Wall clock time and date at job start Mon Mar 30 2020 02:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50693 * 109.47474 * 2 1 4 4 O 1.20764 * 119.99957 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00284 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.47165 * 44.99827 * 5 3 2 7 7 C 1.53003 * 109.46870 * 284.99670 * 5 3 2 8 8 O 1.45204 * 109.46962 * 164.99849 * 5 3 2 9 9 C 1.34782 * 116.99604 * 209.99545 * 8 5 3 10 10 O 1.21501 * 119.99853 * 359.72648 * 9 8 5 11 11 C 1.47508 * 119.99825 * 180.02562 * 9 8 5 12 12 C 1.40068 * 119.89710 * 359.72177 * 11 9 8 13 13 C 1.36309 * 120.09780 * 179.75784 * 12 11 9 14 14 C 1.40894 * 119.89319 * 0.54230 * 13 12 11 15 15 C 1.41101 * 120.09545 * 179.68773 * 14 13 12 16 16 H 1.08002 * 119.99988 * 204.65879 * 15 14 13 17 17 C 1.40243 * 119.99542 * 24.66789 * 15 14 13 18 18 N 1.30634 * 120.00492 * 17.87372 * 17 15 14 19 19 Si 1.86803 * 119.99425 * 197.87268 * 17 15 14 20 20 H 1.48496 * 109.47462 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46979 * 120.00216 * 19 17 15 22 22 H 1.48501 * 109.46923 * 239.99548 * 19 17 15 23 23 C 1.40900 * 119.80853 * 359.71793 * 14 13 12 24 24 C 1.36296 * 119.89629 * 359.97438 * 23 14 13 25 25 H 1.08995 * 109.47395 * 59.99762 * 1 2 3 26 26 H 1.08993 * 109.47014 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46480 * 299.99888 * 1 2 3 28 28 H 1.09003 * 109.46480 * 240.00112 * 2 1 3 29 29 H 1.09002 * 109.47495 * 120.00663 * 2 1 3 30 30 H 1.09000 * 109.46960 * 179.97438 * 7 5 3 31 31 H 1.08997 * 109.46956 * 300.00308 * 7 5 3 32 32 H 1.09003 * 109.46698 * 60.00026 * 7 5 3 33 33 H 1.07999 * 119.95456 * 0.02731 * 12 11 9 34 34 H 1.08000 * 120.05282 * 180.25528 * 13 12 11 35 35 H 0.96995 * 119.99894 * 180.02562 * 18 17 15 36 36 H 1.08000 * 120.05435 * 179.97438 * 23 14 13 37 37 H 1.07999 * 119.95500 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2477 2.3387 0.0005 5 6 3.5141 1.6961 -0.0006 6 1 4.0038 1.0481 -0.7275 7 6 4.0842 1.4220 1.3926 8 8 3.7481 3.0846 -0.3548 9 6 4.9002 3.3670 -0.9948 10 8 5.6896 2.4779 -1.2452 11 6 5.2057 4.7562 -1.3852 12 6 4.2943 5.7795 -1.0950 13 6 4.5746 7.0654 -1.4496 14 6 5.7782 7.3628 -2.1191 15 6 6.0697 8.6915 -2.4939 16 1 6.7422 8.8854 -3.3164 17 6 5.4863 9.7603 -1.7981 18 7 4.9676 9.5644 -0.6153 19 14 5.4510 11.4642 -2.5630 20 1 6.0983 11.4208 -3.8987 21 1 4.0426 11.9116 -2.7102 22 1 6.1833 12.4148 -1.6880 23 6 6.6895 6.3294 -2.4137 24 6 6.4038 5.0474 -2.0499 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 5.1559 1.6208 1.3920 31 1 3.5945 2.0700 2.1194 32 1 3.9084 0.3797 1.6584 33 1 3.3700 5.5499 -0.5858 34 1 3.8732 7.8544 -1.2218 35 1 4.5638 10.3036 -0.1344 36 1 7.6131 6.5528 -2.9271 37 1 7.1018 4.2546 -2.2749 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758679051.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:31 Heat of formation + Delta-G solvation = -122.335890 kcal Electronic energy + Delta-G solvation = -20501.149868 eV Core-core repulsion = 17207.819461 eV Total energy + Delta-G solvation = -3293.330407 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.21866 -39.04470 -37.43242 -35.67036 -33.95951 -33.23715 -31.69817 -30.19048 -29.50703 -26.27440 -25.81422 -23.63907 -22.02140 -20.95621 -19.91713 -19.44427 -17.56693 -17.16647 -16.75087 -15.79677 -15.73329 -15.42719 -15.08613 -14.58077 -14.01272 -13.62459 -13.43759 -13.08211 -12.89985 -12.61465 -12.49480 -12.36067 -12.11757 -12.07252 -11.93580 -11.43339 -11.41968 -11.32165 -11.27356 -10.99114 -10.72580 -10.41694 -10.14346 -9.65826 -9.59382 -9.38163 -9.32979 -7.75534 -7.64704 -7.10114 -4.68239 1.87322 2.03493 2.84905 2.92866 2.98432 3.03464 3.05531 3.60124 3.70501 4.05343 4.45823 4.70602 4.81593 4.98023 4.99767 5.08686 5.38063 5.43890 5.51575 5.58355 5.69159 5.71622 5.95675 5.98809 6.08220 6.21715 6.26558 6.73825 6.80635 6.97549 6.99083 7.09262 7.41651 7.45580 7.66389 7.78041 7.84112 8.00090 8.35486 8.56024 8.68742 8.70035 9.81056 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.028746 B = 0.003665 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.827396 B = 7637.459040 C = 8244.167180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.168 4.168 3 C 0.353 3.647 4 O -0.425 6.425 5 C 0.036 3.964 6 H 0.107 0.893 7 C -0.160 4.160 8 O -0.338 6.338 9 C 0.514 3.486 10 O -0.553 6.553 11 C -0.276 4.276 12 C -0.041 4.041 13 C -0.185 4.185 14 C 0.132 3.868 15 C -0.433 4.433 16 H 0.088 0.912 17 C 0.072 3.928 18 N -0.762 5.762 19 Si 0.915 3.085 20 H -0.256 1.256 21 H -0.268 1.268 22 H -0.271 1.271 23 C -0.240 4.240 24 C -0.017 4.017 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.122 0.878 35 H 0.289 0.711 36 H 0.101 0.899 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.023 -11.238 2.512 12.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.206 4.206 3 C 0.226 3.774 4 O -0.295 6.295 5 C -0.021 4.021 6 H 0.125 0.875 7 C -0.217 4.217 8 O -0.256 6.256 9 C 0.367 3.633 10 O -0.447 6.447 11 C -0.278 4.278 12 C -0.060 4.060 13 C -0.204 4.204 14 C 0.128 3.872 15 C -0.460 4.460 16 H 0.106 0.894 17 C -0.150 4.150 18 N -0.384 5.384 19 Si 0.739 3.261 20 H -0.180 1.180 21 H -0.192 1.192 22 H -0.196 1.196 23 C -0.259 4.259 24 C -0.036 4.036 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.121 0.879 34 H 0.140 0.860 35 H 0.100 0.900 36 H 0.120 0.880 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.364 -10.873 2.669 12.414 hybrid contribution 0.170 0.541 -0.145 0.586 sum -5.194 -10.331 2.524 11.836 Atomic orbital electron populations 1.21600 0.93430 1.01837 1.03325 1.22019 0.98480 0.95159 1.04930 1.24657 0.89672 0.91405 0.71697 1.90427 1.58336 1.47614 1.33168 1.22952 0.95418 0.84422 0.99294 0.87542 1.22065 1.02868 1.02296 0.94515 1.86787 1.41359 1.26886 1.70526 1.21691 0.77794 0.90501 0.73349 1.90672 1.48753 1.48991 1.56323 1.18188 1.01565 0.88015 1.20067 1.20692 0.96677 0.92836 0.95803 1.21016 0.98338 0.94953 1.06089 1.17862 0.89655 0.92708 0.86962 1.19968 1.22343 0.90345 1.13362 0.89405 1.26171 0.92558 1.02460 0.93845 1.69748 1.24446 1.34921 1.09322 0.86128 0.79354 0.80046 0.80608 1.17962 1.19243 1.19558 1.20679 1.00598 0.92812 1.11818 1.20336 0.93678 0.95998 0.93553 0.91962 0.91910 0.92007 0.88166 0.88169 0.90547 0.91261 0.90629 0.87890 0.86030 0.89997 0.88037 0.87947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.20 37.16 0.34 -0.93 16 2 C -0.17 -1.47 6.34 -27.88 -0.18 -1.64 16 3 C 0.35 4.82 6.45 -29.04 -0.19 4.63 16 4 O -0.43 -7.46 16.19 -13.23 -0.21 -7.67 16 5 C 0.04 0.54 2.91 -27.88 -0.08 0.46 16 6 H 0.11 1.54 7.16 -51.93 -0.37 1.16 16 7 C -0.16 -1.98 9.52 37.16 0.35 -1.63 16 8 O -0.34 -6.85 8.69 -47.28 -0.41 -7.26 16 9 C 0.51 11.50 7.86 34.51 0.27 11.77 16 10 O -0.55 -12.61 15.58 -19.26 -0.30 -12.91 16 11 C -0.28 -6.63 5.89 -104.75 -0.62 -7.25 16 12 C -0.04 -1.00 9.55 -39.59 -0.38 -1.38 16 13 C -0.18 -4.70 8.63 -39.27 -0.34 -5.04 16 14 C 0.13 3.37 5.58 -106.80 -0.60 2.77 16 15 C -0.43 -10.69 9.04 -37.74 -0.34 -11.03 16 16 H 0.09 2.05 7.91 -52.49 -0.42 1.63 16 17 C 0.07 1.67 5.14 -17.31 -0.09 1.59 16 18 N -0.76 -18.31 10.95 55.56 0.61 -17.70 16 19 Si 0.92 17.10 29.60 -169.99 -5.03 12.07 16 20 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 21 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 22 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 23 C -0.24 -5.77 9.73 -39.27 -0.38 -6.15 16 24 C -0.02 -0.40 9.52 -39.60 -0.38 -0.78 16 25 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 28 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.10 0.63 7.89 -51.93 -0.41 0.22 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.64 7.89 -51.93 -0.41 0.23 16 33 H 0.10 2.38 7.59 -52.49 -0.40 1.98 16 34 H 0.12 3.13 6.15 -52.49 -0.32 2.81 16 35 H 0.29 6.20 8.29 -40.82 -0.34 5.86 16 36 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 37 H 0.10 2.27 7.63 -52.49 -0.40 1.87 16 LS Contribution 325.07 15.07 4.90 4.90 Total: -1.00 -29.47 325.07 -7.86 -37.34 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -4.82 Total: 5.85 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -2.60 Total: -14.61 kcal Atomic # 7 Polarization: -18.31 SS G_CDS: 0.61 Total: -17.70 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.93 Total: -27.84 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.47 -7.86 -37.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758679051.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.997 kcal (2) G-P(sol) polarization free energy of solvation -29.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds