Wall clock time and date at job start Mon Mar 30 2020 01:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86800 * 120.00100 * 2 1 4 4 H 1.48503 * 109.46936 * 269.99788 * 3 2 1 5 5 H 1.48492 * 109.47013 * 29.99838 * 3 2 1 6 6 H 1.48499 * 109.47112 * 150.00359 * 3 2 1 7 7 C 1.40247 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00252 * 197.83900 * 7 2 1 9 9 C 1.41098 * 119.99929 * 17.83377 * 7 2 1 10 10 C 1.40901 * 120.09892 * 24.59680 * 9 7 2 11 11 C 1.36297 * 119.89720 * 180.02562 * 10 9 7 12 12 C 1.40064 * 120.09985 * 0.02562 * 11 10 9 13 13 C 1.47511 * 119.89862 * 179.97438 * 12 11 10 14 14 O 1.21505 * 120.00403 * 0.02562 * 13 12 11 15 15 O 1.34782 * 119.99868 * 180.02562 * 13 12 11 16 16 C 1.45204 * 116.99755 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.46857 * 179.97438 * 16 15 13 18 18 H 1.09001 * 109.82536 * 305.57157 * 17 16 15 19 19 C 1.54383 * 109.82855 * 184.58923 * 17 16 15 20 20 C 1.55308 * 102.25218 * 219.13046 * 19 17 16 21 21 C 1.54949 * 100.94014 * 34.13475 * 20 19 17 22 22 O 1.43237 * 109.82682 * 66.45776 * 17 16 15 23 23 C 1.40071 * 120.20123 * 0.02562 * 12 11 10 24 24 C 1.36298 * 120.09965 * 359.97438 * 23 12 11 25 25 H 0.96995 * 119.99493 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.04795 * 0.27289 * 10 9 7 27 27 H 1.07995 * 119.95069 * 180.02562 * 11 10 9 28 28 H 1.08998 * 109.47322 * 300.00382 * 16 15 13 29 29 H 1.09000 * 109.46598 * 60.00665 * 16 15 13 30 30 H 1.08999 * 110.84739 * 337.32382 * 19 17 16 31 31 H 1.08994 * 110.84654 * 100.94527 * 19 17 16 32 32 H 1.08999 * 111.12714 * 276.21394 * 20 19 17 33 33 H 1.08997 * 111.15908 * 152.06237 * 20 19 17 34 34 H 1.08999 * 110.30924 * 204.63914 * 21 20 19 35 35 H 1.08998 * 110.39628 * 82.51289 * 21 20 19 36 36 H 1.07997 * 119.94881 * 179.97438 * 23 12 11 37 37 H 1.07997 * 120.04676 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4879 2.0463 -1.4001 5 1 1.4379 2.6526 0.7000 6 1 3.5380 1.4401 0.7000 7 6 2.0076 -1.2146 -0.0005 8 1 3.0487 -1.2372 0.2860 9 6 1.3529 -2.4070 -0.3753 10 6 0.2228 -2.3586 -1.2154 11 6 -0.4067 -3.5129 -1.5745 12 6 0.0678 -4.7459 -1.1091 13 6 -0.6173 -5.9924 -1.5000 14 8 -1.5914 -5.9487 -2.2250 15 8 -0.1627 -7.1799 -1.0530 16 6 -0.8864 -8.3649 -1.4775 17 6 -0.2279 -9.6077 -0.8753 18 1 0.8317 -9.6252 -1.1308 19 6 -0.9192 -10.8792 -1.4127 20 6 -0.9559 -11.7907 -0.1558 21 6 -1.1530 -10.7387 0.9647 22 8 -0.3843 -9.5988 0.5485 23 6 1.1903 -4.7987 -0.2729 24 6 1.8261 -3.6494 0.0912 25 1 -0.4849 0.8400 -0.0004 26 1 -0.1416 -1.4086 -1.5776 27 1 -1.2727 -3.4769 -2.2187 28 1 -1.9202 -8.3004 -1.1380 29 1 -0.8648 -8.4336 -2.5651 30 1 -1.9281 -10.6552 -1.7591 31 1 -0.3280 -11.3363 -2.2061 32 1 -0.0146 -12.3259 -0.0309 33 1 -1.7965 -12.4833 -0.1965 34 1 -0.7780 -11.1219 1.9137 35 1 -2.2061 -10.4723 1.0547 36 1 1.5524 -5.7515 0.0838 37 1 2.6912 -3.6911 0.7364 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758677988.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:13 Heat of formation + Delta-G solvation = -142.912640 kcal Electronic energy + Delta-G solvation = -20366.967867 eV Core-core repulsion = 17072.745184 eV Total energy + Delta-G solvation = -3294.222682 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.35805 -40.32906 -39.21974 -37.21486 -35.77389 -33.24565 -32.32750 -31.77080 -31.33059 -28.17243 -26.66692 -24.11520 -23.00813 -22.61205 -22.14606 -21.51931 -19.42717 -18.66165 -18.22182 -17.76533 -17.17996 -16.90589 -16.80504 -15.82429 -15.62848 -15.23407 -14.90854 -14.60128 -14.45261 -14.05742 -13.90189 -13.64056 -13.46350 -13.10991 -12.87675 -12.69989 -12.66092 -12.52275 -12.40689 -12.17500 -11.81435 -11.76435 -11.61769 -11.41018 -11.23933 -11.16844 -10.56766 -9.65307 -9.54066 -8.85684 -6.56182 0.22657 1.12733 1.36449 1.41311 1.54896 1.84806 1.88320 2.14625 2.67225 2.85411 3.49413 3.61218 3.64576 3.89866 4.03710 4.13922 4.21190 4.32752 4.35739 4.38951 4.45002 4.57412 4.79553 4.86371 4.91405 4.92767 4.97429 5.00663 5.14683 5.19688 5.22782 5.41837 5.54031 5.76942 5.91531 5.97043 6.06277 6.13750 6.47993 6.69004 6.81037 7.01323 8.09252 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.044934 B = 0.003171 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.984243 B = 8829.154439 C = 9159.130351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.033 3.967 3 Si 0.994 3.006 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.251 1.251 7 C -0.457 4.457 8 H 0.097 0.903 9 C 0.105 3.895 10 C -0.201 4.201 11 C -0.041 4.041 12 C -0.293 4.293 13 C 0.517 3.483 14 O -0.574 6.574 15 O -0.356 6.356 16 C 0.051 3.949 17 C 0.082 3.918 18 H 0.094 0.906 19 C -0.142 4.142 20 C -0.143 4.143 21 C 0.032 3.968 22 O -0.403 6.403 23 C -0.022 4.022 24 C -0.249 4.249 25 H 0.299 0.701 26 H 0.113 0.887 27 H 0.100 0.900 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.124 0.876 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.345 -15.353 -0.337 15.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.187 4.187 3 Si 0.813 3.187 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.174 1.174 7 C -0.483 4.483 8 H 0.115 0.885 9 C 0.102 3.898 10 C -0.221 4.221 11 C -0.060 4.060 12 C -0.296 4.296 13 C 0.370 3.630 14 O -0.470 6.470 15 O -0.273 6.273 16 C -0.024 4.024 17 C 0.024 3.976 18 H 0.112 0.888 19 C -0.179 4.179 20 C -0.181 4.181 21 C -0.044 4.044 22 O -0.323 6.323 23 C -0.040 4.040 24 C -0.269 4.269 25 H 0.111 0.889 26 H 0.131 0.869 27 H 0.118 0.882 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.129 0.871 32 H 0.109 0.891 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.142 0.858 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.073 -15.095 -0.370 15.099 hybrid contribution -0.362 0.707 -0.205 0.820 sum -0.436 -14.388 -0.575 14.406 Atomic orbital electron populations 1.69786 1.09639 1.32022 1.30217 1.27119 0.95528 1.05404 0.90677 0.85008 0.79189 0.74619 0.79876 1.18410 1.18995 1.17386 1.20282 0.99065 0.91868 1.37093 0.88500 1.18203 0.90673 0.93563 0.87410 1.20944 1.00990 0.96619 1.03500 1.20524 0.97188 0.91671 0.96588 1.18461 1.05357 0.89282 1.16486 1.21402 0.81243 0.84099 0.76280 1.90659 1.29046 1.88209 1.39115 1.86598 1.56373 1.15135 1.69203 1.23714 0.95840 0.82688 1.00116 1.22940 1.00842 0.92586 0.81239 0.88818 1.23146 1.02314 0.92629 0.99849 1.23265 1.04816 0.97663 0.92323 1.23691 0.95832 0.85320 0.99512 1.88547 1.74305 1.47874 1.21567 1.20749 0.92356 0.98077 0.92817 1.20944 1.05366 0.92312 1.08238 0.88944 0.86937 0.88176 0.92234 0.89656 0.89635 0.87108 0.89091 0.87417 0.88485 0.92287 0.85799 0.86436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.86 10.95 21.88 0.24 -38.62 16 2 C 0.03 1.52 5.14 85.36 0.44 1.96 16 3 Si 0.99 34.41 29.60 68.60 2.03 36.44 16 4 H -0.26 -8.79 7.11 99.48 0.71 -8.09 16 5 H -0.27 -8.76 7.11 99.48 0.71 -8.05 16 6 H -0.25 -8.32 7.11 99.48 0.71 -7.61 16 7 C -0.46 -22.74 9.04 23.46 0.21 -22.53 16 8 H 0.10 4.49 7.91 -2.91 -0.02 4.47 16 9 C 0.10 5.51 5.58 -21.27 -0.12 5.39 16 10 C -0.20 -10.73 8.63 22.47 0.19 -10.54 16 11 C -0.04 -2.12 9.52 22.26 0.21 -1.90 16 12 C -0.29 -14.61 5.89 -19.94 -0.12 -14.72 16 13 C 0.52 24.31 7.89 70.27 0.55 24.86 16 14 O -0.57 -28.59 16.11 19.82 0.32 -28.27 16 15 O -0.36 -14.51 9.44 -54.89 -0.52 -15.03 16 16 C 0.05 1.58 5.01 71.98 0.36 1.94 16 17 C 0.08 1.98 3.82 31.06 0.12 2.10 16 18 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 19 C -0.14 -2.10 6.54 31.86 0.21 -1.89 16 20 C -0.14 -1.75 7.16 32.05 0.23 -1.52 16 21 C 0.03 0.60 7.78 72.65 0.56 1.17 16 22 O -0.40 -11.48 11.01 -147.56 -1.62 -13.11 16 23 C -0.02 -1.01 9.55 22.26 0.21 -0.80 16 24 C -0.25 -12.06 9.73 22.47 0.22 -11.84 16 25 H 0.30 13.01 8.29 -92.71 -0.77 12.24 16 26 H 0.11 6.09 6.16 -2.91 -0.02 6.07 16 27 H 0.10 5.06 7.63 -2.91 -0.02 5.03 16 28 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.09 1.21 7.85 -2.39 -0.02 1.19 16 31 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.12 5.20 7.59 -2.91 -0.02 5.17 16 37 H 0.12 5.13 8.06 -2.91 -0.02 5.11 16 Total: -1.00 -64.24 318.30 4.80 -59.44 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 1.07 Total: 27.49 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: 3.29 Total: -28.34 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.24 Total: -38.62 kcal Atomic # 8 Polarization: -54.58 SS G_CDS: -1.82 Total: -56.41 kcal Atomic # 14 Polarization: 34.41 SS G_CDS: 2.03 Total: 36.44 kcal Total: -64.24 4.80 -59.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758677988.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.475 kcal (2) G-P(sol) polarization free energy of solvation -64.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds