Wall clock time and date at job start Mon Mar 30 2020 02:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.31003 * 119.99635 * 2 1 4 4 C 1.50696 * 120.00115 * 359.97438 * 3 2 1 5 5 O 1.45203 * 109.47037 * 135.00230 * 4 3 2 6 6 C 1.34230 * 117.00479 * 180.02562 * 5 4 3 7 7 O 1.20823 * 119.99459 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00327 * 179.97438 * 6 5 4 9 9 C 1.50699 * 109.47151 * 180.02562 * 8 6 5 10 10 C 1.38328 * 119.96224 * 270.02423 * 9 8 6 11 11 C 1.38281 * 120.13505 * 179.97438 * 10 9 8 12 12 C 1.38120 * 120.06679 * 359.68445 * 11 10 9 13 13 C 1.38852 * 119.93490 * 0.58817 * 12 11 10 14 14 O 1.35752 * 120.07221 * 179.70368 * 13 12 11 15 15 C 1.34829 * 116.99954 * 354.17311 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38656 * 119.99670 * 185.03445 * 15 14 13 18 18 N 1.31550 * 120.00275 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47010 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46908 * 119.99967 * 19 17 15 22 22 H 1.48504 * 109.47373 * 240.00300 * 19 17 15 23 23 C 1.38073 * 119.96539 * 89.99818 * 9 8 6 24 24 H 1.08999 * 109.46837 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47380 * 300.00362 * 1 2 3 26 26 H 1.08999 * 109.47073 * 60.00549 * 1 2 3 27 27 H 1.07999 * 120.00190 * 179.97438 * 2 1 3 28 28 H 1.07994 * 119.99538 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47454 * 15.00405 * 4 3 2 30 30 H 1.08993 * 109.47450 * 255.00122 * 4 3 2 31 31 H 1.09004 * 109.46756 * 59.99766 * 8 6 5 32 32 H 1.08998 * 109.46908 * 300.00408 * 8 6 5 33 33 H 1.08001 * 119.93314 * 359.97438 * 10 9 8 34 34 H 1.07993 * 119.96315 * 179.97438 * 11 10 9 35 35 H 1.08006 * 120.03715 * 180.31908 * 12 11 10 36 36 H 0.96999 * 119.99936 * 179.97438 * 18 17 15 37 37 H 1.07996 * 120.03547 * 0.04988 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1620 1.1346 0.0000 4 6 1.4085 2.4396 -0.0006 5 8 2.0044 3.3430 0.9674 6 6 1.4464 4.5575 1.0918 7 8 0.4913 4.8556 0.4145 8 6 2.0105 5.5487 2.0769 9 6 1.2090 6.8237 2.0214 10 6 1.5751 7.8323 1.1484 11 6 0.8419 9.0035 1.0942 12 6 -0.2625 9.1668 1.9074 13 6 -0.6292 8.1585 2.7888 14 8 -1.7107 8.3185 3.5936 15 6 -2.3136 9.5243 3.5761 16 1 -1.9834 10.2832 2.8822 17 6 -3.3577 9.7901 4.4489 18 7 -3.7596 8.8659 5.2945 19 14 -4.1926 11.4609 4.4251 20 1 -3.5582 12.3166 3.3904 21 1 -5.6336 11.2897 4.1098 22 1 -4.0501 12.1046 5.7558 23 6 0.1098 6.9835 2.8415 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 2.0471 -0.9353 0.0004 28 1 3.2419 1.1345 0.0004 29 1 0.3670 2.2580 0.2651 30 1 1.4575 2.8870 -0.9932 31 1 3.0494 5.7608 1.8243 32 1 1.9590 5.1310 3.0823 33 1 2.4353 7.7049 0.5079 34 1 1.1304 9.7894 0.4119 35 1 -0.8379 10.0797 1.8609 36 1 -4.4897 9.0520 5.9053 37 1 -0.1752 6.1958 3.5231 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760638547.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:03 Heat of formation + Delta-G solvation = -76.319867 kcal Electronic energy + Delta-G solvation = -20059.258141 eV Core-core repulsion = 16767.923138 eV Total energy + Delta-G solvation = -3291.335003 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.42239 -38.97153 -37.15542 -36.33889 -35.30474 -32.44988 -32.06255 -29.34292 -28.85902 -27.31880 -25.64731 -25.17152 -21.94726 -21.51372 -20.30848 -18.98828 -17.67986 -17.56822 -16.96771 -16.76117 -16.09397 -15.32513 -14.99500 -14.60675 -14.37143 -13.95787 -13.68923 -13.59506 -13.48141 -13.06504 -12.73827 -12.55039 -12.44225 -12.08161 -11.87085 -11.56353 -11.28438 -11.22654 -10.86692 -10.78611 -10.71364 -10.62967 -10.42144 -10.29802 -9.40435 -9.33098 -8.82951 -8.10780 -7.22515 -6.42851 -4.01902 1.65700 2.04909 2.37351 2.39975 3.00473 3.14757 3.15099 3.20765 3.98051 4.46492 4.60047 4.74879 4.86418 5.00411 5.01432 5.09453 5.11667 5.19356 5.32606 5.36705 5.50522 5.61388 5.65027 5.72692 5.75707 5.92464 6.16611 6.24788 6.32968 6.38839 6.49041 6.66060 6.90634 7.07576 7.23705 7.36358 7.43984 7.80798 7.92767 8.02085 9.02917 9.73187 10.75405 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.025093 B = 0.003319 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.570334 B = 8433.528577 C = 9191.710806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.141 4.141 3 C -0.164 4.164 4 C 0.090 3.910 5 O -0.360 6.360 6 C 0.459 3.541 7 O -0.490 6.490 8 C -0.064 4.064 9 C -0.044 4.044 10 C -0.195 4.195 11 C -0.074 4.074 12 C -0.228 4.228 13 C 0.154 3.846 14 O -0.179 6.179 15 C -0.391 4.391 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.172 4.172 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.127 0.873 36 H 0.269 0.731 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.664 -11.601 -8.458 18.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.159 4.159 3 C -0.182 4.182 4 C 0.017 3.983 5 O -0.278 6.278 6 C 0.301 3.699 7 O -0.375 6.375 8 C -0.101 4.101 9 C -0.045 4.045 10 C -0.214 4.214 11 C -0.093 4.093 12 C -0.247 4.247 13 C 0.101 3.899 14 O -0.082 6.082 15 C -0.467 4.467 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.498 5.498 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.201 1.201 23 C -0.191 4.191 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.136 0.864 28 H 0.138 0.862 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.145 0.855 36 H 0.079 0.921 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 11.045 -11.709 -8.346 18.131 hybrid contribution -0.486 0.806 -0.215 0.965 sum 10.559 -10.903 -8.561 17.426 Atomic orbital electron populations 1.20994 0.93109 1.02763 1.02565 1.22885 0.96502 0.97684 0.98841 1.22550 1.00384 0.92395 1.02904 1.22046 0.97025 0.87208 0.92022 1.86510 1.58008 1.25257 1.58004 1.23863 0.81863 0.81181 0.82981 1.90718 1.25921 1.77476 1.43418 1.20263 1.00519 0.90847 0.98496 1.18675 0.95506 0.93176 0.97100 1.20376 1.02863 0.95282 1.02845 1.20687 0.94554 0.96523 0.97510 1.21208 1.00856 1.01367 1.01257 1.19260 0.87322 0.93175 0.90173 1.83977 1.34835 1.34473 1.54962 1.21372 1.15312 0.89099 1.20941 0.89033 1.25284 0.96636 0.99535 0.95090 1.70047 1.26707 1.33156 1.19926 0.85648 0.79047 0.80196 0.78526 1.19111 1.20171 1.20146 1.19971 0.97049 0.97825 1.04288 0.91703 0.90992 0.91293 0.86390 0.86167 0.90270 0.90425 0.87165 0.87029 0.87734 0.87322 0.85494 0.92107 0.86629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.70 36.01 0.31 -0.75 16 2 C -0.14 -1.11 10.26 -36.02 -0.37 -1.48 16 3 C -0.16 -1.50 9.90 -36.03 -0.36 -1.85 16 4 C 0.09 1.04 5.59 36.00 0.20 1.24 16 5 O -0.36 -4.79 10.20 -39.26 -0.40 -5.19 16 6 C 0.46 7.08 7.95 36.01 0.29 7.36 16 7 O -0.49 -9.39 15.78 -18.75 -0.30 -9.69 16 8 C -0.06 -0.88 5.94 -29.04 -0.17 -1.05 16 9 C -0.04 -0.81 4.37 -104.65 -0.46 -1.27 16 10 C -0.19 -3.48 9.70 -39.53 -0.38 -3.86 16 11 C -0.07 -1.42 10.04 -39.61 -0.40 -1.81 16 12 C -0.23 -5.10 9.17 -39.40 -0.36 -5.46 16 13 C 0.15 3.84 6.65 -39.11 -0.26 3.58 16 14 O -0.18 -5.21 9.76 0.05 0.00 -5.21 16 15 C -0.39 -11.10 9.49 30.89 0.29 -10.81 16 16 H 0.09 2.41 5.21 -52.49 -0.27 2.14 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.59 13.67 55.48 0.76 -24.83 16 19 Si 0.94 20.76 29.55 -169.99 -5.02 15.74 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 C -0.17 -3.75 9.65 -39.39 -0.38 -4.13 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.62 7.49 -51.93 -0.39 0.23 16 26 H 0.07 0.53 8.01 -51.93 -0.42 0.11 16 27 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 28 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 29 H 0.08 0.94 5.97 -51.93 -0.31 0.63 16 30 H 0.08 0.88 8.13 -51.93 -0.42 0.46 16 31 H 0.11 1.18 8.09 -51.93 -0.42 0.76 16 32 H 0.11 1.33 8.08 -51.93 -0.42 0.91 16 33 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 35 H 0.13 2.83 5.64 -52.48 -0.30 2.53 16 36 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 326.55 15.07 4.92 4.92 Total: -1.00 -33.15 326.55 -6.80 -39.95 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -4.62 Total: 3.64 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -2.14 Total: -19.33 kcal Atomic # 7 Polarization: -25.59 SS G_CDS: 0.76 Total: -24.83 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.70 Total: -20.09 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.15 -6.80 -39.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760638547.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.367 kcal (2) G-P(sol) polarization free energy of solvation -33.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds