Wall clock time and date at job start Mon Mar 30 2020 02:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47239 * 2 1 4 4 C 1.50702 * 109.47318 * 120.00485 * 2 1 3 5 5 O 1.20757 * 119.99727 * 334.99314 * 4 2 1 6 6 C 1.50693 * 120.00068 * 154.99823 * 4 2 1 7 7 O 1.45203 * 109.47408 * 179.97438 * 6 4 2 8 8 C 1.34771 * 117.00457 * 180.02562 * 7 6 4 9 9 O 1.21515 * 120.00026 * 359.97438 * 8 7 6 10 10 C 1.47501 * 120.00094 * 179.97438 * 8 7 6 11 11 C 1.40073 * 119.90212 * 180.02562 * 10 8 7 12 12 C 1.36300 * 120.10206 * 180.25905 * 11 10 8 13 13 C 1.40893 * 119.89711 * 359.51403 * 12 11 10 14 14 C 1.41091 * 120.10255 * 180.23496 * 13 12 11 15 15 H 1.08001 * 120.00415 * 204.81651 * 14 13 12 16 16 C 1.40248 * 119.99756 * 24.80634 * 14 13 12 17 17 N 1.30632 * 119.99956 * 17.73115 * 16 14 13 18 18 Si 1.86797 * 120.00167 * 197.73172 * 16 14 13 19 19 H 1.48501 * 109.47351 * 90.00385 * 18 16 14 20 20 H 1.48499 * 109.47050 * 210.00026 * 18 16 14 21 21 H 1.48500 * 109.47161 * 329.99778 * 18 16 14 22 22 C 1.40906 * 119.80286 * 0.50317 * 13 12 11 23 23 C 1.36297 * 119.89800 * 359.73440 * 22 13 12 24 24 H 1.08999 * 109.46864 * 299.99851 * 1 2 3 25 25 H 1.09003 * 109.47179 * 59.99967 * 1 2 3 26 26 H 1.09003 * 109.47076 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46864 * 240.00149 * 2 1 3 28 28 H 1.08999 * 109.47071 * 60.00276 * 3 2 1 29 29 H 1.08997 * 109.47418 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47569 * 300.00217 * 3 2 1 31 31 H 1.09003 * 109.47412 * 60.00006 * 6 4 2 32 32 H 1.09003 * 109.47594 * 299.99582 * 6 4 2 33 33 H 1.08002 * 119.94534 * 359.97438 * 11 10 8 34 34 H 1.08004 * 120.05042 * 179.74750 * 12 11 10 35 35 H 0.97000 * 120.00424 * 179.97438 * 17 16 14 36 36 H 1.07999 * 120.05172 * 179.70589 * 22 13 12 37 37 H 1.07997 * 119.94971 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 1.3401 -0.7703 2.2180 6 6 3.3987 -1.3462 1.2283 7 8 3.6482 -1.9618 2.5195 8 6 4.8353 -2.5780 2.6845 9 8 5.6398 -2.6008 1.7741 10 6 5.1581 -3.2248 3.9703 11 6 6.3928 -3.8643 4.1397 12 6 6.6932 -4.4679 5.3242 13 6 5.7637 -4.4391 6.3827 14 6 6.0722 -5.0582 7.6124 15 1 5.2777 -5.3946 8.2620 16 6 7.4107 -5.2370 7.9911 17 7 8.3527 -4.5461 7.4066 18 14 7.8464 -6.4629 9.3314 19 1 8.1006 -7.7931 8.7221 20 1 9.0654 -6.0042 10.0447 21 1 6.7196 -6.5662 10.2932 22 6 4.5228 -3.7950 6.2076 23 6 4.2289 -3.1982 5.0180 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9562 0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 4.1540 -0.5837 1.0377 32 1 3.4447 -2.1062 0.4483 33 1 7.1060 -3.8830 3.3288 34 1 7.6438 -4.9642 5.4526 35 1 9.2785 -4.6694 7.6687 36 1 3.8054 -3.7746 7.0147 37 1 3.2782 -2.7040 4.8830 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758697109.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:13 Heat of formation + Delta-G solvation = -137.448159 kcal Electronic energy + Delta-G solvation = -20184.546855 eV Core-core repulsion = 16890.561131 eV Total energy + Delta-G solvation = -3293.985725 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.55337 -40.56489 -39.24026 -37.21589 -35.79112 -35.52911 -32.23047 -31.54110 -30.32217 -28.09108 -27.82241 -24.70329 -23.63343 -22.88613 -21.62952 -20.28705 -19.44498 -18.73323 -18.06396 -17.60502 -17.26919 -16.90697 -16.04904 -15.93443 -15.76088 -15.21145 -14.97933 -14.70915 -14.09068 -14.06563 -14.02829 -13.65914 -13.55516 -13.27866 -13.10077 -12.96807 -12.87986 -12.67780 -12.42418 -12.10772 -11.96722 -11.83826 -11.77458 -11.45852 -11.35846 -11.18681 -10.61409 -9.66955 -9.56129 -8.87179 -6.57942 0.19768 0.79722 1.10930 1.35331 1.40561 1.54172 1.62354 1.85027 2.13884 2.65285 2.92355 3.59611 3.74143 3.95401 4.05949 4.10350 4.14698 4.23164 4.33696 4.40993 4.54569 4.75122 4.84301 4.89531 4.90225 4.95304 5.05691 5.11839 5.17843 5.27660 5.28793 5.32087 5.52395 5.74160 5.89159 5.94925 6.12325 6.38328 6.46351 6.67428 6.78983 6.95354 8.07752 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.046150 B = 0.003119 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.570509 B = 8974.818798 C = 9365.622255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.128 4.128 3 C -0.143 4.143 4 C 0.364 3.636 5 O -0.471 6.471 6 C 0.000 4.000 7 O -0.356 6.356 8 C 0.520 3.480 9 O -0.564 6.564 10 C -0.294 4.294 11 C -0.037 4.037 12 C -0.201 4.201 13 C 0.105 3.895 14 C -0.456 4.456 15 H 0.096 0.904 16 C 0.034 3.966 17 N -0.792 5.792 18 Si 0.994 3.006 19 H -0.259 1.259 20 H -0.265 1.265 21 H -0.252 1.252 22 C -0.251 4.251 23 C -0.024 4.024 24 H 0.048 0.952 25 H 0.092 0.908 26 H 0.052 0.948 27 H 0.130 0.870 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.300 0.700 36 H 0.115 0.885 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.829 6.152 -10.524 14.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.147 4.147 3 C -0.200 4.200 4 C 0.239 3.761 5 O -0.344 6.344 6 C -0.074 4.074 7 O -0.273 6.273 8 C 0.373 3.627 9 O -0.459 6.459 10 C -0.297 4.297 11 C -0.056 4.056 12 C -0.221 4.221 13 C 0.102 3.898 14 C -0.482 4.482 15 H 0.114 0.886 16 C -0.187 4.187 17 N -0.415 5.415 18 Si 0.813 3.187 19 H -0.183 1.183 20 H -0.189 1.189 21 H -0.175 1.175 22 C -0.270 4.270 23 C -0.042 4.042 24 H 0.067 0.933 25 H 0.111 0.889 26 H 0.071 0.929 27 H 0.148 0.852 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.115 0.885 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.123 0.877 34 H 0.132 0.868 35 H 0.111 0.889 36 H 0.133 0.867 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.753 6.214 -10.271 14.290 hybrid contribution 0.593 -0.393 0.405 0.818 sum -7.161 5.821 -9.866 13.509 Atomic orbital electron populations 1.21745 0.92426 1.02493 1.03216 1.21695 0.98403 0.98548 0.96019 1.21798 1.02009 0.92400 1.03788 1.25174 0.85558 0.75579 0.89760 1.90422 1.57417 1.50034 1.36560 1.23809 0.98792 0.99936 0.84844 1.86653 1.37248 1.66168 1.37239 1.21339 0.78389 0.74869 0.88151 1.90676 1.49998 1.61202 1.44052 1.18429 0.99600 1.18314 0.93310 1.20533 0.93963 0.94393 0.96730 1.20960 1.01720 1.06760 0.92619 1.18197 0.91340 0.87171 0.93089 1.20285 0.93861 1.31365 1.02728 0.88636 1.27101 0.95354 0.96202 1.00013 1.69769 1.03327 1.31337 1.37022 0.85012 0.79039 0.77681 0.76990 1.18349 1.18885 1.17543 1.20932 0.99915 1.07830 0.98303 1.20737 0.96839 0.94622 0.92035 0.93270 0.88876 0.92911 0.85172 0.93200 0.91287 0.88492 0.86681 0.86448 0.87691 0.86779 0.88856 0.86738 0.86348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.73 71.98 0.63 -1.47 16 2 C -0.13 -1.90 3.18 -11.54 -0.04 -1.94 16 3 C -0.14 -1.74 9.17 71.98 0.66 -1.08 16 4 C 0.36 9.12 6.35 29.10 0.18 9.31 16 5 O -0.47 -16.00 16.24 17.40 0.28 -15.71 16 6 C 0.00 0.01 5.89 71.23 0.42 0.43 16 7 O -0.36 -14.05 8.98 -50.41 -0.45 -14.51 16 8 C 0.52 23.29 7.89 70.26 0.55 23.85 16 9 O -0.56 -26.02 16.11 19.79 0.32 -25.70 16 10 C -0.29 -14.33 5.89 -19.95 -0.12 -14.45 16 11 C -0.04 -1.88 9.52 22.26 0.21 -1.67 16 12 C -0.20 -10.56 8.63 22.47 0.19 -10.36 16 13 C 0.11 5.51 5.57 -21.28 -0.12 5.39 16 14 C -0.46 -22.65 9.04 23.46 0.21 -22.44 16 15 H 0.10 4.44 7.91 -2.91 -0.02 4.42 16 16 C 0.03 1.54 5.14 85.36 0.44 1.98 16 17 N -0.79 -38.23 10.95 21.88 0.24 -37.99 16 18 Si 0.99 34.18 29.60 68.60 2.03 36.21 16 19 H -0.26 -8.70 7.11 99.48 0.71 -8.00 16 20 H -0.26 -8.63 7.11 99.48 0.71 -7.93 16 21 H -0.25 -8.38 7.11 99.48 0.71 -7.67 16 22 C -0.25 -12.21 9.73 22.47 0.22 -11.99 16 23 C -0.02 -1.12 9.55 22.26 0.21 -0.91 16 24 H 0.05 0.90 7.87 -2.39 -0.02 0.89 16 25 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.11 5.08 7.63 -2.91 -0.02 5.06 16 34 H 0.11 6.06 6.16 -2.91 -0.02 6.04 16 35 H 0.30 12.83 8.29 -92.71 -0.77 12.06 16 36 H 0.11 5.10 8.06 -2.91 -0.02 5.07 16 37 H 0.12 5.15 7.59 -2.91 -0.02 5.13 16 Total: -1.00 -64.55 326.13 7.15 -57.40 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 1.07 Total: 25.67 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: 3.66 Total: -25.36 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.24 Total: -37.99 kcal Atomic # 8 Polarization: -56.07 SS G_CDS: 0.15 Total: -55.92 kcal Atomic # 14 Polarization: 34.18 SS G_CDS: 2.03 Total: 36.21 kcal Total: -64.55 7.15 -57.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758697109.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.052 kcal (2) G-P(sol) polarization free energy of solvation -64.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds