Wall clock time and date at job start Mon Mar 30 2020 02:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50693 * 109.47474 * 2 1 4 4 O 1.20764 * 119.99957 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00284 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.47165 * 44.99827 * 5 3 2 7 7 C 1.53003 * 109.46870 * 284.99670 * 5 3 2 8 8 O 1.45204 * 109.46962 * 164.99849 * 5 3 2 9 9 C 1.34782 * 116.99604 * 209.99545 * 8 5 3 10 10 O 1.21501 * 119.99853 * 359.72648 * 9 8 5 11 11 C 1.47508 * 119.99825 * 180.02562 * 9 8 5 12 12 C 1.40068 * 119.89710 * 359.72177 * 11 9 8 13 13 C 1.36309 * 120.09780 * 179.75784 * 12 11 9 14 14 C 1.40894 * 119.89319 * 0.54230 * 13 12 11 15 15 C 1.41101 * 120.09545 * 179.68773 * 14 13 12 16 16 H 1.08002 * 119.99988 * 204.65879 * 15 14 13 17 17 C 1.40243 * 119.99542 * 24.66789 * 15 14 13 18 18 N 1.30634 * 120.00492 * 17.87372 * 17 15 14 19 19 Si 1.86803 * 119.99425 * 197.87268 * 17 15 14 20 20 H 1.48496 * 109.47462 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46979 * 120.00216 * 19 17 15 22 22 H 1.48501 * 109.46923 * 239.99548 * 19 17 15 23 23 C 1.40900 * 119.80853 * 359.71793 * 14 13 12 24 24 C 1.36296 * 119.89629 * 359.97438 * 23 14 13 25 25 H 1.08995 * 109.47395 * 59.99762 * 1 2 3 26 26 H 1.08993 * 109.47014 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46480 * 299.99888 * 1 2 3 28 28 H 1.09003 * 109.46480 * 240.00112 * 2 1 3 29 29 H 1.09002 * 109.47495 * 120.00663 * 2 1 3 30 30 H 1.09000 * 109.46960 * 179.97438 * 7 5 3 31 31 H 1.08997 * 109.46956 * 300.00308 * 7 5 3 32 32 H 1.09003 * 109.46698 * 60.00026 * 7 5 3 33 33 H 1.07999 * 119.95456 * 0.02731 * 12 11 9 34 34 H 1.08000 * 120.05282 * 180.25528 * 13 12 11 35 35 H 0.96995 * 119.99894 * 180.02562 * 18 17 15 36 36 H 1.08000 * 120.05435 * 179.97438 * 23 14 13 37 37 H 1.07999 * 119.95500 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2477 2.3387 0.0005 5 6 3.5141 1.6961 -0.0006 6 1 4.0038 1.0481 -0.7275 7 6 4.0842 1.4220 1.3926 8 8 3.7481 3.0846 -0.3548 9 6 4.9002 3.3670 -0.9948 10 8 5.6896 2.4779 -1.2452 11 6 5.2057 4.7562 -1.3852 12 6 4.2943 5.7795 -1.0950 13 6 4.5746 7.0654 -1.4496 14 6 5.7782 7.3628 -2.1191 15 6 6.0697 8.6915 -2.4939 16 1 6.7422 8.8854 -3.3164 17 6 5.4863 9.7603 -1.7981 18 7 4.9676 9.5644 -0.6153 19 14 5.4510 11.4642 -2.5630 20 1 6.0983 11.4208 -3.8987 21 1 4.0426 11.9116 -2.7102 22 1 6.1833 12.4148 -1.6880 23 6 6.6895 6.3294 -2.4137 24 6 6.4038 5.0474 -2.0499 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 5.1559 1.6208 1.3920 31 1 3.5945 2.0700 2.1194 32 1 3.9084 0.3797 1.6584 33 1 3.3700 5.5499 -0.5858 34 1 3.8732 7.8544 -1.2218 35 1 4.5638 10.3036 -0.1344 36 1 7.6131 6.5528 -2.9271 37 1 7.1018 4.2546 -2.2749 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758679051.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:30 Heat of formation + Delta-G solvation = -136.437644 kcal Electronic energy + Delta-G solvation = -20501.761366 eV Core-core repulsion = 17207.819461 eV Total energy + Delta-G solvation = -3293.941905 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.65839 -40.44809 -39.24277 -37.29140 -35.77733 -34.17410 -32.85945 -31.94571 -31.40837 -28.06025 -26.80460 -24.96190 -23.50201 -22.84686 -21.59827 -20.53979 -19.43076 -18.77074 -18.17809 -17.29679 -17.04892 -16.85535 -16.32573 -15.91288 -15.77473 -15.22861 -14.76648 -14.65571 -14.27662 -14.01016 -13.81288 -13.74525 -13.46590 -13.25924 -13.19315 -12.89170 -12.86865 -12.69012 -12.46249 -12.42020 -12.03218 -11.85562 -11.82623 -11.45657 -11.33037 -11.16315 -10.56802 -9.66892 -9.56375 -8.87239 -6.57759 0.20092 0.80981 1.10553 1.34151 1.40090 1.55943 1.69234 1.84942 2.13742 2.65060 2.91716 3.59440 3.79757 3.88173 3.94807 4.09191 4.25143 4.29733 4.33889 4.38925 4.61449 4.66191 4.76800 4.89802 4.96038 4.97584 5.00759 5.07985 5.09217 5.19307 5.30606 5.37243 5.52976 5.78047 5.87702 5.93758 6.11651 6.40828 6.46544 6.67372 6.79146 6.97342 8.07700 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.028746 B = 0.003665 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.827396 B = 7637.459040 C = 8244.167180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.158 4.158 3 C 0.359 3.641 4 O -0.475 6.475 5 C 0.018 3.982 6 H 0.117 0.883 7 C -0.156 4.156 8 O -0.355 6.355 9 C 0.519 3.481 10 O -0.560 6.560 11 C -0.295 4.295 12 C -0.042 4.042 13 C -0.203 4.203 14 C 0.105 3.895 15 C -0.456 4.456 16 H 0.096 0.904 17 C 0.033 3.967 18 N -0.791 5.791 19 Si 0.993 3.007 20 H -0.252 1.252 21 H -0.263 1.263 22 H -0.261 1.261 23 C -0.249 4.249 24 C -0.019 4.019 25 H 0.042 0.958 26 H 0.092 0.908 27 H 0.049 0.951 28 H 0.126 0.874 29 H 0.137 0.863 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.124 0.876 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.300 0.700 36 H 0.118 0.882 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.041 -12.308 2.555 13.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.195 4.195 3 C 0.234 3.766 4 O -0.349 6.349 5 C -0.037 4.037 6 H 0.135 0.865 7 C -0.213 4.213 8 O -0.272 6.272 9 C 0.372 3.628 10 O -0.456 6.456 11 C -0.297 4.297 12 C -0.061 4.061 13 C -0.222 4.222 14 C 0.102 3.898 15 C -0.482 4.482 16 H 0.114 0.886 17 C -0.187 4.187 18 N -0.414 5.414 19 Si 0.812 3.188 20 H -0.175 1.175 21 H -0.187 1.187 22 H -0.186 1.186 23 C -0.268 4.268 24 C -0.038 4.038 25 H 0.061 0.939 26 H 0.111 0.889 27 H 0.068 0.932 28 H 0.144 0.856 29 H 0.155 0.845 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.142 0.858 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.111 0.889 36 H 0.136 0.864 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.381 -11.982 2.728 13.415 hybrid contribution 0.147 0.775 -0.092 0.795 sum -5.234 -11.207 2.636 12.646 Atomic orbital electron populations 1.21637 0.93594 1.03259 1.01873 1.22122 0.98200 0.91442 1.07747 1.25311 0.88331 0.93319 0.69616 1.90426 1.59019 1.49550 1.35902 1.23603 0.97342 0.81708 1.01095 0.86549 1.22098 1.01431 1.05208 0.92534 1.86740 1.40058 1.30542 1.69899 1.21334 0.78336 0.89757 0.73369 1.90644 1.49173 1.49032 1.56728 1.18464 1.01758 0.89183 1.20317 1.20741 0.96955 0.92756 0.95683 1.20993 0.98661 0.95092 1.07483 1.18198 0.90083 0.93880 0.87667 1.20301 1.23276 0.90714 1.13924 0.88600 1.27100 0.91433 1.06308 0.93844 1.69778 1.24370 1.36785 1.10475 0.84981 0.79533 0.74558 0.79713 1.17462 1.18699 1.18590 1.20888 1.01044 0.92790 1.12077 1.20513 0.93827 0.96263 0.93193 0.93871 0.88916 0.93183 0.85642 0.84508 0.92130 0.91881 0.85807 0.87612 0.87077 0.88903 0.86427 0.86565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.20 71.98 0.66 -1.59 16 2 C -0.16 -2.22 6.34 29.85 0.19 -2.03 16 3 C 0.36 9.33 6.45 29.10 0.19 9.51 16 4 O -0.48 -16.87 16.19 16.92 0.27 -16.60 16 5 C 0.02 0.53 2.91 29.85 0.09 0.61 16 6 H 0.12 3.16 7.16 -2.39 -0.02 3.14 16 7 C -0.16 -3.57 9.52 71.98 0.69 -2.88 16 8 O -0.35 -14.55 8.69 -50.65 -0.44 -14.99 16 9 C 0.52 23.45 7.86 70.27 0.55 24.01 16 10 O -0.56 -25.35 15.58 19.83 0.31 -25.04 16 11 C -0.29 -14.47 5.89 -19.95 -0.12 -14.59 16 12 C -0.04 -2.14 9.55 22.26 0.21 -1.93 16 13 C -0.20 -10.72 8.63 22.47 0.19 -10.53 16 14 C 0.11 5.51 5.58 -21.27 -0.12 5.40 16 15 C -0.46 -22.71 9.04 23.46 0.21 -22.49 16 16 H 0.10 4.47 7.91 -2.91 -0.02 4.45 16 17 C 0.03 1.54 5.14 85.36 0.44 1.98 16 18 N -0.79 -38.44 10.95 21.87 0.24 -38.20 16 19 Si 0.99 34.36 29.60 68.60 2.03 36.40 16 20 H -0.25 -8.45 7.11 99.48 0.71 -7.74 16 21 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 22 H -0.26 -8.63 7.11 99.48 0.71 -7.93 16 23 C -0.25 -12.14 9.73 22.47 0.22 -11.92 16 24 C -0.02 -0.93 9.52 22.26 0.21 -0.72 16 25 H 0.04 0.82 8.10 -2.39 -0.02 0.80 16 26 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 28 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.14 1.00 7.89 -2.39 -0.02 0.98 16 30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.12 1.60 7.89 -2.39 -0.02 1.58 16 33 H 0.11 5.12 7.59 -2.91 -0.02 5.10 16 34 H 0.11 5.98 6.15 -2.91 -0.02 5.96 16 35 H 0.30 12.88 8.29 -92.71 -0.77 12.11 16 36 H 0.12 5.19 8.06 -2.91 -0.02 5.17 16 37 H 0.12 5.13 7.63 -2.91 -0.02 5.11 16 Total: -1.00 -66.06 325.07 7.10 -58.96 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 1.07 Total: 26.63 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: 3.62 Total: -27.16 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.24 Total: -38.20 kcal Atomic # 8 Polarization: -56.77 SS G_CDS: 0.14 Total: -56.62 kcal Atomic # 14 Polarization: 34.36 SS G_CDS: 2.03 Total: 36.40 kcal Total: -66.06 7.10 -58.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758679051.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.480 kcal (2) G-P(sol) polarization free energy of solvation -66.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds