Wall clock time and date at job start Mon Mar 30 2020 01:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30629 * 1 3 3 Si 1.86797 * 119.99710 * 2 1 4 4 H 1.48508 * 109.47019 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47385 * 299.99955 * 3 2 1 6 6 H 1.48501 * 109.47425 * 60.00232 * 3 2 1 7 7 C 1.40249 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99671 * 162.40984 * 7 2 1 9 9 C 1.41088 * 119.99478 * 342.68796 * 7 2 1 10 10 C 1.40894 * 120.10290 * 334.87908 * 9 7 2 11 11 C 1.36303 * 119.89949 * 179.76338 * 10 9 7 12 12 C 1.40070 * 120.09588 * 0.51696 * 11 10 9 13 13 C 1.47507 * 119.89626 * 179.75602 * 12 11 10 14 14 O 1.21506 * 119.99978 * 179.97438 * 13 12 11 15 15 O 1.34780 * 120.00456 * 359.97438 * 13 12 11 16 16 C 1.45198 * 117.00471 * 179.97438 * 15 13 12 17 17 C 1.52996 * 109.47235 * 180.02562 * 16 15 13 18 18 H 1.08998 * 110.46204 * 54.29302 * 17 16 15 19 19 C 1.54505 * 110.51034 * 176.90531 * 17 16 15 20 20 C 1.54477 * 104.06467 * 118.64219 * 19 17 16 21 21 O 1.44424 * 104.80333 * 23.97968 * 20 19 17 22 22 C 1.44642 * 105.36606 * 319.56327 * 21 20 19 23 23 C 1.40068 * 120.20277 * 359.73922 * 12 11 10 24 24 C 1.36297 * 120.09816 * 359.97438 * 23 12 11 25 25 H 0.97001 * 120.00618 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.04979 * 0.02562 * 10 9 7 27 27 H 1.07999 * 119.95376 * 180.23457 * 11 10 9 28 28 H 1.08998 * 109.46683 * 299.99977 * 16 15 13 29 29 H 1.08999 * 109.47084 * 59.99037 * 16 15 13 30 30 H 1.09005 * 110.50918 * 237.28302 * 19 17 16 31 31 H 1.08998 * 110.51674 * 359.85316 * 19 17 16 32 32 H 1.09003 * 110.36895 * 142.81061 * 20 19 17 33 33 H 1.09001 * 110.37219 * 265.14443 * 20 19 17 34 34 H 1.09005 * 110.34530 * 281.59506 * 22 21 20 35 35 H 1.09003 * 110.50629 * 159.18884 * 22 21 20 36 36 H 1.07998 * 119.94643 * 180.02562 * 23 12 11 37 37 H 1.07998 * 120.04896 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 3.7003 1.3464 0.0006 5 1 1.8815 2.3965 -1.2125 6 1 1.8815 2.3965 1.2125 7 6 2.0076 -1.2146 -0.0005 8 1 3.0497 -1.2362 -0.2832 9 6 1.3501 -2.4089 0.3625 10 6 0.2200 -2.3660 1.2029 11 6 -0.4150 -3.5219 1.5471 12 6 0.0609 -4.7520 1.0755 13 6 -0.6265 -6.0007 1.4552 14 8 -0.2155 -7.0687 1.0468 15 8 -1.7103 -5.9570 2.2551 16 6 -2.3362 -7.2244 2.5871 17 6 -3.5415 -6.9755 3.4960 18 1 -4.2240 -6.2605 3.0365 19 6 -4.2722 -8.3020 3.8016 20 6 -4.1654 -8.4445 5.3361 21 8 -3.9841 -7.0959 5.8202 22 6 -3.0799 -6.4698 4.8808 23 6 1.1872 -4.7999 0.2442 24 6 1.8249 -3.6485 -0.1098 25 1 -0.4851 0.8400 -0.0004 26 1 -0.1451 -1.4184 1.5703 27 1 -1.2836 -3.4898 2.1881 28 1 -2.6668 -7.7169 1.6726 29 1 -1.6170 -7.8608 3.1027 30 1 -5.3166 -8.2421 3.4954 31 1 -3.7763 -9.1349 3.3032 32 1 -5.0816 -8.8734 5.7420 33 1 -3.3068 -9.0615 5.6011 34 1 -2.0541 -6.7825 5.0762 35 1 -3.1635 -5.3844 4.9356 36 1 1.5503 -5.7506 -0.1174 37 1 2.6930 -3.6864 -0.7511 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758685966.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:22 Heat of formation + Delta-G solvation = -142.897635 kcal Electronic energy + Delta-G solvation = -20407.006796 eV Core-core repulsion = 17112.784764 eV Total energy + Delta-G solvation = -3294.222032 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.37103 -40.28744 -39.22289 -37.31592 -35.75004 -34.05481 -32.17760 -31.37907 -30.47087 -28.22663 -26.77746 -24.26401 -23.56111 -22.82494 -21.70115 -21.43170 -19.40723 -18.58962 -18.07461 -17.56127 -17.17879 -17.04617 -16.47171 -16.10542 -15.77671 -15.25709 -15.10405 -14.75727 -14.28515 -14.03543 -13.94086 -13.71670 -13.33098 -13.26756 -12.91956 -12.83049 -12.66700 -12.42460 -12.33081 -12.14076 -11.81353 -11.72977 -11.43158 -11.42608 -11.23101 -11.13585 -10.81482 -9.63477 -9.53226 -8.84941 -6.55591 0.23575 1.13251 1.35915 1.41639 1.56739 1.83812 1.88247 2.15378 2.67737 2.97036 3.50664 3.62456 3.66646 3.79372 4.06665 4.14171 4.24609 4.33965 4.35260 4.40013 4.46586 4.50422 4.75331 4.83012 4.86355 4.92389 4.97542 5.02448 5.09184 5.11749 5.22793 5.43012 5.55621 5.77392 5.81571 5.90952 5.96271 6.14945 6.49181 6.70183 6.81862 7.01358 8.09875 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.028979 B = 0.003460 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.975371 B = 8090.813180 C = 8806.358189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.036 3.964 3 Si 0.991 3.009 4 H -0.254 1.254 5 H -0.263 1.263 6 H -0.261 1.261 7 C -0.459 4.459 8 H 0.093 0.907 9 C 0.105 3.895 10 C -0.203 4.203 11 C -0.039 4.039 12 C -0.292 4.292 13 C 0.520 3.480 14 O -0.570 6.570 15 O -0.361 6.361 16 C 0.073 3.927 17 C -0.117 4.117 18 H 0.096 0.904 19 C -0.141 4.141 20 C 0.038 3.962 21 O -0.398 6.398 22 C 0.050 3.950 23 C -0.023 4.023 24 C -0.250 4.250 25 H 0.300 0.700 26 H 0.114 0.886 27 H 0.118 0.882 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.802 -7.097 6.385 11.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.177 1.177 5 H -0.187 1.187 6 H -0.185 1.185 7 C -0.485 4.485 8 H 0.111 0.889 9 C 0.102 3.898 10 C -0.222 4.222 11 C -0.057 4.057 12 C -0.295 4.295 13 C 0.373 3.627 14 O -0.466 6.466 15 O -0.278 6.278 16 C -0.001 4.001 17 C -0.136 4.136 18 H 0.114 0.886 19 C -0.179 4.179 20 C -0.038 4.038 21 O -0.317 6.317 22 C -0.026 4.026 23 C -0.042 4.042 24 C -0.270 4.270 25 H 0.111 0.889 26 H 0.132 0.868 27 H 0.136 0.864 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.131 0.869 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.113 0.887 36 H 0.129 0.871 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.045 -7.181 6.470 11.961 hybrid contribution 0.418 0.364 -0.446 0.712 sum -6.627 -6.817 6.024 11.255 Atomic orbital electron populations 1.69761 1.09437 1.31951 1.30220 1.27033 0.95554 1.05143 0.90740 0.85007 0.79520 0.75146 0.79278 1.17720 1.18739 1.18538 1.20272 0.98821 0.91916 1.37480 0.88937 1.18199 0.90982 0.93165 0.87492 1.21018 1.00670 0.97228 1.03264 1.20778 0.97259 0.91498 0.96208 1.18466 1.04575 0.90143 1.16277 1.21301 0.77523 0.89333 0.74543 1.90674 1.67011 1.32794 1.56150 1.86556 1.41802 1.36704 1.62730 1.23213 0.94189 0.83356 0.99365 1.22558 0.95574 1.00005 0.95435 0.88587 1.22948 1.02272 0.95807 0.96837 1.23647 1.03082 0.84083 0.92992 1.89133 1.66481 1.26248 1.49837 1.23523 0.93279 0.99239 0.86609 1.20510 0.92646 0.97635 0.93380 1.20871 1.05225 0.92368 1.08494 0.88903 0.86829 0.86392 0.90917 0.91300 0.88407 0.88838 0.86926 0.91528 0.92332 0.88719 0.87078 0.86846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.17 10.95 21.88 0.24 -36.93 16 2 C 0.04 1.60 5.14 85.36 0.44 2.04 16 3 Si 0.99 33.61 29.60 68.60 2.03 35.64 16 4 H -0.25 -8.44 7.11 99.48 0.71 -7.74 16 5 H -0.26 -8.55 7.11 99.48 0.71 -7.84 16 6 H -0.26 -8.52 7.11 99.48 0.71 -7.82 16 7 C -0.46 -22.41 9.04 23.46 0.21 -22.20 16 8 H 0.09 4.28 7.91 -2.91 -0.02 4.25 16 9 C 0.11 5.36 5.57 -21.28 -0.12 5.24 16 10 C -0.20 -10.14 8.63 22.47 0.19 -9.95 16 11 C -0.04 -1.80 9.55 22.26 0.21 -1.59 16 12 C -0.29 -13.68 5.89 -19.95 -0.12 -13.80 16 13 C 0.52 22.57 7.89 70.27 0.55 23.13 16 14 O -0.57 -26.19 16.11 19.82 0.32 -25.87 16 15 O -0.36 -13.22 9.33 -56.91 -0.53 -13.75 16 16 C 0.07 2.02 4.61 71.98 0.33 2.35 16 17 C -0.12 -2.58 3.40 -9.78 -0.03 -2.61 16 18 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 19 C -0.14 -2.22 6.74 31.61 0.21 -2.01 16 20 C 0.04 0.63 7.64 72.48 0.55 1.18 16 21 O -0.40 -9.54 11.65 -148.98 -1.74 -11.28 16 22 C 0.05 1.20 7.10 72.49 0.51 1.71 16 23 C -0.02 -1.09 9.52 22.26 0.21 -0.87 16 24 C -0.25 -12.03 9.73 22.47 0.22 -11.81 16 25 H 0.30 12.43 8.29 -92.71 -0.77 11.66 16 26 H 0.11 5.77 6.17 -2.91 -0.02 5.75 16 27 H 0.12 4.95 7.59 -2.91 -0.02 4.93 16 28 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.07 1.88 8.01 -2.39 -0.02 1.86 16 30 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.09 1.26 7.73 -2.39 -0.02 1.25 16 32 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.06 1.44 7.78 -2.38 -0.02 1.42 16 35 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.11 4.91 7.63 -2.91 -0.02 4.89 16 37 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 Total: -1.00 -58.66 317.42 4.78 -53.88 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 1.07 Total: 27.50 kcal Atomic # 6 Polarization: -32.57 SS G_CDS: 3.39 Total: -29.18 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.24 Total: -36.93 kcal Atomic # 8 Polarization: -48.95 SS G_CDS: -1.95 Total: -50.90 kcal Atomic # 14 Polarization: 33.61 SS G_CDS: 2.03 Total: 35.64 kcal Total: -58.66 4.78 -53.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758685966.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.020 kcal (2) G-P(sol) polarization free energy of solvation -58.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds