Wall clock time and date at job start Mon Mar 30 2020 02:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47239 * 2 1 4 4 C 1.50702 * 109.47318 * 120.00485 * 2 1 3 5 5 O 1.20757 * 119.99727 * 334.99314 * 4 2 1 6 6 C 1.50693 * 120.00068 * 154.99823 * 4 2 1 7 7 O 1.45203 * 109.47408 * 179.97438 * 6 4 2 8 8 C 1.34771 * 117.00457 * 180.02562 * 7 6 4 9 9 O 1.21515 * 120.00026 * 359.97438 * 8 7 6 10 10 C 1.47501 * 120.00094 * 179.97438 * 8 7 6 11 11 C 1.40073 * 119.90212 * 180.02562 * 10 8 7 12 12 C 1.36300 * 120.10206 * 180.25905 * 11 10 8 13 13 C 1.40893 * 119.89711 * 359.51403 * 12 11 10 14 14 C 1.41091 * 120.10255 * 180.23496 * 13 12 11 15 15 H 1.08001 * 120.00415 * 204.81651 * 14 13 12 16 16 C 1.40248 * 119.99756 * 24.80634 * 14 13 12 17 17 N 1.30632 * 119.99956 * 17.73115 * 16 14 13 18 18 Si 1.86797 * 120.00167 * 197.73172 * 16 14 13 19 19 H 1.48501 * 109.47351 * 90.00385 * 18 16 14 20 20 H 1.48499 * 109.47050 * 210.00026 * 18 16 14 21 21 H 1.48500 * 109.47161 * 329.99778 * 18 16 14 22 22 C 1.40906 * 119.80286 * 0.50317 * 13 12 11 23 23 C 1.36297 * 119.89800 * 359.73440 * 22 13 12 24 24 H 1.08999 * 109.46864 * 299.99851 * 1 2 3 25 25 H 1.09003 * 109.47179 * 59.99967 * 1 2 3 26 26 H 1.09003 * 109.47076 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46864 * 240.00149 * 2 1 3 28 28 H 1.08999 * 109.47071 * 60.00276 * 3 2 1 29 29 H 1.08997 * 109.47418 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47569 * 300.00217 * 3 2 1 31 31 H 1.09003 * 109.47412 * 60.00006 * 6 4 2 32 32 H 1.09003 * 109.47594 * 299.99582 * 6 4 2 33 33 H 1.08002 * 119.94534 * 359.97438 * 11 10 8 34 34 H 1.08004 * 120.05042 * 179.74750 * 12 11 10 35 35 H 0.97000 * 120.00424 * 179.97438 * 17 16 14 36 36 H 1.07999 * 120.05172 * 179.70589 * 22 13 12 37 37 H 1.07997 * 119.94971 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 1.3401 -0.7703 2.2180 6 6 3.3987 -1.3462 1.2283 7 8 3.6482 -1.9618 2.5195 8 6 4.8353 -2.5780 2.6845 9 8 5.6398 -2.6008 1.7741 10 6 5.1581 -3.2248 3.9703 11 6 6.3928 -3.8643 4.1397 12 6 6.6932 -4.4679 5.3242 13 6 5.7637 -4.4391 6.3827 14 6 6.0722 -5.0582 7.6124 15 1 5.2777 -5.3946 8.2620 16 6 7.4107 -5.2370 7.9911 17 7 8.3527 -4.5461 7.4066 18 14 7.8464 -6.4629 9.3314 19 1 8.1006 -7.7931 8.7221 20 1 9.0654 -6.0042 10.0447 21 1 6.7196 -6.5662 10.2932 22 6 4.5228 -3.7950 6.2076 23 6 4.2289 -3.1982 5.0180 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9562 0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 4.1540 -0.5837 1.0377 32 1 3.4447 -2.1062 0.4483 33 1 7.1060 -3.8830 3.3288 34 1 7.6438 -4.9642 5.4526 35 1 9.2785 -4.6694 7.6687 36 1 3.8054 -3.7746 7.0147 37 1 3.2782 -2.7040 4.8830 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758697109.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:14 Heat of formation + Delta-G solvation = -123.617461 kcal Electronic energy + Delta-G solvation = -20183.947111 eV Core-core repulsion = 16890.561131 eV Total energy + Delta-G solvation = -3293.385981 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.14693 -39.17315 -37.41916 -35.57053 -34.72693 -33.97344 -30.42416 -29.69333 -29.00822 -27.40047 -26.09052 -23.47185 -22.11280 -21.04153 -19.90804 -19.29834 -17.59792 -17.13352 -16.64355 -16.22188 -15.85161 -15.38805 -14.91023 -14.68430 -14.06161 -13.93193 -13.39666 -13.09550 -13.02687 -12.68981 -12.53521 -12.32106 -12.28408 -12.20876 -11.83338 -11.46118 -11.38970 -11.29446 -11.28558 -11.00011 -10.71163 -10.32121 -10.13814 -9.77982 -9.56451 -9.42072 -9.37772 -7.75712 -7.65067 -7.10405 -4.68723 1.83525 2.03026 2.86294 2.92688 2.95667 2.98922 3.03362 3.60307 3.70059 4.06068 4.45448 4.48799 4.67664 4.82632 5.19495 5.22057 5.27476 5.31940 5.44392 5.51264 5.52130 5.65826 5.85756 5.87704 5.95851 6.21837 6.26276 6.73676 6.80557 6.91991 7.04560 7.07353 7.40594 7.41497 7.61079 7.78220 7.85782 8.00420 8.35134 8.55682 8.66385 8.70149 9.80888 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.046150 B = 0.003119 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.570509 B = 8974.818798 C = 9365.622255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.137 4.137 3 C -0.143 4.143 4 C 0.357 3.643 5 O -0.425 6.425 6 C 0.015 3.985 7 O -0.345 6.345 8 C 0.513 3.487 9 O -0.552 6.552 10 C -0.276 4.276 11 C -0.032 4.032 12 C -0.185 4.185 13 C 0.132 3.868 14 C -0.434 4.434 15 H 0.088 0.912 16 C 0.072 3.928 17 N -0.763 5.763 18 Si 0.917 3.083 19 H -0.263 1.263 20 H -0.274 1.274 21 H -0.258 1.258 22 C -0.239 4.239 23 C -0.026 4.026 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.123 0.877 35 H 0.289 0.711 36 H 0.100 0.900 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.507 5.949 -9.851 13.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.156 4.156 3 C -0.200 4.200 4 C 0.229 3.771 5 O -0.295 6.295 6 C -0.060 4.060 7 O -0.262 6.262 8 C 0.366 3.634 9 O -0.446 6.446 10 C -0.278 4.278 11 C -0.051 4.051 12 C -0.204 4.204 13 C 0.128 3.872 14 C -0.460 4.460 15 H 0.106 0.894 16 C -0.150 4.150 17 N -0.385 5.385 18 Si 0.740 3.260 19 H -0.188 1.188 20 H -0.199 1.199 21 H -0.182 1.182 22 C -0.259 4.259 23 C -0.045 4.045 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.117 0.883 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.141 0.859 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.417 5.985 -9.566 13.504 hybrid contribution 0.512 -0.406 0.279 0.711 sum -6.906 5.578 -9.287 12.847 Atomic orbital electron populations 1.21711 0.92716 1.02722 1.02686 1.21612 0.98281 0.98066 0.97648 1.21748 1.01662 0.93487 1.03117 1.24582 0.86886 0.76758 0.88873 1.90425 1.56468 1.48043 1.34552 1.23226 0.97028 0.98978 0.86750 1.86704 1.38880 1.66444 1.34197 1.21695 0.77785 0.74967 0.88948 1.90699 1.49383 1.60651 1.43820 1.18189 0.99630 1.17982 0.91998 1.20448 0.93414 0.94315 0.96882 1.20978 1.01722 1.05719 0.91988 1.17860 0.90602 0.86311 0.92389 1.19950 0.92506 1.30859 1.02723 0.89403 1.26176 0.96150 0.94948 0.97771 1.69739 1.02478 1.30467 1.35865 0.86151 0.79044 0.80595 0.80192 1.18798 1.19902 1.18171 1.20731 0.99896 1.07720 0.97519 1.20600 0.96458 0.95026 0.92411 0.91510 0.91722 0.92236 0.88267 0.91858 0.91756 0.91129 0.88448 0.88454 0.88009 0.85889 0.89944 0.88151 0.87753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.73 37.16 0.32 -0.87 16 2 C -0.14 -1.20 3.18 -91.77 -0.29 -1.49 16 3 C -0.14 -1.06 9.17 37.15 0.34 -0.72 16 4 C 0.36 4.68 6.35 -29.04 -0.18 4.50 16 5 O -0.42 -7.20 16.24 -13.71 -0.22 -7.42 16 6 C 0.02 0.23 5.89 36.00 0.21 0.44 16 7 O -0.34 -6.87 8.98 -47.38 -0.43 -7.30 16 8 C 0.51 11.52 7.89 34.51 0.27 11.79 16 9 O -0.55 -12.84 16.11 -19.28 -0.31 -13.15 16 10 C -0.28 -6.62 5.89 -104.75 -0.62 -7.24 16 11 C -0.03 -0.78 9.52 -39.59 -0.38 -1.16 16 12 C -0.18 -4.71 8.63 -39.28 -0.34 -5.05 16 13 C 0.13 3.37 5.57 -106.80 -0.60 2.78 16 14 C -0.43 -10.69 9.04 -37.75 -0.34 -11.03 16 15 H 0.09 2.05 7.91 -52.49 -0.42 1.63 16 16 C 0.07 1.67 5.14 -17.31 -0.09 1.58 16 17 N -0.76 -18.33 10.95 55.56 0.61 -17.72 16 18 Si 0.92 17.09 29.60 -169.99 -5.03 12.06 16 19 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 20 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 21 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 22 C -0.24 -5.75 9.73 -39.27 -0.38 -6.13 16 23 C -0.03 -0.61 9.55 -39.59 -0.38 -0.99 16 24 H 0.07 0.64 7.87 -51.93 -0.41 0.23 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.10 2.40 7.63 -52.49 -0.40 2.00 16 34 H 0.12 3.15 6.16 -52.48 -0.32 2.83 16 35 H 0.29 6.22 8.29 -40.82 -0.34 5.88 16 36 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 37 H 0.10 2.26 7.59 -52.49 -0.40 1.87 16 LS Contribution 326.13 15.07 4.91 4.91 Total: -1.00 -29.47 326.13 -7.80 -37.27 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -4.88 Total: 4.94 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -2.45 Total: -13.59 kcal Atomic # 7 Polarization: -18.33 SS G_CDS: 0.61 Total: -17.72 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.96 Total: -27.87 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.47 -7.80 -37.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758697109.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.349 kcal (2) G-P(sol) polarization free energy of solvation -29.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds