Wall clock time and date at job start Mon Mar 30 2020 01:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30629 * 1 3 3 Si 1.86797 * 119.99710 * 2 1 4 4 H 1.48508 * 109.47019 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47385 * 299.99955 * 3 2 1 6 6 H 1.48501 * 109.47425 * 60.00232 * 3 2 1 7 7 C 1.40249 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99671 * 162.40984 * 7 2 1 9 9 C 1.41088 * 119.99478 * 342.68796 * 7 2 1 10 10 C 1.40894 * 120.10290 * 334.87908 * 9 7 2 11 11 C 1.36303 * 119.89949 * 179.76338 * 10 9 7 12 12 C 1.40070 * 120.09588 * 0.51696 * 11 10 9 13 13 C 1.47507 * 119.89626 * 179.75602 * 12 11 10 14 14 O 1.21506 * 119.99978 * 179.97438 * 13 12 11 15 15 O 1.34780 * 120.00456 * 359.97438 * 13 12 11 16 16 C 1.45198 * 117.00471 * 179.97438 * 15 13 12 17 17 C 1.52996 * 109.47235 * 180.02562 * 16 15 13 18 18 H 1.08998 * 110.46204 * 54.29302 * 17 16 15 19 19 C 1.54505 * 110.51034 * 176.90531 * 17 16 15 20 20 C 1.54477 * 104.06467 * 118.64219 * 19 17 16 21 21 O 1.44424 * 104.80333 * 23.97968 * 20 19 17 22 22 C 1.44642 * 105.36606 * 319.56327 * 21 20 19 23 23 C 1.40068 * 120.20277 * 359.73922 * 12 11 10 24 24 C 1.36297 * 120.09816 * 359.97438 * 23 12 11 25 25 H 0.97001 * 120.00618 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.04979 * 0.02562 * 10 9 7 27 27 H 1.07999 * 119.95376 * 180.23457 * 11 10 9 28 28 H 1.08998 * 109.46683 * 299.99977 * 16 15 13 29 29 H 1.08999 * 109.47084 * 59.99037 * 16 15 13 30 30 H 1.09005 * 110.50918 * 237.28302 * 19 17 16 31 31 H 1.08998 * 110.51674 * 359.85316 * 19 17 16 32 32 H 1.09003 * 110.36895 * 142.81061 * 20 19 17 33 33 H 1.09001 * 110.37219 * 265.14443 * 20 19 17 34 34 H 1.09005 * 110.34530 * 281.59506 * 22 21 20 35 35 H 1.09003 * 110.50629 * 159.18884 * 22 21 20 36 36 H 1.07998 * 119.94643 * 180.02562 * 23 12 11 37 37 H 1.07998 * 120.04896 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 3.7003 1.3464 0.0006 5 1 1.8815 2.3965 -1.2125 6 1 1.8815 2.3965 1.2125 7 6 2.0076 -1.2146 -0.0005 8 1 3.0497 -1.2362 -0.2832 9 6 1.3501 -2.4089 0.3625 10 6 0.2200 -2.3660 1.2029 11 6 -0.4150 -3.5219 1.5471 12 6 0.0609 -4.7520 1.0755 13 6 -0.6265 -6.0007 1.4552 14 8 -0.2155 -7.0687 1.0468 15 8 -1.7103 -5.9570 2.2551 16 6 -2.3362 -7.2244 2.5871 17 6 -3.5415 -6.9755 3.4960 18 1 -4.2240 -6.2605 3.0365 19 6 -4.2722 -8.3020 3.8016 20 6 -4.1654 -8.4445 5.3361 21 8 -3.9841 -7.0959 5.8202 22 6 -3.0799 -6.4698 4.8808 23 6 1.1872 -4.7999 0.2442 24 6 1.8249 -3.6485 -0.1098 25 1 -0.4851 0.8400 -0.0004 26 1 -0.1451 -1.4184 1.5703 27 1 -1.2836 -3.4898 2.1881 28 1 -2.6668 -7.7169 1.6726 29 1 -1.6170 -7.8608 3.1027 30 1 -5.3166 -8.2421 3.4954 31 1 -3.7763 -9.1349 3.3032 32 1 -5.0816 -8.8734 5.7420 33 1 -3.3068 -9.0615 5.6011 34 1 -2.0541 -6.7825 5.0762 35 1 -3.1635 -5.3844 4.9356 36 1 1.5503 -5.7506 -0.1174 37 1 2.6930 -3.6864 -0.7511 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758685966.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:22 Heat of formation + Delta-G solvation = -129.249034 kcal Electronic energy + Delta-G solvation = -20406.414948 eV Core-core repulsion = 17112.784764 eV Total energy + Delta-G solvation = -3293.630184 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.93456 -39.14657 -37.46472 -35.73127 -33.97657 -33.01089 -30.41633 -29.58079 -29.53113 -26.62326 -25.43109 -23.06158 -22.21345 -20.99290 -20.55211 -19.93126 -17.59396 -17.06287 -16.63972 -16.35513 -15.89117 -15.61291 -15.20591 -15.07253 -14.10592 -13.92086 -13.45364 -13.18537 -12.98687 -12.76001 -12.35175 -12.14774 -11.98490 -11.83368 -11.53390 -11.48114 -11.33505 -11.09891 -11.00166 -10.78379 -10.71081 -10.15418 -10.14126 -9.91871 -9.64691 -9.48047 -9.40379 -7.78569 -7.66904 -7.12269 -4.70662 2.02175 2.83468 2.91163 2.96700 3.00060 3.26697 3.60148 3.68802 3.84362 4.42050 4.45201 4.57731 4.75027 4.91314 5.09503 5.20521 5.43918 5.46949 5.48886 5.52251 5.62932 5.70857 5.79788 5.91200 6.10110 6.18409 6.23208 6.62656 6.71636 6.76812 6.95655 7.00020 7.08375 7.38491 7.64057 7.75377 7.80724 7.97757 8.32583 8.53669 8.66437 8.70669 9.78923 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.028979 B = 0.003460 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.975371 B = 8090.813180 C = 8806.358189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.073 3.927 3 Si 0.916 3.084 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.268 1.268 7 C -0.434 4.434 8 H 0.088 0.912 9 C 0.131 3.869 10 C -0.185 4.185 11 C -0.042 4.042 12 C -0.276 4.276 13 C 0.515 3.485 14 O -0.554 6.554 15 O -0.360 6.360 16 C 0.077 3.923 17 C -0.122 4.122 18 H 0.096 0.904 19 C -0.148 4.148 20 C 0.044 3.956 21 O -0.379 6.379 22 C 0.052 3.948 23 C -0.018 4.018 24 C -0.239 4.239 25 H 0.289 0.711 26 H 0.122 0.878 27 H 0.101 0.899 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.253 -7.110 6.066 11.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.150 4.150 3 Si 0.739 3.261 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.192 1.192 7 C -0.461 4.461 8 H 0.106 0.894 9 C 0.128 3.872 10 C -0.204 4.204 11 C -0.061 4.061 12 C -0.278 4.278 13 C 0.368 3.632 14 O -0.448 6.448 15 O -0.278 6.278 16 C 0.002 3.998 17 C -0.140 4.140 18 H 0.114 0.886 19 C -0.186 4.186 20 C -0.032 4.032 21 O -0.297 6.297 22 C -0.024 4.024 23 C -0.036 4.036 24 C -0.259 4.259 25 H 0.100 0.900 26 H 0.140 0.860 27 H 0.120 0.880 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.471 -7.171 6.141 11.446 hybrid contribution 0.331 0.447 -0.377 0.672 sum -6.141 -6.724 5.764 10.777 Atomic orbital electron populations 1.69740 1.08002 1.30288 1.30574 1.26163 0.94858 1.02111 0.91858 0.86125 0.81081 0.79934 0.78984 1.17967 1.19560 1.19244 1.19965 0.98364 0.91083 1.36661 0.89427 1.17855 0.90330 0.92192 0.86825 1.21014 0.99928 0.97077 1.02343 1.20638 0.97088 0.91916 0.96476 1.18215 1.04222 0.89255 1.16138 1.21581 0.76997 0.90211 0.74453 1.90693 1.66296 1.32447 1.55376 1.86587 1.43013 1.34306 1.63870 1.22863 0.93428 0.84971 0.98512 1.22559 0.96687 0.98250 0.96545 0.88605 1.22931 1.01603 0.97153 0.96926 1.23403 1.01613 0.85394 0.92840 1.89151 1.66563 1.24581 1.49438 1.23553 0.93384 0.99342 0.86144 1.20347 0.92536 0.97373 0.93393 1.20690 1.04606 0.92487 1.08082 0.90014 0.86037 0.88042 0.91453 0.91636 0.90032 0.90077 0.89075 0.92245 0.91840 0.88223 0.87983 0.88059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.95 10.95 55.56 0.61 -17.34 16 2 C 0.07 1.65 5.14 -17.31 -0.09 1.56 16 3 Si 0.92 16.80 29.60 -169.99 -5.03 11.77 16 4 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 5 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 6 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 7 C -0.43 -10.53 9.04 -37.75 -0.34 -10.87 16 8 H 0.09 2.02 7.91 -52.49 -0.42 1.60 16 9 C 0.13 3.29 5.57 -106.80 -0.60 2.70 16 10 C -0.18 -4.53 8.63 -39.27 -0.34 -4.87 16 11 C -0.04 -0.97 9.55 -39.59 -0.38 -1.35 16 12 C -0.28 -6.43 5.89 -104.75 -0.62 -7.05 16 13 C 0.51 11.26 7.89 34.51 0.27 11.54 16 14 O -0.55 -12.86 16.11 -19.27 -0.31 -13.17 16 15 O -0.36 -6.72 9.33 -40.71 -0.38 -7.10 16 16 C 0.08 1.12 4.61 37.16 0.17 1.29 16 17 C -0.12 -1.44 3.40 -89.05 -0.30 -1.74 16 18 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 19 C -0.15 -1.36 6.74 -25.17 -0.17 -1.53 16 20 C 0.04 0.42 7.64 37.93 0.29 0.71 16 21 O -0.38 -4.81 11.65 -35.23 -0.41 -5.22 16 22 C 0.05 0.65 7.10 37.94 0.27 0.92 16 23 C -0.02 -0.42 9.52 -39.59 -0.38 -0.79 16 24 C -0.24 -5.67 9.73 -39.27 -0.38 -6.06 16 25 H 0.29 6.05 8.29 -40.82 -0.34 5.72 16 26 H 0.12 3.01 6.17 -52.49 -0.32 2.69 16 27 H 0.10 2.13 7.59 -52.49 -0.40 1.73 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.94 8.01 -51.93 -0.42 0.52 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.67 7.73 -51.93 -0.40 0.27 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.79 7.78 -51.93 -0.40 0.39 16 35 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.10 2.25 7.63 -52.49 -0.40 1.85 16 37 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 317.42 15.07 4.78 4.78 Total: -1.00 -27.65 317.42 -8.18 -35.83 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -4.85 Total: 6.00 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -2.59 Total: -15.54 kcal Atomic # 7 Polarization: -17.95 SS G_CDS: 0.61 Total: -17.34 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -1.10 Total: -25.50 kcal Atomic # 14 Polarization: 16.80 SS G_CDS: -5.03 Total: 11.77 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.65 -8.18 -35.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758685966.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.420 kcal (2) G-P(sol) polarization free energy of solvation -27.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds