * 120.00197 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.05351 * 359.97438 * 10 9 7 27 27 H 1.07999 * 119.95360 * 180.02562 * 11 10 9 28 28 H 1.09001 * 109.47623 * 300.00381 * 16 15 13 29 29 H 1.08999 * 109.47246 * 60.00584 * 16 15 13 30 30 H 1.08996 * 111.12749 * 273.28196 * 19 17 16 31 31 H 1.09006 * 111.12027 * 37.44525 * 19 17 16 32 32 H 1.09001 * 110.84350 * 207.68143 * 20 19 17 33 33 H 1.08997 * 110.84942 * 84.06236 * 20 19 17 34 34 H 1.08993 * 109.83739 * 261.84130 * 21 20 19 35 35 H 1.09008 * 109.82704 * 140.86890 * 21 20 19 36 36 H 1.08003 * 119.95283 * 179.74353 * 23 12 11 37 37 H 1.07992 * 120.05429 * 180.23268 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0940 1.6964 -1.2126 5 1 1.2753 2.7464 -0.0006 6 1 3.0941 1.6965 1.2125 7 6 2.0076 -1.2145 0.0005 8 1 3.0485 -1.2369 0.2874 9 6 1.3531 -2.4072 -0.3738 10 6 1.8268 -3.6494 0.0927 11 6 1.1918 -4.7990 -0.2720 12 6 0.0697 -4.7467 -1.1086 13 6 -0.6138 -5.9936 -1.5010 14 8 -0.2035 -7.0640 -1.0980 15 8 -1.6940 -5.9456 -2.3055 16 6 -2.3155 -7.2115 -2.6508 17 6 -3.5164 -6.9577 -3.5643 18 1 -3.2096 -6.3892 -4.4423 19 6 -4.1622 -8.3006 -3.9893 20 6 -5.6128 -7.8435 -4.3038 21 6 -5.8351 -6.7219 -3.2665 22 8 -4.5462 -6.2556 -2.8504 23 6 -0.4018 -3.5144 -1.5787 24 6 0.2238 -2.3593 -1.2150 25 1 -0.4850 0.8400 0.0004 26 1 2.6922 -3.6907 0.7374 27 1 1.5539 -5.7517 0.0854 28 1 -1.5926 -7.8421 -3.1685 29 1 -2.6493 -7.7123 -1.7421 30 1 -3.6770 -8.7064 -4.8769 31 1 -4.1459 -9.0206 -3.1710 32 1 -6.3186 -8.6597 -4.1497 33 1 -5.6850 -7.4531 -5.3189 34 1 -6.3810 -7.1143 -2.4087 35 1 -6.3953 -5.9043 -3.7203 36 1 -1.2649 -3.4790 -2.2270 37 1 -0.1427 -1.4093 -1.5749 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758677860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:12 Heat of formation + Delta-G solvation = -127.111975 kcal Electronic energy + Delta-G solvation = -20393.690633 eV Core-core repulsion = 17100.153119 eV Total energy + Delta-G solvation = -3293.537514 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.84647 -39.11391 -37.38286 -35.53548 -33.91562 -32.36286 -31.07660 -30.13055 -29.46806 -26.50919 -25.35910 -22.45377 -21.79113 -21.23699 -20.89875 -19.83644 -17.52992 -17.19301 -16.81691 -16.33558 -15.74608 -15.52012 -15.33954 -14.63956 -14.03894 -13.78608 -13.45288 -13.27072 -12.88776 -12.59462 -12.28962 -12.06175 -11.96056 -11.74495 -11.55039 -11.47008 -11.35376 -11.26344 -11.02914 -10.99482 -10.66500 -10.11168 -10.10435 -9.58327 -9.56395 -9.39776 -9.32843 -7.71655 -7.60518 -7.06308 -4.64691 2.10127 2.89857 2.93915 2.97076 3.06697 3.33977 3.66299 3.71307 3.73536 4.24206 4.50120 4.60092 4.69509 4.99599 5.02561 5.19217 5.37962 5.44629 5.49726 5.54780 5.57015 5.65062 5.75913 5.92177 6.11559 6.25302 6.30651 6.77369 6.83505 6.95561 7.02609 7.08787 7.16512 7.44925 7.70907 7.81622 7.87581 8.03826 8.38635 8.59512 8.72960 8.79672 9.84904 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.027776 B = 0.003528 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.838309 B = 7935.400671 C = 8771.169803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.073 3.927 3 Si 0.916 3.084 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.436 4.436 8 H 0.087 0.913 9 C 0.132 3.868 10 C -0.240 4.240 11 C -0.018 4.018 12 C -0.274 4.274 13 C 0.515 3.485 14 O -0.556 6.556 15 O -0.352 6.352 16 C 0.070 3.930 17 C 0.083 3.917 18 H 0.082 0.918 19 C -0.149 4.149 20 C -0.154 4.154 21 C 0.047 3.953 22 O -0.368 6.368 23 C -0.041 4.041 24 C -0.185 4.185 25 H 0.289 0.711 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.312 -7.718 -7.590 13.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.150 4.150 3 Si 0.739 3.261 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.463 4.463 8 H 0.105 0.895 9 C 0.128 3.872 10 C -0.259 4.259 11 C -0.037 4.037 12 C -0.277 4.277 13 C 0.367 3.633 14 O -0.451 6.451 15 O -0.269 6.269 16 C -0.005 4.005 17 C 0.026 3.974 18 H 0.100 0.900 19 C -0.187 4.187 20 C -0.192 4.192 21 C -0.030 4.030 22 O -0.287 6.287 23 C -0.060 4.060 24 C -0.204 4.204 25 H 0.101 0.899 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.413 -7.710 -7.321 13.558 hybrid contribution 0.134 0.383 -0.080 0.414 sum -8.278 -7.327 -7.400 13.303 Atomic orbital electron populations 1.69739 1.07976 1.30425 1.30461 1.26153 0.94845 1.02036 0.91921 0.86222 0.80191 0.79267 0.80386 1.18393 1.19961 1.18601 1.19887 0.98447 0.91194 1.36792 0.89540 1.17843 0.90311 0.92158 0.86850 1.20675 1.04717 0.92463 1.08082 1.20344 0.92536 0.97377 0.93412 1.18224 1.04382 0.89322 1.15736 1.21593 0.76944 0.90192 0.74529 1.90682 1.66323 1.32222 1.55827 1.86638 1.43012 1.33898 1.63356 1.22969 0.93003 0.85416 0.99083 1.23042 0.87790 0.92148 0.94466 0.90013 1.23248 0.95473 0.97274 1.02708 1.23114 0.96891 0.98986 1.00192 1.23145 0.86502 0.96197 0.97141 1.88583 1.13702 1.62236 1.64169 1.20671 0.97026 0.91900 0.96410 1.21011 1.00059 0.97062 1.02309 0.89943 0.88091 0.87991 0.90533 0.91182 0.89400 0.89896 0.89896 0.90349 0.91358 0.91351 0.87936 0.86047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.45 10.95 55.56 0.61 -17.84 16 2 C 0.07 1.70 5.14 -17.31 -0.09 1.61 16 3 Si 0.92 17.18 29.60 -169.99 -5.03 12.15 16 4 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 5 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 6 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 7 C -0.44 -10.83 9.04 -37.75 -0.34 -11.17 16 8 H 0.09 2.02 7.91 -52.49 -0.42 1.61 16 9 C 0.13 3.40 5.58 -106.80 -0.60 2.80 16 10 C -0.24 -5.85 9.73 -39.27 -0.38 -6.23 16 11 C -0.02 -0.43 9.52 -39.59 -0.38 -0.81 16 12 C -0.27 -6.69 5.89 -104.75 -0.62 -7.31 16 13 C 0.51 11.91 7.89 34.51 0.27 12.18 16 14 O -0.56 -13.42 16.11 -19.27 -0.31 -13.73 16 15 O -0.35 -7.25 9.44 -42.50 -0.40 -7.65 16 16 C 0.07 1.12 5.18 37.16 0.19 1.31 16 17 C 0.08 1.09 3.74 -25.70 -0.10 0.99 16 18 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 19 C -0.15 -1.35 6.57 -24.48 -0.16 -1.51 16 20 C -0.15 -1.21 7.02 -24.79 -0.17 -1.38 16 21 C 0.05 0.49 7.79 37.88 0.30 0.79 16 22 O -0.37 -5.56 11.04 -36.00 -0.40 -5.96 16 23 C -0.04 -1.00 9.55 -39.59 -0.38 -1.38 16 24 C -0.19 -4.72 8.63 -39.27 -0.34 -5.05 16 25 H 0.29 6.28 8.29 -40.82 -0.34 5.94 16 26 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 27 H 0.10 2.32 7.63 -52.49 -0.40 1.92 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.72 8.06 -51.93 -0.42 0.31 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 36 H 0.10 2.32 7.59 -52.48 -0.40 1.92 16 37 H 0.12 3.11 6.15 -52.49 -0.32 2.79 16 LS Contribution 318.54 15.07 4.80 4.80 Total: -1.00 -29.29 318.54 -8.41 -37.71 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -4.89 Total: 5.70 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -2.79 Total: -15.17 kcal Atomic # 7 Polarization: -18.45 SS G_CDS: 0.61 Total: -17.84 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -1.11 Total: -27.34 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.15 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.29 -8.41 -37.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758677860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.405 kcal (2) G-P(sol) polarization free energy of solvation -29.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds