Wall clock time and date at job start Mon Mar 30 2020 02:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50704 * 109.46809 * 2 1 4 4 O 1.20758 * 120.00217 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99987 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.46951 * 319.99936 * 5 3 2 7 7 C 1.52995 * 109.47160 * 79.99973 * 5 3 2 8 8 O 1.45199 * 109.47304 * 200.00001 * 5 3 2 9 9 C 1.34775 * 117.00086 * 149.99620 * 8 5 3 10 10 O 1.21505 * 120.00052 * 0.02562 * 9 8 5 11 11 C 1.47506 * 119.99881 * 180.02562 * 9 8 5 12 12 C 1.40074 * 119.90068 * 180.02562 * 11 9 8 13 13 C 1.36300 * 120.10268 * 179.69843 * 12 11 9 14 14 C 1.40901 * 119.89681 * 0.28287 * 13 12 11 15 15 C 1.41088 * 120.09762 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99824 * 204.64650 * 15 14 13 17 17 C 1.40244 * 119.99910 * 24.63847 * 15 14 13 18 18 N 1.30633 * 120.00105 * 17.88774 * 17 15 14 19 19 Si 1.86802 * 119.99995 * 197.87719 * 17 15 14 20 20 H 1.48505 * 109.47060 * 60.00153 * 19 17 15 21 21 H 1.48496 * 109.47375 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47084 * 300.00541 * 19 17 15 23 23 C 1.40898 * 119.80165 * 359.97438 * 14 13 12 24 24 C 1.36301 * 119.89990 * 0.02562 * 23 14 13 25 25 H 1.09002 * 109.47485 * 60.00374 * 1 2 3 26 26 H 1.09009 * 109.47020 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47710 * 299.99946 * 1 2 3 28 28 H 1.08994 * 109.47458 * 240.00398 * 2 1 3 29 29 H 1.09002 * 109.47485 * 119.99626 * 2 1 3 30 30 H 1.08998 * 109.47519 * 180.02562 * 7 5 3 31 31 H 1.09000 * 109.47099 * 300.00139 * 7 5 3 32 32 H 1.09004 * 109.47219 * 60.00127 * 7 5 3 33 33 H 1.08004 * 119.94254 * 359.97438 * 12 11 9 34 34 H 1.07992 * 120.05043 * 180.29427 * 13 12 11 35 35 H 0.97005 * 120.00049 * 179.97438 * 18 17 15 36 36 H 1.08002 * 120.04811 * 180.02562 * 23 14 13 37 37 H 1.08001 * 119.95017 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2474 2.3387 0.0005 5 6 3.5138 1.6963 0.0006 6 1 4.0147 0.9888 0.6615 7 6 4.0616 1.5431 -1.4197 8 8 3.7544 3.0496 0.4687 9 6 4.9166 3.2769 1.1122 10 8 5.7074 2.3693 1.2771 11 6 5.2285 4.6276 1.6162 12 6 6.4373 4.8617 2.2842 13 6 6.7324 6.1096 2.7463 14 6 5.8169 7.1636 2.5563 15 6 6.1183 8.4571 3.0324 16 1 5.3204 9.1495 3.2565 17 6 7.4541 8.8435 3.2147 18 7 8.4131 8.1729 2.6343 19 14 7.8619 10.3175 4.2875 20 1 7.3662 10.0781 5.6667 21 1 9.3332 10.5161 4.3173 22 1 7.2103 11.5302 3.7308 23 6 4.5999 6.9222 1.8886 24 6 4.3131 5.6712 1.4299 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5137 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.1333 1.7418 -1.4193 31 1 3.8810 0.5272 -1.7711 32 1 3.5608 2.2506 -2.0806 33 1 7.1384 4.0531 2.4294 34 1 7.6667 6.2902 3.2570 35 1 9.3370 8.4404 2.7601 36 1 3.8954 7.7273 1.7404 37 1 3.3806 5.4853 0.9176 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758679052.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:32 Heat of formation + Delta-G solvation = -136.403355 kcal Electronic energy + Delta-G solvation = -20450.469218 eV Core-core repulsion = 17156.528799 eV Total energy + Delta-G solvation = -3293.940419 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.65901 -40.44769 -39.24477 -37.28699 -35.79602 -34.13517 -32.83545 -31.98610 -31.41747 -28.05935 -26.83445 -24.91214 -23.55199 -22.84712 -21.53562 -20.55626 -19.44575 -18.83756 -18.11735 -17.27966 -17.06541 -16.83012 -16.33096 -15.94264 -15.74952 -15.23790 -14.76181 -14.64796 -14.24355 -14.08256 -13.80489 -13.74377 -13.47847 -13.24231 -13.20120 -12.87391 -12.86030 -12.68374 -12.46947 -12.40421 -12.03406 -11.88419 -11.83712 -11.44942 -11.32837 -11.17055 -10.56513 -9.67352 -9.56269 -8.87264 -6.58077 0.20275 0.79401 1.10471 1.35842 1.40928 1.52470 1.69564 1.85578 2.13680 2.65146 2.91780 3.59262 3.79763 3.89327 3.94608 4.09264 4.25565 4.29120 4.33352 4.39306 4.61965 4.65584 4.76811 4.89883 4.95114 4.98075 5.01251 5.07667 5.12347 5.17718 5.31107 5.37055 5.51971 5.74204 5.88986 5.94678 6.12019 6.40273 6.45888 6.67101 6.78769 6.97348 8.07471 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.041512 B = 0.003378 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.342822 B = 8286.431481 C = 8681.465522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.160 4.160 3 C 0.361 3.639 4 O -0.473 6.473 5 C 0.019 3.981 6 H 0.115 0.885 7 C -0.156 4.156 8 O -0.352 6.352 9 C 0.519 3.481 10 O -0.562 6.562 11 C -0.294 4.294 12 C -0.038 4.038 13 C -0.201 4.201 14 C 0.106 3.894 15 C -0.457 4.457 16 H 0.096 0.904 17 C 0.034 3.966 18 N -0.792 5.792 19 Si 0.993 3.007 20 H -0.257 1.257 21 H -0.264 1.264 22 H -0.254 1.254 23 C -0.251 4.251 24 C -0.024 4.024 25 H 0.051 0.949 26 H 0.091 0.909 27 H 0.042 0.958 28 H 0.137 0.863 29 H 0.123 0.877 30 H 0.059 0.941 31 H 0.122 0.878 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.300 0.700 36 H 0.115 0.885 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.143 -11.191 -3.975 13.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.196 4.196 3 C 0.236 3.764 4 O -0.346 6.346 5 C -0.037 4.037 6 H 0.133 0.867 7 C -0.213 4.213 8 O -0.270 6.270 9 C 0.372 3.628 10 O -0.458 6.458 11 C -0.297 4.297 12 C -0.057 4.057 13 C -0.220 4.220 14 C 0.102 3.898 15 C -0.484 4.484 16 H 0.114 0.886 17 C -0.186 4.186 18 N -0.414 5.414 19 Si 0.812 3.188 20 H -0.181 1.181 21 H -0.189 1.189 22 H -0.177 1.177 23 C -0.270 4.270 24 C -0.043 4.043 25 H 0.070 0.930 26 H 0.110 0.890 27 H 0.062 0.938 28 H 0.155 0.845 29 H 0.141 0.859 30 H 0.078 0.922 31 H 0.140 0.860 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.132 0.868 35 H 0.112 0.888 36 H 0.133 0.867 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.112 -10.992 -4.016 13.694 hybrid contribution 0.615 0.571 0.325 0.900 sum -6.497 -10.421 -3.691 12.823 Atomic orbital electron populations 1.21636 0.93492 1.03252 1.01951 1.22123 0.98282 0.91572 1.07649 1.25252 0.88237 0.93257 0.69637 1.90413 1.58953 1.49462 1.35779 1.23595 0.97360 0.83136 0.99621 0.86741 1.22090 1.01543 1.05429 0.92263 1.86720 1.39116 1.32996 1.68166 1.21344 0.78432 0.89251 0.73790 1.90653 1.49593 1.46438 1.59085 1.18446 1.00695 0.90784 1.19762 1.20534 0.94028 0.96537 0.94568 1.20958 1.01987 0.91726 1.07369 1.18185 0.91191 0.93703 0.86706 1.20257 0.93935 0.98450 1.35709 0.88618 1.27096 0.95231 1.01605 0.94691 1.69767 1.02811 1.37844 1.31017 0.85071 0.78344 0.76696 0.78689 1.18072 1.18851 1.17749 1.20930 1.00629 0.96868 1.08584 1.20729 0.96628 0.92186 0.94721 0.93007 0.89022 0.93835 0.84544 0.85865 0.92229 0.85992 0.91734 0.87725 0.86768 0.88843 0.86743 0.86431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.20 71.98 0.66 -1.50 16 2 C -0.16 -2.19 6.36 29.85 0.19 -2.00 16 3 C 0.36 9.09 6.42 29.10 0.19 9.28 16 4 O -0.47 -16.06 16.24 16.56 0.27 -15.79 16 5 C 0.02 0.53 2.91 29.85 0.09 0.62 16 6 H 0.11 3.09 7.16 -2.39 -0.02 3.08 16 7 C -0.16 -3.57 9.53 71.98 0.69 -2.88 16 8 O -0.35 -14.07 8.72 -50.69 -0.44 -14.51 16 9 C 0.52 23.41 7.86 70.27 0.55 23.97 16 10 O -0.56 -25.98 15.58 19.82 0.31 -25.67 16 11 C -0.29 -14.43 5.89 -19.95 -0.12 -14.55 16 12 C -0.04 -1.91 9.52 22.26 0.21 -1.70 16 13 C -0.20 -10.58 8.63 22.47 0.19 -10.39 16 14 C 0.11 5.53 5.58 -21.28 -0.12 5.41 16 15 C -0.46 -22.77 9.04 23.46 0.21 -22.55 16 16 H 0.10 4.45 7.91 -2.91 -0.02 4.42 16 17 C 0.03 1.57 5.14 85.36 0.44 2.01 16 18 N -0.79 -38.28 10.95 21.87 0.24 -38.04 16 19 Si 0.99 34.19 29.60 68.60 2.03 36.22 16 20 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 21 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 22 H -0.25 -8.40 7.11 99.48 0.71 -7.69 16 23 C -0.25 -12.27 9.73 22.47 0.22 -12.06 16 24 C -0.02 -1.14 9.55 22.26 0.21 -0.93 16 25 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 26 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.04 0.80 8.10 -2.39 -0.02 0.78 16 28 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.10 5.09 7.63 -2.91 -0.02 5.06 16 34 H 0.11 6.08 6.15 -2.91 -0.02 6.06 16 35 H 0.30 12.89 8.29 -92.70 -0.77 12.12 16 36 H 0.11 5.11 8.06 -2.91 -0.02 5.09 16 37 H 0.12 5.15 7.59 -2.91 -0.02 5.13 16 Total: -1.00 -65.49 325.63 7.09 -58.39 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 1.07 Total: 26.68 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: 3.62 Total: -27.28 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.24 Total: -38.04 kcal Atomic # 8 Polarization: -56.11 SS G_CDS: 0.14 Total: -55.97 kcal Atomic # 14 Polarization: 34.19 SS G_CDS: 2.03 Total: 36.22 kcal Total: -65.49 7.09 -58.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758679052.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.011 kcal (2) G-P(sol) polarization free energy of solvation -65.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds