Wall clock time and date at job start Mon Mar 30 2020 02:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.31003 * 119.99635 * 2 1 4 4 C 1.50696 * 120.00115 * 359.97438 * 3 2 1 5 5 O 1.45203 * 109.47037 * 135.00230 * 4 3 2 6 6 C 1.34230 * 117.00479 * 180.02562 * 5 4 3 7 7 O 1.20823 * 119.99459 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00327 * 179.97438 * 6 5 4 9 9 C 1.50699 * 109.47151 * 180.02562 * 8 6 5 10 10 C 1.38328 * 119.96224 * 270.02423 * 9 8 6 11 11 C 1.38281 * 120.13505 * 179.97438 * 10 9 8 12 12 C 1.38120 * 120.06679 * 359.68445 * 11 10 9 13 13 C 1.38852 * 119.93490 * 0.58817 * 12 11 10 14 14 O 1.35752 * 120.07221 * 179.70368 * 13 12 11 15 15 C 1.34829 * 116.99954 * 354.17311 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38656 * 119.99670 * 185.03445 * 15 14 13 18 18 N 1.31550 * 120.00275 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47010 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46908 * 119.99967 * 19 17 15 22 22 H 1.48504 * 109.47373 * 240.00300 * 19 17 15 23 23 C 1.38073 * 119.96539 * 89.99818 * 9 8 6 24 24 H 1.08999 * 109.46837 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47380 * 300.00362 * 1 2 3 26 26 H 1.08999 * 109.47073 * 60.00549 * 1 2 3 27 27 H 1.07999 * 120.00190 * 179.97438 * 2 1 3 28 28 H 1.07994 * 119.99538 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47454 * 15.00405 * 4 3 2 30 30 H 1.08993 * 109.47450 * 255.00122 * 4 3 2 31 31 H 1.09004 * 109.46756 * 59.99766 * 8 6 5 32 32 H 1.08998 * 109.46908 * 300.00408 * 8 6 5 33 33 H 1.08001 * 119.93314 * 359.97438 * 10 9 8 34 34 H 1.07993 * 119.96315 * 179.97438 * 11 10 9 35 35 H 1.08006 * 120.03715 * 180.31908 * 12 11 10 36 36 H 0.96999 * 119.99936 * 179.97438 * 18 17 15 37 37 H 1.07996 * 120.03547 * 0.04988 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1620 1.1346 0.0000 4 6 1.4085 2.4396 -0.0006 5 8 2.0044 3.3430 0.9674 6 6 1.4464 4.5575 1.0918 7 8 0.4913 4.8556 0.4145 8 6 2.0105 5.5487 2.0769 9 6 1.2090 6.8237 2.0214 10 6 1.5751 7.8323 1.1484 11 6 0.8419 9.0035 1.0942 12 6 -0.2625 9.1668 1.9074 13 6 -0.6292 8.1585 2.7888 14 8 -1.7107 8.3185 3.5936 15 6 -2.3136 9.5243 3.5761 16 1 -1.9834 10.2832 2.8822 17 6 -3.3577 9.7901 4.4489 18 7 -3.7596 8.8659 5.2945 19 14 -4.1926 11.4609 4.4251 20 1 -3.5582 12.3166 3.3904 21 1 -5.6336 11.2897 4.1098 22 1 -4.0501 12.1046 5.7558 23 6 0.1098 6.9835 2.8415 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 2.0471 -0.9353 0.0004 28 1 3.2419 1.1345 0.0004 29 1 0.3670 2.2580 0.2651 30 1 1.4575 2.8870 -0.9932 31 1 3.0494 5.7608 1.8243 32 1 1.9590 5.1310 3.0823 33 1 2.4353 7.7049 0.5079 34 1 1.1304 9.7894 0.4119 35 1 -0.8379 10.0797 1.8609 36 1 -4.4897 9.0520 5.9053 37 1 -0.1752 6.1958 3.5231 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760638547.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:03 Heat of formation + Delta-G solvation = -95.653738 kcal Electronic energy + Delta-G solvation = -20060.096521 eV Core-core repulsion = 16767.923138 eV Total energy + Delta-G solvation = -3292.173383 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.65091 -40.68329 -38.57344 -37.73679 -36.16550 -34.36203 -33.61032 -30.97452 -29.85432 -28.57581 -27.30626 -26.38473 -23.45021 -23.09669 -21.76005 -19.79402 -19.43956 -18.79029 -18.75269 -17.80818 -17.19958 -16.77440 -16.40885 -16.16140 -15.98988 -15.49788 -15.08110 -14.86382 -14.51884 -14.30213 -14.07176 -13.93276 -13.71289 -13.58332 -12.99145 -12.90747 -12.67976 -12.52427 -12.42834 -12.25441 -12.09010 -12.05951 -11.68460 -11.55794 -11.21942 -10.81952 -10.10567 -9.70746 -9.01106 -8.47669 -6.16297 0.40494 0.72364 1.00305 1.19507 1.34361 1.42873 1.53040 1.93831 2.17212 2.83548 3.15819 3.39301 3.68189 3.80770 4.01617 4.03600 4.08146 4.24959 4.29366 4.37271 4.39355 4.39755 4.54230 4.60714 4.71019 4.71899 4.96333 5.02597 5.08468 5.11961 5.26359 5.40920 5.60292 5.61419 5.69202 5.71856 5.74920 6.01820 6.20101 6.74784 6.96961 7.77828 8.76031 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.025093 B = 0.003319 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.570334 B = 8433.528577 C = 9191.710806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C -0.179 4.179 4 C 0.085 3.915 5 O -0.352 6.352 6 C 0.465 3.535 7 O -0.536 6.536 8 C -0.062 4.062 9 C -0.038 4.038 10 C -0.176 4.176 11 C -0.073 4.073 12 C -0.242 4.242 13 C 0.112 3.888 14 O -0.234 6.234 15 C -0.414 4.414 16 H 0.101 0.899 17 C -0.024 4.024 18 N -0.922 5.922 19 Si 1.020 2.980 20 H -0.251 1.251 21 H -0.269 1.269 22 H -0.266 1.266 23 C -0.190 4.190 24 H 0.081 0.919 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.143 0.857 28 H 0.135 0.865 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.156 0.844 32 H 0.132 0.868 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.119 0.881 36 H 0.273 0.727 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.392 -11.816 -10.175 21.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.147 4.147 3 C -0.197 4.197 4 C 0.012 3.988 5 O -0.269 6.269 6 C 0.309 3.691 7 O -0.425 6.425 8 C -0.098 4.098 9 C -0.038 4.038 10 C -0.195 4.195 11 C -0.091 4.091 12 C -0.261 4.261 13 C 0.062 3.938 14 O -0.141 6.141 15 C -0.490 4.490 16 H 0.119 0.881 17 C -0.221 4.221 18 N -0.560 5.560 19 Si 0.839 3.161 20 H -0.175 1.175 21 H -0.194 1.194 22 H -0.191 1.191 23 C -0.209 4.209 24 H 0.100 0.900 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.161 0.839 28 H 0.153 0.847 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.174 0.826 32 H 0.150 0.850 33 H 0.169 0.831 34 H 0.166 0.834 35 H 0.137 0.863 36 H 0.082 0.918 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 13.842 -11.953 -10.093 20.889 hybrid contribution -1.072 0.658 0.138 1.266 sum 12.770 -11.295 -9.956 19.742 Atomic orbital electron populations 1.21055 0.93456 1.03654 1.01859 1.23154 0.96448 0.98324 0.96736 1.22556 1.00988 0.91322 1.04787 1.22231 0.97053 0.88047 0.91498 1.86503 1.57549 1.24597 1.58280 1.24093 0.80961 0.81765 0.82279 1.90717 1.27934 1.78433 1.45454 1.20395 1.01731 0.88320 0.99391 1.19138 0.94072 0.95314 0.95269 1.21018 1.03030 0.93905 1.01502 1.21151 0.92947 0.98143 0.96811 1.21344 1.02318 1.00634 1.01854 1.19851 0.87630 0.95267 0.91070 1.83937 1.37333 1.35260 1.57572 1.21869 1.15940 0.89546 1.21618 0.88135 1.26612 0.97071 1.04110 0.94330 1.70192 1.28154 1.35981 1.21666 0.84512 0.77744 0.74615 0.79196 1.17464 1.19419 1.19127 1.20242 0.98311 0.96885 1.05472 0.90049 0.92220 0.91548 0.83922 0.84734 0.91275 0.90511 0.82591 0.85005 0.83119 0.83426 0.86299 0.91839 0.87314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.70 71.24 0.62 -1.44 16 2 C -0.13 -1.74 10.26 25.65 0.26 -1.47 16 3 C -0.18 -2.88 9.90 25.64 0.25 -2.63 16 4 C 0.08 1.86 5.59 71.23 0.40 2.26 16 5 O -0.35 -8.64 10.20 -51.42 -0.52 -9.17 16 6 C 0.46 13.38 7.95 71.24 0.57 13.94 16 7 O -0.54 -20.17 15.78 21.97 0.35 -19.82 16 8 C -0.06 -1.49 5.94 29.10 0.17 -1.32 16 9 C -0.04 -1.30 4.37 -19.88 -0.09 -1.38 16 10 C -0.18 -5.61 9.70 22.30 0.22 -5.39 16 11 C -0.07 -2.57 10.04 22.25 0.22 -2.35 16 12 C -0.24 -10.98 9.17 22.39 0.21 -10.78 16 13 C 0.11 5.82 6.65 22.58 0.15 5.97 16 14 O -0.23 -14.60 9.76 -22.74 -0.22 -14.82 16 15 C -0.41 -24.77 9.49 67.92 0.64 -24.13 16 16 H 0.10 5.54 5.21 -2.91 -0.02 5.53 16 17 C -0.02 -1.40 5.49 84.83 0.47 -0.93 16 18 N -0.92 -57.69 13.67 21.61 0.30 -57.40 16 19 Si 1.02 43.74 29.55 68.60 2.03 45.77 16 20 H -0.25 -9.95 7.11 99.48 0.71 -9.25 16 21 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 22 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 23 C -0.19 -8.46 9.65 22.39 0.22 -8.24 16 24 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.06 1.01 7.49 -2.39 -0.02 0.99 16 26 H 0.07 0.98 8.01 -2.39 -0.02 0.96 16 27 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 28 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 29 H 0.07 1.64 5.97 -2.39 -0.01 1.63 16 30 H 0.08 1.67 8.13 -2.39 -0.02 1.65 16 31 H 0.16 2.41 8.09 -2.38 -0.02 2.40 16 32 H 0.13 2.73 8.08 -2.39 -0.02 2.71 16 33 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 34 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 35 H 0.12 5.45 5.64 -2.91 -0.02 5.43 16 36 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 37 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -78.19 326.55 7.30 -70.88 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 1.07 Total: 22.45 kcal Atomic # 6 Polarization: -42.20 SS G_CDS: 4.31 Total: -37.89 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.30 Total: -57.40 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -0.40 Total: -43.81 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -78.19 7.30 -70.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760638547.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.770 kcal (2) G-P(sol) polarization free energy of solvation -78.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds