Wall clock time and date at job start Mon Mar 30 2020 01:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86800 * 120.00100 * 2 1 4 4 H 1.48503 * 109.46936 * 269.99788 * 3 2 1 5 5 H 1.48492 * 109.47013 * 29.99838 * 3 2 1 6 6 H 1.48499 * 109.47112 * 150.00359 * 3 2 1 7 7 C 1.40247 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00252 * 197.83900 * 7 2 1 9 9 C 1.41098 * 119.99929 * 17.83377 * 7 2 1 10 10 C 1.40901 * 120.09892 * 24.59680 * 9 7 2 11 11 C 1.36297 * 119.89720 * 180.02562 * 10 9 7 12 12 C 1.40064 * 120.09985 * 0.02562 * 11 10 9 13 13 C 1.47511 * 119.89862 * 179.97438 * 12 11 10 14 14 O 1.21505 * 120.00403 * 0.02562 * 13 12 11 15 15 O 1.34782 * 119.99868 * 180.02562 * 13 12 11 16 16 C 1.45204 * 116.99755 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.46857 * 179.97438 * 16 15 13 18 18 H 1.09001 * 109.82536 * 305.57157 * 17 16 15 19 19 C 1.54383 * 109.82855 * 184.58923 * 17 16 15 20 20 C 1.55308 * 102.25218 * 219.13046 * 19 17 16 21 21 C 1.54949 * 100.94014 * 34.13475 * 20 19 17 22 22 O 1.43237 * 109.82682 * 66.45776 * 17 16 15 23 23 C 1.40071 * 120.20123 * 0.02562 * 12 11 10 24 24 C 1.36298 * 120.09965 * 359.97438 * 23 12 11 25 25 H 0.96995 * 119.99493 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.04795 * 0.27289 * 10 9 7 27 27 H 1.07995 * 119.95069 * 180.02562 * 11 10 9 28 28 H 1.08998 * 109.47322 * 300.00382 * 16 15 13 29 29 H 1.09000 * 109.46598 * 60.00665 * 16 15 13 30 30 H 1.08999 * 110.84739 * 337.32382 * 19 17 16 31 31 H 1.08994 * 110.84654 * 100.94527 * 19 17 16 32 32 H 1.08999 * 111.12714 * 276.21394 * 20 19 17 33 33 H 1.08997 * 111.15908 * 152.06237 * 20 19 17 34 34 H 1.08999 * 110.30924 * 204.63914 * 21 20 19 35 35 H 1.08998 * 110.39628 * 82.51289 * 21 20 19 36 36 H 1.07997 * 119.94881 * 179.97438 * 23 12 11 37 37 H 1.07997 * 120.04676 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4879 2.0463 -1.4001 5 1 1.4379 2.6526 0.7000 6 1 3.5380 1.4401 0.7000 7 6 2.0076 -1.2146 -0.0005 8 1 3.0487 -1.2372 0.2860 9 6 1.3529 -2.4070 -0.3753 10 6 0.2228 -2.3586 -1.2154 11 6 -0.4067 -3.5129 -1.5745 12 6 0.0678 -4.7459 -1.1091 13 6 -0.6173 -5.9924 -1.5000 14 8 -1.5914 -5.9487 -2.2250 15 8 -0.1627 -7.1799 -1.0530 16 6 -0.8864 -8.3649 -1.4775 17 6 -0.2279 -9.6077 -0.8753 18 1 0.8317 -9.6252 -1.1308 19 6 -0.9192 -10.8792 -1.4127 20 6 -0.9559 -11.7907 -0.1558 21 6 -1.1530 -10.7387 0.9647 22 8 -0.3843 -9.5988 0.5485 23 6 1.1903 -4.7987 -0.2729 24 6 1.8261 -3.6494 0.0912 25 1 -0.4849 0.8400 -0.0004 26 1 -0.1416 -1.4086 -1.5776 27 1 -1.2727 -3.4769 -2.2187 28 1 -1.9202 -8.3004 -1.1380 29 1 -0.8648 -8.4336 -2.5651 30 1 -1.9281 -10.6552 -1.7591 31 1 -0.3280 -11.3363 -2.2061 32 1 -0.0146 -12.3259 -0.0309 33 1 -1.7965 -12.4833 -0.1965 34 1 -0.7780 -11.1219 1.9137 35 1 -2.2061 -10.4723 1.0547 36 1 1.5524 -5.7515 0.0838 37 1 2.6912 -3.6911 0.7364 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758677988.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:14 Heat of formation + Delta-G solvation = -127.421892 kcal Electronic energy + Delta-G solvation = -20366.296137 eV Core-core repulsion = 17072.745184 eV Total energy + Delta-G solvation = -3293.550953 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.89344 -39.11218 -37.37839 -35.51061 -33.92977 -32.38624 -30.99626 -30.12186 -29.50803 -26.51834 -25.38867 -22.47110 -21.84642 -21.20307 -20.92991 -19.75083 -17.55790 -17.22958 -16.88669 -16.25602 -15.90759 -15.42734 -15.37186 -14.46721 -14.01268 -13.74403 -13.59488 -13.30452 -12.94197 -12.48348 -12.21679 -12.16357 -11.97121 -11.80523 -11.61566 -11.41729 -11.35006 -11.25258 -11.07321 -10.95914 -10.66602 -10.10456 -10.08690 -9.63308 -9.53284 -9.39328 -9.35871 -7.71624 -7.60568 -7.06474 -4.64671 2.09991 2.89124 2.94828 2.97674 3.06709 3.32547 3.67199 3.73092 3.76291 4.22936 4.50070 4.57536 4.67307 4.96241 5.02087 5.20305 5.39662 5.45086 5.46969 5.51218 5.55596 5.61136 5.74070 5.94367 6.09057 6.26605 6.29968 6.77490 6.84317 6.93035 7.03576 7.09453 7.18177 7.44812 7.65652 7.82204 7.90524 8.04280 8.39134 8.59616 8.72456 8.80454 9.84936 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.044934 B = 0.003171 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.984243 B = 8829.154439 C = 9159.130351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.072 3.928 3 Si 0.916 3.084 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.436 4.436 8 H 0.087 0.913 9 C 0.131 3.869 10 C -0.185 4.185 11 C -0.033 4.033 12 C -0.274 4.274 13 C 0.513 3.487 14 O -0.554 6.554 15 O -0.352 6.352 16 C 0.059 3.941 17 C 0.083 3.917 18 H 0.091 0.909 19 C -0.149 4.149 20 C -0.155 4.155 21 C 0.045 3.955 22 O -0.366 6.366 23 C -0.026 4.026 24 C -0.240 4.240 25 H 0.289 0.711 26 H 0.123 0.877 27 H 0.101 0.899 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.104 0.896 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.505 -14.482 -0.567 14.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.150 4.150 3 Si 0.740 3.260 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.463 4.463 8 H 0.105 0.895 9 C 0.128 3.872 10 C -0.204 4.204 11 C -0.052 4.052 12 C -0.276 4.276 13 C 0.366 3.634 14 O -0.449 6.449 15 O -0.270 6.270 16 C -0.016 4.016 17 C 0.025 3.975 18 H 0.109 0.891 19 C -0.186 4.186 20 C -0.193 4.193 21 C -0.032 4.032 22 O -0.285 6.285 23 C -0.045 4.045 24 C -0.259 4.259 25 H 0.100 0.900 26 H 0.140 0.860 27 H 0.119 0.881 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.122 0.878 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.918 -14.183 -0.609 14.225 hybrid contribution -0.045 0.495 -0.178 0.528 sum -0.962 -13.688 -0.787 13.744 Atomic orbital electron populations 1.69749 1.07998 1.30316 1.30613 1.26165 0.94844 1.02072 0.91917 0.86165 0.80532 0.79618 0.79725 1.18841 1.19942 1.18202 1.19925 0.98467 0.91179 1.36725 0.89472 1.17850 0.90270 0.92243 0.86834 1.20972 1.00098 0.96831 1.02478 1.20455 0.97130 0.91218 0.96394 1.18237 1.04638 0.88770 1.15960 1.21619 0.81740 0.83388 0.76660 1.90686 1.28270 1.87679 1.38218 1.86631 1.55989 1.14824 1.69535 1.23259 0.96085 0.83336 0.98940 1.22811 1.00506 0.92603 0.81585 0.89068 1.23110 1.02163 0.94556 0.98791 1.23268 1.03207 0.98297 0.94482 1.23425 0.96236 0.85559 0.97934 1.88590 1.73585 1.45683 1.20615 1.20571 0.93006 0.97358 0.93576 1.20719 1.04675 0.92619 1.07912 0.90006 0.85951 0.88084 0.91504 0.90885 0.90034 0.89427 0.90171 0.89807 0.89641 0.92238 0.87834 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.60 10.95 55.56 0.61 -17.99 16 2 C 0.07 1.69 5.14 -17.31 -0.09 1.61 16 3 Si 0.92 17.26 29.60 -169.99 -5.03 12.23 16 4 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 5 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 6 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 7 C -0.44 -10.84 9.04 -37.74 -0.34 -11.18 16 8 H 0.09 2.05 7.91 -52.49 -0.42 1.63 16 9 C 0.13 3.39 5.58 -106.80 -0.60 2.80 16 10 C -0.18 -4.77 8.63 -39.27 -0.34 -5.11 16 11 C -0.03 -0.83 9.52 -39.60 -0.38 -1.21 16 12 C -0.27 -6.69 5.89 -104.75 -0.62 -7.30 16 13 C 0.51 11.92 7.89 34.51 0.27 12.19 16 14 O -0.55 -13.59 16.11 -19.27 -0.31 -13.90 16 15 O -0.35 -7.18 9.44 -42.86 -0.40 -7.58 16 16 C 0.06 0.93 5.01 37.16 0.19 1.12 16 17 C 0.08 1.05 3.82 -26.01 -0.10 0.95 16 18 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 19 C -0.15 -1.30 6.54 -24.78 -0.16 -1.46 16 20 C -0.15 -1.18 7.16 -24.48 -0.18 -1.36 16 21 C 0.05 0.46 7.78 38.19 0.30 0.75 16 22 O -0.37 -5.34 11.01 -36.72 -0.40 -5.75 16 23 C -0.03 -0.62 9.55 -39.59 -0.38 -1.00 16 24 C -0.24 -5.78 9.73 -39.27 -0.38 -6.16 16 25 H 0.29 6.30 8.29 -40.82 -0.34 5.96 16 26 H 0.12 3.18 6.16 -52.48 -0.32 2.86 16 27 H 0.10 2.45 7.63 -52.49 -0.40 2.05 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.08 0.68 7.85 -51.93 -0.41 0.27 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.10 2.20 7.59 -52.49 -0.40 1.81 16 37 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 LS Contribution 318.30 15.07 4.80 4.80 Total: -1.00 -29.48 318.30 -8.43 -37.91 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -4.88 Total: 5.63 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -2.80 Total: -15.36 kcal Atomic # 7 Polarization: -18.60 SS G_CDS: 0.61 Total: -17.99 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -1.12 Total: -27.22 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.03 Total: 12.23 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.48 -8.43 -37.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758677988.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.510 kcal (2) G-P(sol) polarization free energy of solvation -29.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds