Wall clock time and date at job start Mon Mar 30 2020 02:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50704 * 109.46809 * 2 1 4 4 O 1.20758 * 120.00217 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99987 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.46951 * 319.99936 * 5 3 2 7 7 C 1.52995 * 109.47160 * 79.99973 * 5 3 2 8 8 O 1.45199 * 109.47304 * 200.00001 * 5 3 2 9 9 C 1.34775 * 117.00086 * 149.99620 * 8 5 3 10 10 O 1.21505 * 120.00052 * 0.02562 * 9 8 5 11 11 C 1.47506 * 119.99881 * 180.02562 * 9 8 5 12 12 C 1.40074 * 119.90068 * 180.02562 * 11 9 8 13 13 C 1.36300 * 120.10268 * 179.69843 * 12 11 9 14 14 C 1.40901 * 119.89681 * 0.28287 * 13 12 11 15 15 C 1.41088 * 120.09762 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99824 * 204.64650 * 15 14 13 17 17 C 1.40244 * 119.99910 * 24.63847 * 15 14 13 18 18 N 1.30633 * 120.00105 * 17.88774 * 17 15 14 19 19 Si 1.86802 * 119.99995 * 197.87719 * 17 15 14 20 20 H 1.48505 * 109.47060 * 60.00153 * 19 17 15 21 21 H 1.48496 * 109.47375 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47084 * 300.00541 * 19 17 15 23 23 C 1.40898 * 119.80165 * 359.97438 * 14 13 12 24 24 C 1.36301 * 119.89990 * 0.02562 * 23 14 13 25 25 H 1.09002 * 109.47485 * 60.00374 * 1 2 3 26 26 H 1.09009 * 109.47020 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47710 * 299.99946 * 1 2 3 28 28 H 1.08994 * 109.47458 * 240.00398 * 2 1 3 29 29 H 1.09002 * 109.47485 * 119.99626 * 2 1 3 30 30 H 1.08998 * 109.47519 * 180.02562 * 7 5 3 31 31 H 1.09000 * 109.47099 * 300.00139 * 7 5 3 32 32 H 1.09004 * 109.47219 * 60.00127 * 7 5 3 33 33 H 1.08004 * 119.94254 * 359.97438 * 12 11 9 34 34 H 1.07992 * 120.05043 * 180.29427 * 13 12 11 35 35 H 0.97005 * 120.00049 * 179.97438 * 18 17 15 36 36 H 1.08002 * 120.04811 * 180.02562 * 23 14 13 37 37 H 1.08001 * 119.95017 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2474 2.3387 0.0005 5 6 3.5138 1.6963 0.0006 6 1 4.0147 0.9888 0.6615 7 6 4.0616 1.5431 -1.4197 8 8 3.7544 3.0496 0.4687 9 6 4.9166 3.2769 1.1122 10 8 5.7074 2.3693 1.2771 11 6 5.2285 4.6276 1.6162 12 6 6.4373 4.8617 2.2842 13 6 6.7324 6.1096 2.7463 14 6 5.8169 7.1636 2.5563 15 6 6.1183 8.4571 3.0324 16 1 5.3204 9.1495 3.2565 17 6 7.4541 8.8435 3.2147 18 7 8.4131 8.1729 2.6343 19 14 7.8619 10.3175 4.2875 20 1 7.3662 10.0781 5.6667 21 1 9.3332 10.5161 4.3173 22 1 7.2103 11.5302 3.7308 23 6 4.5999 6.9222 1.8886 24 6 4.3131 5.6712 1.4299 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5137 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.1333 1.7418 -1.4193 31 1 3.8810 0.5272 -1.7711 32 1 3.5608 2.2506 -2.0806 33 1 7.1384 4.0531 2.4294 34 1 7.6667 6.2902 3.2570 35 1 9.3370 8.4404 2.7601 36 1 3.8954 7.7273 1.7404 37 1 3.3806 5.4853 0.9176 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758679052.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:33 Heat of formation + Delta-G solvation = -122.475721 kcal Electronic energy + Delta-G solvation = -20449.865270 eV Core-core repulsion = 17156.528799 eV Total energy + Delta-G solvation = -3293.336471 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.23151 -39.05836 -37.43711 -35.66807 -33.98044 -33.22578 -31.70129 -30.17816 -29.54331 -26.28061 -25.85572 -23.60040 -22.02018 -21.03301 -19.83353 -19.47784 -17.60208 -17.20513 -16.72980 -15.81355 -15.75741 -15.35748 -15.11845 -14.60091 -14.01305 -13.61709 -13.45903 -13.13699 -12.86967 -12.63547 -12.48513 -12.32495 -12.22255 -12.06361 -11.93072 -11.47198 -11.40919 -11.32980 -11.24140 -11.02224 -10.69707 -10.44046 -10.15609 -9.69156 -9.55477 -9.40005 -9.34683 -7.75763 -7.64947 -7.10425 -4.68673 1.84188 2.03788 2.87097 2.91820 2.94971 3.03289 3.05282 3.60061 3.69997 4.03922 4.45631 4.69390 4.80726 4.97228 4.99740 5.07550 5.37194 5.42976 5.51271 5.57223 5.68131 5.70865 5.94436 5.97355 6.06909 6.22307 6.26187 6.73530 6.80632 6.93980 7.04774 7.08572 7.40804 7.43211 7.61234 7.78097 7.85807 8.00390 8.34938 8.55574 8.67128 8.70813 9.80799 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.041512 B = 0.003378 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.342822 B = 8286.431481 C = 8681.465522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.169 4.169 3 C 0.355 3.645 4 O -0.426 6.426 5 C 0.036 3.964 6 H 0.106 0.894 7 C -0.160 4.160 8 O -0.340 6.340 9 C 0.513 3.487 10 O -0.551 6.551 11 C -0.276 4.276 12 C -0.032 4.032 13 C -0.185 4.185 14 C 0.132 3.868 15 C -0.434 4.434 16 H 0.087 0.913 17 C 0.073 3.927 18 N -0.763 5.763 19 Si 0.917 3.083 20 H -0.259 1.259 21 H -0.275 1.275 22 H -0.261 1.261 23 C -0.240 4.240 24 C -0.026 4.026 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.123 0.877 35 H 0.290 0.710 36 H 0.100 0.900 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.749 -10.340 -3.778 12.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.206 4.206 3 C 0.227 3.773 4 O -0.297 6.297 5 C -0.021 4.021 6 H 0.124 0.876 7 C -0.217 4.217 8 O -0.258 6.258 9 C 0.366 3.634 10 O -0.445 6.445 11 C -0.278 4.278 12 C -0.051 4.051 13 C -0.204 4.204 14 C 0.129 3.871 15 C -0.461 4.461 16 H 0.105 0.895 17 C -0.150 4.150 18 N -0.386 5.386 19 Si 0.740 3.260 20 H -0.183 1.183 21 H -0.199 1.199 22 H -0.185 1.185 23 C -0.259 4.259 24 C -0.045 4.045 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.120 0.880 34 H 0.141 0.859 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.707 -10.108 -3.797 12.712 hybrid contribution 0.514 0.402 0.332 0.732 sum -6.194 -9.706 -3.465 12.024 Atomic orbital electron populations 1.21600 0.93428 1.01857 1.03299 1.22023 0.98482 0.95167 1.04962 1.24658 0.89661 0.91392 0.71573 1.90414 1.58374 1.47652 1.33232 1.22953 0.95381 0.85654 0.98076 0.87596 1.22060 1.03013 1.02651 0.94025 1.86773 1.40673 1.29595 1.68726 1.21705 0.77853 0.90052 0.73824 1.90679 1.48998 1.46236 1.58542 1.18195 1.00715 0.89343 1.19558 1.20450 0.93507 0.96701 0.94433 1.20975 1.01936 0.91148 1.06344 1.17848 0.90458 0.92972 0.85866 1.19909 0.92567 0.98486 1.35123 0.89455 1.26170 0.96066 0.98695 0.94074 1.69734 1.01979 1.36373 1.30466 0.86211 0.78160 0.80658 0.81000 1.18341 1.19933 1.18549 1.20728 1.00584 0.96094 1.08486 1.20593 0.96291 0.92515 0.95089 0.92022 0.91900 0.91961 0.88164 0.88122 0.90507 0.90659 0.91269 0.88024 0.85895 0.89890 0.88170 0.87807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.20 37.15 0.34 -0.90 16 2 C -0.17 -1.45 6.36 -27.89 -0.18 -1.63 16 3 C 0.35 4.75 6.42 -29.03 -0.19 4.56 16 4 O -0.43 -7.28 16.24 -12.83 -0.21 -7.49 16 5 C 0.04 0.54 2.91 -27.88 -0.08 0.46 16 6 H 0.11 1.52 7.16 -51.93 -0.37 1.15 16 7 C -0.16 -1.98 9.53 37.15 0.35 -1.63 16 8 O -0.34 -6.78 8.72 -47.15 -0.41 -7.19 16 9 C 0.51 11.46 7.86 34.51 0.27 11.73 16 10 O -0.55 -12.69 15.58 -19.27 -0.30 -12.99 16 11 C -0.28 -6.62 5.89 -104.75 -0.62 -7.23 16 12 C -0.03 -0.79 9.52 -39.59 -0.38 -1.16 16 13 C -0.18 -4.70 8.63 -39.27 -0.34 -5.04 16 14 C 0.13 3.38 5.58 -106.80 -0.60 2.78 16 15 C -0.43 -10.70 9.04 -37.75 -0.34 -11.04 16 16 H 0.09 2.03 7.91 -52.49 -0.42 1.61 16 17 C 0.07 1.68 5.14 -17.31 -0.09 1.59 16 18 N -0.76 -18.32 10.95 55.56 0.61 -17.71 16 19 Si 0.92 17.08 29.60 -169.99 -5.03 12.05 16 20 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 21 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 22 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 23 C -0.24 -5.76 9.73 -39.27 -0.38 -6.14 16 24 C -0.03 -0.61 9.55 -39.59 -0.38 -0.99 16 25 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 26 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 27 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 28 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.10 2.39 7.63 -52.48 -0.40 1.99 16 34 H 0.12 3.15 6.15 -52.49 -0.32 2.83 16 35 H 0.29 6.25 8.29 -40.82 -0.34 5.91 16 36 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 37 H 0.10 2.25 7.59 -52.49 -0.40 1.85 16 LS Contribution 325.63 15.07 4.91 4.91 Total: -1.00 -29.35 325.63 -7.87 -37.22 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -4.84 Total: 5.84 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -2.60 Total: -14.65 kcal Atomic # 7 Polarization: -18.32 SS G_CDS: 0.61 Total: -17.71 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.92 Total: -27.66 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.03 Total: 12.05 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.35 -7.87 -37.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758679052.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.252 kcal (2) G-P(sol) polarization free energy of solvation -29.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds