Wall clock time and date at job start Mon Mar 30 2020 01:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 112.99899 * 2 1 4 4 O 1.45199 * 109.47200 * 309.66640 * 3 2 1 5 5 C 1.34776 * 117.00102 * 180.02562 * 4 3 2 6 6 O 1.21509 * 119.99920 * 0.02562 * 5 4 3 7 7 C 1.47506 * 120.00251 * 180.02562 * 5 4 3 8 8 C 1.40075 * 119.89914 * 359.72889 * 7 5 4 9 9 C 1.36291 * 120.10144 * 179.71985 * 8 7 5 10 10 C 1.40902 * 119.89871 * 0.54980 * 9 8 7 11 11 C 1.41087 * 120.09897 * 179.70164 * 10 9 8 12 12 H 1.08002 * 119.99947 * 204.66447 * 11 10 9 13 13 C 1.40247 * 120.00168 * 24.66737 * 11 10 9 14 14 N 1.30630 * 119.99934 * 17.86553 * 13 11 10 15 15 Si 1.86807 * 119.99803 * 197.86681 * 13 11 10 16 16 H 1.48498 * 109.47159 * 59.99871 * 15 13 11 17 17 H 1.48497 * 109.46719 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47060 * 299.99959 * 15 13 11 19 19 C 1.40898 * 119.79938 * 359.72023 * 10 9 8 20 20 C 1.36299 * 119.90286 * 0.02562 * 19 10 9 21 21 C 1.54037 * 113.81894 * 228.01246 * 2 1 3 22 22 O 1.44174 * 85.51728 * 268.35161 * 21 2 1 23 23 C 1.44171 * 93.34184 * 335.80520 * 22 21 2 24 24 H 1.09006 * 109.47082 * 288.17377 * 1 2 3 25 25 H 1.08996 * 109.47454 * 48.17151 * 1 2 3 26 26 H 1.08997 * 109.47459 * 168.17774 * 1 2 3 27 27 H 1.08999 * 109.47145 * 69.66885 * 3 2 1 28 28 H 1.09003 * 109.47035 * 189.66683 * 3 2 1 29 29 H 1.08006 * 119.94719 * 359.97438 * 8 7 5 30 30 H 1.08001 * 120.05158 * 180.28050 * 9 8 7 31 31 H 0.97005 * 119.99771 * 180.02562 * 14 13 11 32 32 H 1.08004 * 120.05211 * 179.97438 * 19 10 9 33 33 H 1.07996 * 119.95471 * 179.97438 * 20 19 10 34 34 H 1.09004 * 113.86340 * 22.50230 * 21 2 1 35 35 H 1.08998 * 113.86353 * 154.20088 * 21 2 1 36 36 H 1.08996 * 113.86520 * 270.04698 * 23 22 21 37 37 H 1.09002 * 113.98327 * 138.35037 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1277 1.4084 0.0000 4 8 1.5125 2.1953 -1.0538 5 6 1.9312 3.4692 -1.1901 6 8 2.7872 3.9099 -0.4489 7 6 1.3502 4.3283 -2.2389 8 6 0.3675 3.8164 -3.0959 9 6 -0.1762 4.6082 -4.0628 10 6 0.2600 5.9403 -4.2071 11 6 -0.2955 6.7618 -5.2107 12 1 0.2664 7.6006 -5.5942 13 6 -1.5773 6.4893 -5.7102 14 7 -2.3915 5.7219 -5.0360 15 14 -2.1203 7.2237 -7.3398 16 1 -1.2095 6.7629 -8.4184 17 1 -3.5066 6.7858 -7.6425 18 1 -2.0762 8.7055 -7.2541 19 6 1.2527 6.4492 -3.3465 20 6 1.7872 5.6517 -2.3790 21 6 2.1520 -0.9427 -1.0474 22 8 2.1443 -1.9305 0.0027 23 6 2.1520 -0.9397 1.0501 24 1 -0.3633 0.3205 0.9765 25 1 -0.3634 0.6853 -0.7657 26 1 -0.3634 -1.0058 -0.2105 27 1 1.9410 1.8823 0.9636 28 1 3.2023 1.3470 -0.1726 29 1 0.0373 2.7938 -2.9876 30 1 -0.9370 4.2140 -4.7202 31 1 -3.2780 5.5331 -5.3817 32 1 1.5903 7.4695 -3.4538 33 1 2.5484 6.0407 -1.7192 34 1 1.4876 -1.1778 -1.8790 35 1 3.1511 -0.6476 -1.3681 36 1 3.1511 -0.6438 1.3699 37 1 1.4883 -1.1707 1.8833 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758696625.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:48 Heat of formation + Delta-G solvation = -92.763226 kcal Electronic energy + Delta-G solvation = -20618.653542 eV Core-core repulsion = 17326.605502 eV Total energy + Delta-G solvation = -3292.048041 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.86719 -39.43830 -37.47343 -35.70822 -33.98481 -32.58094 -30.36859 -29.54396 -27.38341 -26.74643 -26.26697 -25.04686 -22.29041 -20.99643 -19.95937 -19.03028 -17.60010 -16.99774 -16.68759 -16.32062 -15.83109 -15.59762 -15.45413 -15.09354 -14.06989 -13.68763 -13.50348 -13.18220 -13.06476 -12.70085 -12.41836 -12.18241 -12.08947 -12.03406 -11.55347 -11.46493 -11.32097 -11.04855 -10.83581 -10.77621 -10.58959 -10.17888 -10.11731 -9.81333 -9.64447 -9.46608 -9.39337 -7.79443 -7.67805 -7.13166 -4.71398 2.02304 2.85370 2.89905 2.92951 2.99453 3.22724 3.53793 3.59829 3.67930 4.09997 4.43418 4.64158 4.85409 4.96060 5.14192 5.32430 5.45239 5.47325 5.50583 5.70508 5.72124 5.81856 5.94193 5.99132 6.01727 6.15917 6.21922 6.27893 6.70728 6.75949 6.95059 6.99637 7.08211 7.37421 7.63560 7.74491 7.79681 7.96992 8.31440 8.52745 8.65736 8.70874 9.77997 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.028554 B = 0.003676 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.375874 B = 7614.893003 C = 8303.253493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.127 4.127 3 C 0.076 3.924 4 O -0.355 6.355 5 C 0.514 3.486 6 O -0.554 6.554 7 C -0.276 4.276 8 C -0.042 4.042 9 C -0.185 4.185 10 C 0.132 3.868 11 C -0.435 4.435 12 H 0.087 0.913 13 C 0.073 3.927 14 N -0.763 5.763 15 Si 0.916 3.084 16 H -0.259 1.259 17 H -0.274 1.274 18 H -0.261 1.261 19 C -0.240 4.240 20 C -0.018 4.018 21 C 0.046 3.954 22 O -0.380 6.380 23 C 0.047 3.953 24 H 0.061 0.939 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.101 0.899 30 H 0.122 0.878 31 H 0.290 0.710 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.941 -8.387 4.377 9.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.127 4.127 3 C 0.001 3.999 4 O -0.273 6.273 5 C 0.367 3.633 6 O -0.448 6.448 7 C -0.278 4.278 8 C -0.061 4.061 9 C -0.204 4.204 10 C 0.128 3.872 11 C -0.462 4.462 12 H 0.105 0.895 13 C -0.149 4.149 14 N -0.386 5.386 15 Si 0.739 3.261 16 H -0.183 1.183 17 H -0.199 1.199 18 H -0.186 1.186 19 C -0.259 4.259 20 C -0.037 4.037 21 C -0.031 4.031 22 O -0.299 6.299 23 C -0.030 4.030 24 H 0.080 0.920 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.119 0.881 30 H 0.140 0.860 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.918 -8.678 4.611 10.012 hybrid contribution -0.208 0.539 -0.458 0.738 sum 1.710 -8.138 4.152 9.295 Atomic orbital electron populations 1.21529 0.91054 1.02730 1.03154 1.23791 0.98816 0.93495 0.96640 1.22849 0.96806 0.89484 0.90751 1.86587 1.63074 1.25270 1.52342 1.21597 0.79348 0.79330 0.83066 1.90695 1.33375 1.74502 1.46270 1.18210 1.10338 0.94881 1.04405 1.20626 0.93630 0.97957 0.93887 1.21010 1.04061 0.93838 1.01503 1.17840 0.88724 0.91629 0.88982 1.19910 0.99328 1.11075 1.15853 0.89489 1.26156 0.96334 0.93879 0.98557 1.69730 1.06811 1.26533 1.35488 0.86217 0.78339 0.80396 0.81125 1.18345 1.19917 1.18559 1.20684 1.05818 0.98960 1.00423 1.20349 0.95881 0.91678 0.95746 1.24120 1.00691 0.85948 0.92321 1.89659 1.95735 1.27518 1.16951 1.24036 1.00525 0.86112 0.92335 0.92029 0.90325 0.91849 0.91397 0.91500 0.88084 0.86050 0.89904 0.88077 0.87992 0.88552 0.89931 0.89982 0.88724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 9.07 37.15 0.34 -1.15 16 2 C -0.13 -1.51 1.24 -153.43 -0.19 -1.70 16 3 C 0.08 1.10 4.94 37.16 0.18 1.28 16 4 O -0.35 -6.51 8.48 -40.70 -0.35 -6.86 16 5 C 0.51 11.12 7.89 34.51 0.27 11.39 16 6 O -0.55 -12.79 16.11 -19.27 -0.31 -13.10 16 7 C -0.28 -6.37 5.89 -104.75 -0.62 -6.99 16 8 C -0.04 -0.96 9.55 -39.59 -0.38 -1.34 16 9 C -0.19 -4.51 8.63 -39.27 -0.34 -4.85 16 10 C 0.13 3.28 5.58 -106.80 -0.60 2.69 16 11 C -0.43 -10.50 9.04 -37.75 -0.34 -10.84 16 12 H 0.09 1.98 7.91 -52.49 -0.42 1.57 16 13 C 0.07 1.66 5.14 -17.31 -0.09 1.57 16 14 N -0.76 -17.83 10.95 55.56 0.61 -17.22 16 15 Si 0.92 16.71 29.60 -169.99 -5.03 11.67 16 16 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 17 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 18 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 19 C -0.24 -5.65 9.73 -39.27 -0.38 -6.03 16 20 C -0.02 -0.41 9.52 -39.59 -0.38 -0.79 16 21 C 0.05 0.54 8.31 37.61 0.31 0.85 16 22 O -0.38 -4.78 12.39 -35.23 -0.44 -5.21 16 23 C 0.05 0.48 8.36 37.61 0.31 0.79 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.08 1.04 7.35 -51.93 -0.38 0.66 16 26 H 0.06 0.68 8.04 -51.93 -0.42 0.26 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 0.95 7.98 -51.93 -0.41 0.53 16 29 H 0.10 2.09 7.59 -52.48 -0.40 1.69 16 30 H 0.12 2.98 6.15 -52.49 -0.32 2.66 16 31 H 0.29 6.08 8.29 -40.82 -0.34 5.74 16 32 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 33 H 0.10 2.24 7.63 -52.49 -0.40 1.84 16 34 H 0.10 1.07 8.10 -51.93 -0.42 0.65 16 35 H 0.08 0.91 7.99 -51.93 -0.42 0.49 16 36 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 LS Contribution 319.31 15.07 4.81 4.81 Total: -1.00 -27.35 319.31 -7.42 -34.78 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -4.83 Total: 6.24 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -1.89 Total: -15.11 kcal Atomic # 7 Polarization: -17.83 SS G_CDS: 0.61 Total: -17.22 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -1.09 Total: -25.17 kcal Atomic # 14 Polarization: 16.71 SS G_CDS: -5.03 Total: 11.67 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.35 -7.42 -34.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758696625.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.988 kcal (2) G-P(sol) polarization free energy of solvation -27.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds