Wall clock time and date at job start Mon Mar 30 2020 01:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86798 * 119.99627 * 2 1 4 4 H 1.48506 * 109.46704 * 239.99919 * 3 2 1 5 5 H 1.48491 * 109.47403 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47201 * 120.00350 * 3 2 1 7 7 C 1.40237 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00398 * 197.85913 * 7 2 1 9 9 C 1.41102 * 119.99900 * 17.86717 * 7 2 1 10 10 C 1.40896 * 120.09611 * 204.63933 * 9 7 2 11 11 C 1.36299 * 119.89570 * 180.02562 * 10 9 7 12 12 C 1.40066 * 120.10334 * 359.97438 * 11 10 9 13 13 C 1.47510 * 119.90490 * 179.97438 * 12 11 10 14 14 O 1.21506 * 119.99690 * 0.02562 * 13 12 11 15 15 O 1.34769 * 120.00295 * 179.97438 * 13 12 11 16 16 C 1.45195 * 117.00202 * 179.97438 * 15 13 12 17 17 C 1.53005 * 109.47347 * 180.02562 * 16 15 13 18 18 H 1.09003 * 110.27203 * 55.63850 * 17 16 15 19 19 C 1.54950 * 110.31052 * 177.83346 * 17 16 15 20 20 C 1.55305 * 100.93872 * 155.36099 * 19 17 16 21 21 C 1.54380 * 102.25296 * 325.86480 * 20 19 17 22 22 O 1.43239 * 107.58853 * 21.36141 * 21 20 19 23 23 C 1.40066 * 120.19698 * 0.25781 * 12 11 10 24 24 C 1.36308 * 120.10329 * 359.48627 * 23 12 11 25 25 H 0.96999 * 120.00197 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.05351 * 359.97438 * 10 9 7 27 27 H 1.07999 * 119.95360 * 180.02562 * 11 10 9 28 28 H 1.09001 * 109.47623 * 300.00381 * 16 15 13 29 29 H 1.08999 * 109.47246 * 60.00584 * 16 15 13 30 30 H 1.08996 * 111.12749 * 273.28196 * 19 17 16 31 31 H 1.09006 * 111.12027 * 37.44525 * 19 17 16 32 32 H 1.09001 * 110.84350 * 207.68143 * 20 19 17 33 33 H 1.08997 * 110.84942 * 84.06236 * 20 19 17 34 34 H 1.08993 * 109.83739 * 261.84130 * 21 20 19 35 35 H 1.09008 * 109.82704 * 140.86890 * 21 20 19 36 36 H 1.08003 * 119.95283 * 179.74353 * 23 12 11 37 37 H 1.07992 * 120.05429 * 180.23268 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0940 1.6964 -1.2126 5 1 1.2753 2.7464 -0.0006 6 1 3.0941 1.6965 1.2125 7 6 2.0076 -1.2145 0.0005 8 1 3.0485 -1.2369 0.2874 9 6 1.3531 -2.4072 -0.3738 10 6 1.8268 -3.6494 0.0927 11 6 1.1918 -4.7990 -0.2720 12 6 0.0697 -4.7467 -1.1086 13 6 -0.6138 -5.9936 -1.5010 14 8 -0.2035 -7.0640 -1.0980 15 8 -1.6940 -5.9456 -2.3055 16 6 -2.3155 -7.2115 -2.6508 17 6 -3.5164 -6.9577 -3.5643 18 1 -3.2096 -6.3892 -4.4423 19 6 -4.1622 -8.3006 -3.9893 20 6 -5.6128 -7.8435 -4.3038 21 6 -5.8351 -6.7219 -3.2665 22 8 -4.5462 -6.2556 -2.8504 23 6 -0.4018 -3.5144 -1.5787 24 6 0.2238 -2.3593 -1.2150 25 1 -0.4850 0.8400 0.0004 26 1 2.6922 -3.6907 0.7374 27 1 1.5539 -5.7517 0.0854 28 1 -1.5926 -7.8421 -3.1685 29 1 -2.6493 -7.7123 -1.7421 30 1 -3.6770 -8.7064 -4.8769 31 1 -4.1459 -9.0206 -3.1710 32 1 -6.3186 -8.6597 -4.1497 33 1 -5.6850 -7.4531 -5.3189 34 1 -6.3810 -7.1143 -2.4087 35 1 -6.3953 -5.9043 -3.7203 36 1 -1.2649 -3.4790 -2.2270 37 1 -0.1427 -1.4093 -1.5749 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758677860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:11 Heat of formation + Delta-G solvation = -142.390676 kcal Electronic energy + Delta-G solvation = -20394.353167 eV Core-core repulsion = 17100.153119 eV Total energy + Delta-G solvation = -3294.200048 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.34390 -40.31509 -39.22180 -37.23588 -35.75297 -33.25401 -32.43996 -31.66396 -31.38265 -28.16882 -26.63879 -24.12385 -22.85428 -22.61344 -22.27310 -21.58526 -19.40587 -18.57870 -18.22394 -17.85768 -17.16241 -16.88516 -16.71905 -15.82512 -15.72199 -15.27947 -15.00455 -14.57814 -14.33046 -13.99878 -13.96409 -13.73882 -13.34153 -13.13679 -12.87321 -12.70645 -12.68326 -12.50021 -12.36218 -12.28733 -11.83593 -11.73572 -11.62588 -11.42970 -11.22796 -11.12029 -10.54140 -9.64237 -9.53994 -8.84630 -6.55649 0.23436 1.12825 1.37637 1.42605 1.53895 1.84924 1.89054 2.15387 2.67786 2.78263 3.47811 3.61801 3.66960 3.92159 4.02724 4.12817 4.19920 4.34623 4.37329 4.39491 4.42445 4.51464 4.80284 4.85790 4.91785 4.92584 4.97284 4.99635 5.11346 5.21071 5.22318 5.41960 5.55254 5.80851 5.90390 5.95948 6.06127 6.14077 6.48452 6.69528 6.81553 7.01274 8.09971 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.027776 B = 0.003528 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.838309 B = 7935.400671 C = 8771.169803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.034 3.966 3 Si 0.993 3.007 4 H -0.256 1.256 5 H -0.265 1.265 6 H -0.255 1.255 7 C -0.458 4.458 8 H 0.095 0.905 9 C 0.105 3.895 10 C -0.250 4.250 11 C -0.022 4.022 12 C -0.294 4.294 13 C 0.518 3.482 14 O -0.571 6.571 15 O -0.360 6.360 16 C 0.062 3.938 17 C 0.080 3.920 18 H 0.084 0.916 19 C -0.141 4.141 20 C -0.143 4.143 21 C 0.035 3.965 22 O -0.409 6.409 23 C -0.040 4.040 24 C -0.203 4.203 25 H 0.300 0.700 26 H 0.116 0.884 27 H 0.112 0.888 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.677 -7.664 -8.418 14.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.186 4.186 3 Si 0.812 3.188 4 H -0.180 1.180 5 H -0.189 1.189 6 H -0.179 1.179 7 C -0.485 4.485 8 H 0.113 0.887 9 C 0.102 3.898 10 C -0.269 4.269 11 C -0.041 4.041 12 C -0.296 4.296 13 C 0.371 3.629 14 O -0.467 6.467 15 O -0.277 6.277 16 C -0.012 4.012 17 C 0.022 3.978 18 H 0.101 0.899 19 C -0.179 4.179 20 C -0.181 4.181 21 C -0.041 4.041 22 O -0.329 6.329 23 C -0.059 4.059 24 C -0.222 4.222 25 H 0.111 0.889 26 H 0.134 0.866 27 H 0.130 0.870 28 H 0.110 0.890 29 H 0.082 0.918 30 H 0.130 0.870 31 H 0.104 0.896 32 H 0.125 0.875 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.130 0.870 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.807 -7.679 -8.158 14.251 hybrid contribution 0.154 0.345 0.184 0.421 sum -8.652 -7.334 -7.974 13.865 Atomic orbital electron populations 1.69772 1.09551 1.32113 1.29974 1.27083 0.95540 1.05275 0.90694 0.85069 0.78767 0.74414 0.80521 1.18041 1.18879 1.17853 1.20246 0.99038 0.91933 1.37237 0.88675 1.18194 0.90875 0.93258 0.87508 1.20874 1.05345 0.92230 1.08429 1.20507 0.92502 0.97771 0.93277 1.18472 1.04931 0.90058 1.16161 1.21363 0.77413 0.89460 0.74669 1.90655 1.66974 1.32507 1.56547 1.86608 1.42018 1.36664 1.62411 1.23405 0.94326 0.83784 0.99679 1.23176 0.86667 0.94607 0.93319 0.89862 1.23274 0.95913 0.94952 1.03724 1.23118 0.96432 0.98606 0.99912 1.23406 0.84758 0.97575 0.98402 1.88535 1.15713 1.63461 1.65221 1.20757 0.97101 0.91727 0.96294 1.21009 1.00858 0.97055 1.03263 0.88878 0.86585 0.86952 0.88984 0.91812 0.87016 0.89590 0.87522 0.89050 0.90823 0.90717 0.86994 0.86828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.28 10.95 21.87 0.24 -38.04 16 2 C 0.03 1.58 5.14 85.36 0.44 2.02 16 3 Si 0.99 34.17 29.60 68.60 2.03 36.20 16 4 H -0.26 -8.65 7.11 99.48 0.71 -7.95 16 5 H -0.26 -8.60 7.11 99.48 0.71 -7.90 16 6 H -0.25 -8.45 7.11 99.48 0.71 -7.74 16 7 C -0.46 -22.83 9.04 23.46 0.21 -22.62 16 8 H 0.10 4.42 7.91 -2.91 -0.02 4.40 16 9 C 0.11 5.52 5.58 -21.27 -0.12 5.40 16 10 C -0.25 -12.33 9.73 22.47 0.22 -12.11 16 11 C -0.02 -1.07 9.52 22.26 0.21 -0.86 16 12 C -0.29 -14.59 5.89 -19.95 -0.12 -14.71 16 13 C 0.52 24.25 7.89 70.27 0.55 24.80 16 14 O -0.57 -27.66 16.11 19.82 0.32 -27.34 16 15 O -0.36 -14.99 9.44 -55.06 -0.52 -15.51 16 16 C 0.06 1.96 5.18 71.98 0.37 2.33 16 17 C 0.08 2.01 3.74 31.26 0.12 2.12 16 18 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 19 C -0.14 -2.19 6.57 32.05 0.21 -1.98 16 20 C -0.14 -1.83 7.02 31.85 0.22 -1.61 16 21 C 0.03 0.68 7.79 72.45 0.56 1.24 16 22 O -0.41 -12.27 11.04 -148.25 -1.64 -13.91 16 23 C -0.04 -1.99 9.55 22.26 0.21 -1.78 16 24 C -0.20 -10.59 8.63 22.47 0.19 -10.39 16 25 H 0.30 12.89 8.29 -92.71 -0.77 12.12 16 26 H 0.12 5.21 8.06 -2.91 -0.02 5.19 16 27 H 0.11 5.14 7.63 -2.91 -0.02 5.12 16 28 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.11 1.22 8.14 -2.39 -0.02 1.21 16 31 H 0.09 1.30 8.06 -2.38 -0.02 1.28 16 32 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 1.32 8.14 -2.38 -0.02 1.31 16 36 H 0.11 5.20 7.59 -2.91 -0.02 5.18 16 37 H 0.11 6.00 6.15 -2.91 -0.02 5.98 16 Total: -1.00 -63.57 318.54 4.80 -58.77 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: 1.07 Total: 27.95 kcal Atomic # 6 Polarization: -31.43 SS G_CDS: 3.29 Total: -28.13 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.24 Total: -38.04 kcal Atomic # 8 Polarization: -54.92 SS G_CDS: -1.84 Total: -56.76 kcal Atomic # 14 Polarization: 34.17 SS G_CDS: 2.03 Total: 36.20 kcal Total: -63.57 4.80 -58.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758677860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.616 kcal (2) G-P(sol) polarization free energy of solvation -63.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds