Wall clock time and date at job start Mon Mar 30 2020 01:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86803 * 119.99879 * 2 1 4 4 H 1.48507 * 109.47062 * 274.53133 * 3 2 1 5 5 H 1.48505 * 109.47145 * 34.52234 * 3 2 1 6 6 H 1.48494 * 109.47509 * 154.52779 * 3 2 1 7 7 C 1.40245 * 120.00405 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00137 * 198.03068 * 7 2 1 9 9 C 1.41085 * 120.00045 * 18.02485 * 7 2 1 10 10 C 1.40903 * 120.10112 * 205.06429 * 9 7 2 11 11 C 1.36299 * 119.89697 * 180.27795 * 10 9 7 12 12 C 1.40070 * 120.10088 * 359.49918 * 11 10 9 13 13 C 1.47510 * 119.89792 * 180.25514 * 12 11 10 14 14 O 1.21510 * 119.99737 * 180.24620 * 13 12 11 15 15 O 1.34773 * 120.00276 * 0.25162 * 13 12 11 16 16 C 1.45199 * 116.99936 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.46953 * 179.97438 * 16 15 13 18 18 H 1.09001 * 110.43186 * 305.69673 * 17 16 15 19 19 C 1.54807 * 110.48573 * 183.15519 * 17 16 15 20 20 C 1.55229 * 101.98572 * 220.51413 * 19 17 16 21 21 O 1.44382 * 103.56213 * 36.88219 * 20 19 17 22 22 C 1.43737 * 106.97758 * 320.00990 * 21 20 19 23 23 C 1.40061 * 120.19828 * 0.50306 * 12 11 10 24 24 C 1.36301 * 120.10656 * 359.75293 * 23 12 11 25 25 H 0.96996 * 120.00233 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.04744 * 0.02562 * 10 9 7 27 27 H 1.07997 * 119.94821 * 179.72636 * 11 10 9 28 28 H 1.09003 * 109.46938 * 299.99351 * 16 15 13 29 29 H 1.08997 * 109.47447 * 59.99861 * 16 15 13 30 30 H 1.08994 * 110.91048 * 338.63998 * 19 17 16 31 31 H 1.09007 * 110.90821 * 102.24508 * 19 17 16 32 32 H 1.08994 * 110.52378 * 278.38351 * 20 19 17 33 33 H 1.09000 * 110.77714 * 155.49804 * 20 19 17 34 34 H 1.09002 * 109.87645 * 267.09035 * 22 21 20 35 35 H 1.09003 * 110.00578 * 146.00528 * 22 21 20 36 36 H 1.08004 * 119.94893 * 179.73232 * 23 12 11 37 37 H 1.07997 * 120.05692 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.3920 2.1018 -1.3958 5 1 1.4888 2.6232 0.7935 6 1 3.5824 1.4146 0.6021 7 6 2.0076 -1.2145 0.0005 8 1 3.0479 -1.2373 0.2901 9 6 1.3542 -2.4066 -0.3770 10 6 1.8214 -3.6489 0.0961 11 6 1.1905 -4.7984 -0.2758 12 6 0.0729 -4.7452 -1.1185 13 6 -0.6099 -5.9916 -1.5137 14 8 -1.5768 -5.9480 -2.2483 15 8 -0.1614 -7.1788 -1.0599 16 6 -0.8825 -8.3637 -1.4892 17 6 -0.2316 -9.6062 -0.8781 18 1 0.8319 -9.6343 -1.1153 19 6 -0.9337 -10.8899 -1.3838 20 6 -0.9881 -11.7559 -0.0967 21 8 -1.2369 -10.7924 0.9494 22 6 -0.4447 -9.6315 0.6479 23 6 -0.3950 -3.5126 -1.5912 24 6 0.2328 -2.3584 -1.2288 25 1 -0.4850 0.8400 -0.0004 26 1 2.6806 -3.6904 0.7491 27 1 1.5506 -5.7513 0.0828 28 1 -1.9195 -8.2971 -1.1599 29 1 -0.8504 -8.4346 -2.5764 30 1 -1.9376 -10.6675 -1.7454 31 1 -0.3418 -11.3776 -2.1584 32 1 -0.0357 -12.2606 0.0649 33 1 -1.8006 -12.4804 -0.1522 34 1 0.5176 -9.6975 1.1555 35 1 -0.9693 -8.7297 0.9638 36 1 -1.2545 -3.4767 -2.2443 37 1 -0.1284 -1.4084 -1.5941 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758685747.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:19 Heat of formation + Delta-G solvation = -143.571824 kcal Electronic energy + Delta-G solvation = -20357.302181 eV Core-core repulsion = 17063.050914 eV Total energy + Delta-G solvation = -3294.251267 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.37927 -40.29115 -39.22618 -37.31892 -35.77139 -34.02531 -32.12288 -31.47363 -30.50738 -28.22843 -26.82539 -24.23334 -23.41537 -22.86331 -21.62870 -21.50794 -19.42372 -18.65640 -18.07777 -17.62365 -17.18258 -16.87118 -16.79453 -15.94018 -15.76928 -15.34781 -15.05043 -14.61762 -14.45179 -14.04784 -13.81754 -13.65446 -13.47307 -13.10895 -12.92305 -12.81078 -12.68178 -12.41785 -12.36568 -12.27026 -11.81160 -11.72641 -11.49933 -11.40358 -11.24077 -11.17217 -10.65049 -9.64577 -9.53403 -8.85954 -6.56000 0.23008 1.13322 1.35991 1.41029 1.54861 1.82267 1.88049 2.14245 2.67341 2.98243 3.44251 3.61830 3.64425 3.78992 4.10930 4.17225 4.26676 4.33437 4.36524 4.40079 4.47885 4.56007 4.77421 4.85532 4.86222 4.92798 4.97116 4.99179 5.11193 5.15670 5.19720 5.41227 5.54330 5.76813 5.89747 5.92295 5.97344 6.14231 6.48570 6.69410 6.81512 7.00809 8.09116 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.044414 B = 0.003151 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.280358 B = 8885.114752 C = 9213.548881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.033 3.967 3 Si 0.992 3.008 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.250 1.250 7 C -0.458 4.458 8 H 0.097 0.903 9 C 0.105 3.895 10 C -0.249 4.249 11 C -0.020 4.020 12 C -0.292 4.292 13 C 0.519 3.481 14 O -0.574 6.574 15 O -0.357 6.357 16 C 0.072 3.928 17 C -0.115 4.115 18 H 0.109 0.891 19 C -0.141 4.141 20 C 0.042 3.958 21 O -0.405 6.405 22 C 0.050 3.950 23 C -0.042 4.042 24 C -0.202 4.202 25 H 0.299 0.701 26 H 0.118 0.882 27 H 0.130 0.870 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.305 -13.626 -0.726 13.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.187 4.187 3 Si 0.811 3.189 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.173 1.173 7 C -0.484 4.484 8 H 0.115 0.885 9 C 0.102 3.898 10 C -0.268 4.268 11 C -0.039 4.039 12 C -0.295 4.295 13 C 0.372 3.628 14 O -0.470 6.470 15 O -0.275 6.275 16 C -0.002 4.002 17 C -0.134 4.134 18 H 0.127 0.873 19 C -0.179 4.179 20 C -0.034 4.034 21 O -0.325 6.325 22 C -0.026 4.026 23 C -0.061 4.061 24 C -0.221 4.221 25 H 0.110 0.890 26 H 0.136 0.864 27 H 0.148 0.852 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.130 0.870 32 H 0.096 0.904 33 H 0.128 0.872 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.672 -13.546 -0.718 13.668 hybrid contribution -0.156 0.921 -0.311 0.985 sum 1.516 -12.625 -1.028 12.757 Atomic orbital electron populations 1.69779 1.09621 1.31987 1.30319 1.27092 0.95501 1.05368 0.90707 0.85025 0.79339 0.74824 0.79677 1.18539 1.19044 1.17335 1.20280 0.99119 0.91898 1.37119 0.88509 1.18205 0.90561 0.93666 0.87406 1.20964 1.05558 0.92310 1.08008 1.20772 0.92174 0.98204 0.92716 1.18446 1.05594 0.89170 1.16248 1.21345 0.81064 0.83976 0.76428 1.90683 1.29445 1.88149 1.38697 1.86530 1.56980 1.15110 1.68833 1.23180 0.95291 0.81850 0.99882 1.22615 1.02592 0.92812 0.95378 0.87306 1.23215 1.02049 0.93298 0.99331 1.23830 1.03039 0.91863 0.84654 1.88856 1.67659 1.27083 1.48874 1.23226 0.96151 0.88763 0.94483 1.20529 0.97138 0.91813 0.96600 1.20925 1.01201 0.96585 1.03409 0.88987 0.86368 0.85169 0.92255 0.90910 0.90266 0.87015 0.90394 0.87237 0.90797 0.91246 0.88339 0.87215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.40 10.99 21.87 0.24 -38.16 16 2 C 0.03 1.52 5.13 85.36 0.44 1.96 16 3 Si 0.99 33.96 29.60 68.60 2.03 35.99 16 4 H -0.26 -8.75 7.11 99.48 0.71 -8.05 16 5 H -0.27 -8.71 7.11 99.48 0.71 -8.00 16 6 H -0.25 -8.20 7.11 99.48 0.71 -7.49 16 7 C -0.46 -22.33 9.04 23.46 0.21 -22.12 16 8 H 0.10 4.39 7.91 -2.91 -0.02 4.37 16 9 C 0.11 5.36 5.57 -21.28 -0.12 5.24 16 10 C -0.25 -11.51 9.73 22.47 0.22 -11.29 16 11 C -0.02 -0.89 9.55 22.26 0.21 -0.67 16 12 C -0.29 -13.80 5.89 -19.95 -0.12 -13.92 16 13 C 0.52 22.92 7.89 70.27 0.55 23.47 16 14 O -0.57 -27.54 16.11 19.80 0.32 -27.22 16 15 O -0.36 -12.94 9.29 -56.84 -0.53 -13.47 16 16 C 0.07 2.04 4.54 71.98 0.33 2.37 16 17 C -0.12 -2.40 3.33 -9.80 -0.03 -2.43 16 18 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 19 C -0.14 -2.12 6.73 31.98 0.22 -1.90 16 20 C 0.04 0.64 7.72 72.75 0.56 1.20 16 21 O -0.40 -9.74 11.52 -148.98 -1.72 -11.46 16 22 C 0.05 1.18 7.26 72.35 0.53 1.71 16 23 C -0.04 -2.11 9.52 22.26 0.21 -1.89 16 24 C -0.20 -10.52 8.63 22.47 0.19 -10.33 16 25 H 0.30 12.86 8.29 -92.71 -0.77 12.09 16 26 H 0.12 4.90 8.06 -2.91 -0.02 4.88 16 27 H 0.13 4.86 7.59 -2.91 -0.02 4.84 16 28 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.08 1.25 7.87 -2.39 -0.02 1.23 16 31 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 1.90 7.65 -2.39 -0.02 1.88 16 36 H 0.10 4.86 7.63 -2.91 -0.02 4.84 16 37 H 0.11 5.85 6.19 -2.91 -0.02 5.84 16 Total: -1.00 -60.76 317.53 4.82 -55.95 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 1.07 Total: 26.97 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: 3.40 Total: -28.59 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.24 Total: -38.16 kcal Atomic # 8 Polarization: -50.22 SS G_CDS: -1.93 Total: -52.14 kcal Atomic # 14 Polarization: 33.96 SS G_CDS: 2.03 Total: 35.99 kcal Total: -60.76 4.82 -55.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758685747.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.626 kcal (2) G-P(sol) polarization free energy of solvation -60.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds