Wall clock time and date at job start Mon Mar 30 2020 01:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 115.55653 * 2 1 4 4 O 1.20821 * 119.99844 * 214.41672 * 3 2 1 5 5 O 1.34228 * 119.99720 * 34.40994 * 3 2 1 6 6 C 1.45207 * 116.99916 * 180.02562 * 5 3 2 7 7 C 1.50698 * 109.47029 * 180.02562 * 6 5 3 8 8 C 1.38297 * 119.93202 * 89.99914 * 7 6 5 9 9 C 1.38101 * 120.07230 * 180.02562 * 8 7 6 10 10 C 1.38886 * 119.92536 * 359.97438 * 9 8 7 11 11 O 1.35750 * 120.06440 * 180.02562 * 10 9 8 12 12 C 1.34828 * 117.00075 * 5.53777 * 11 10 9 13 13 H 1.07993 * 120.00518 * 354.94289 * 12 11 10 14 14 C 1.38663 * 119.99751 * 174.94575 * 12 11 10 15 15 N 1.31556 * 120.00220 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99821 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47517 * 59.99414 * 16 14 12 18 18 H 1.48505 * 109.47332 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46989 * 299.99567 * 16 14 12 20 20 C 1.38874 * 119.86623 * 0.27854 * 10 9 8 21 21 C 1.38110 * 119.92772 * 359.48927 * 20 10 9 22 22 C 1.53007 * 117.49312 * 145.66822 * 2 1 3 23 23 C 1.53002 * 117.49665 * 214.32579 * 2 1 3 24 24 H 1.09004 * 109.46973 * 85.58487 * 1 2 3 25 25 H 1.08996 * 109.47631 * 205.58554 * 1 2 3 26 26 H 1.09001 * 109.46681 * 325.59136 * 1 2 3 27 27 H 1.09003 * 109.46774 * 59.99981 * 6 5 3 28 28 H 1.09004 * 109.46814 * 300.00199 * 6 5 3 29 29 H 1.07999 * 119.96698 * 0.02562 * 8 7 6 30 30 H 1.07992 * 120.03608 * 179.97438 * 9 8 7 31 31 H 0.96996 * 120.00178 * 179.97438 * 15 14 12 32 32 H 1.07996 * 120.03745 * 179.72497 * 20 10 9 33 33 H 1.07996 * 119.96227 * 180.23396 * 21 20 10 34 34 H 1.09001 * 117.49659 * 214.99988 * 22 2 1 35 35 H 1.08992 * 117.50126 * 0.02562 * 22 2 1 36 36 H 1.08999 * 117.49781 * 359.97438 * 23 2 1 37 37 H 1.08993 * 117.50013 * 145.00313 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1801 1.3595 0.0000 4 8 3.2194 1.5321 -0.5914 5 8 1.6044 2.3787 0.6569 6 6 2.2862 3.6600 0.6135 7 6 1.4985 4.6751 1.4011 8 6 1.7496 4.8478 2.7501 9 6 1.0291 5.7768 3.4747 10 6 0.0519 6.5384 2.8471 11 8 -0.6576 7.4527 3.5566 12 6 -0.2880 7.6545 4.8374 13 1 0.4846 7.0429 5.2793 14 6 -0.9001 8.6473 5.5874 15 7 -1.8411 9.3926 5.0491 16 14 -0.3876 8.9273 7.3617 17 1 1.0546 9.2780 7.4110 18 1 -1.1867 10.0382 7.9384 19 1 -0.6228 7.6886 8.1463 20 6 -0.2016 6.3589 1.4935 21 6 0.5257 5.4316 0.7734 22 6 2.2363 -1.1208 0.7655 23 6 2.2364 -1.1208 -0.7653 24 1 -0.3633 0.0791 -1.0247 25 1 -0.3634 -0.9268 0.4438 26 1 -0.3633 0.8479 0.5807 27 1 2.3730 3.9905 -0.4216 28 1 3.2811 3.5570 1.0467 29 1 2.5099 4.2555 3.2374 30 1 1.2254 5.9108 4.5281 31 1 -2.2695 10.0868 5.5739 32 1 -0.9639 6.9465 1.0038 33 1 0.3316 5.2943 -0.2801 34 1 3.1712 -0.8748 1.2690 35 1 1.6111 -1.8583 1.2686 36 1 1.6111 -1.8584 -1.2684 37 1 3.1713 -0.8749 -1.2688 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761423603.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:51 Heat of formation + Delta-G solvation = -67.425800 kcal Electronic energy + Delta-G solvation = -20168.852055 eV Core-core repulsion = 16877.902728 eV Total energy + Delta-G solvation = -3290.949327 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.66516 -39.12651 -37.79519 -36.69181 -35.90025 -32.44930 -30.65218 -30.24809 -28.94035 -26.26243 -25.15182 -23.63364 -22.82564 -22.06621 -20.61770 -19.80437 -18.08632 -17.38833 -17.18054 -16.64048 -16.22382 -14.99776 -14.78358 -14.61462 -14.37034 -13.85270 -13.66197 -13.45733 -13.34429 -12.92663 -12.78262 -12.62795 -12.36877 -12.20311 -11.83136 -11.73342 -11.40588 -11.03064 -10.91987 -10.82163 -10.74021 -10.52363 -10.44389 -10.33000 -10.27159 -9.42535 -8.91141 -8.27464 -7.33962 -6.53013 -4.11780 1.92960 2.06980 2.14917 2.88664 3.09378 3.11554 3.13273 3.47159 3.90645 4.28789 4.42219 4.50271 4.61081 4.79432 5.01919 5.15525 5.20224 5.24149 5.27280 5.36683 5.49381 5.54499 5.56992 5.64150 5.69750 5.76482 5.78393 6.01651 6.12325 6.32606 6.52784 6.59077 6.80220 6.96103 7.14314 7.26360 7.34796 7.70888 7.81130 7.91667 8.92069 9.59968 10.64401 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.033555 B = 0.003107 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.255038 B = 9011.132736 C = 9196.853158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.143 4.143 3 C 0.494 3.506 4 O -0.517 6.517 5 O -0.343 6.343 6 C 0.129 3.871 7 C -0.204 4.204 8 C -0.044 4.044 9 C -0.238 4.238 10 C 0.163 3.837 11 O -0.171 6.171 12 C -0.394 4.394 13 H 0.093 0.907 14 C 0.041 3.959 15 N -0.859 5.859 16 Si 0.942 3.058 17 H -0.269 1.269 18 H -0.277 1.277 19 H -0.269 1.269 20 C -0.196 4.196 21 C -0.048 4.048 22 C -0.147 4.147 23 C -0.146 4.146 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.108 0.892 30 H 0.130 0.870 31 H 0.272 0.728 32 H 0.120 0.880 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.643 -16.672 -7.339 19.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.144 4.144 3 C 0.338 3.662 4 O -0.406 6.406 5 O -0.259 6.259 6 C 0.057 3.943 7 C -0.205 4.205 8 C -0.063 4.063 9 C -0.257 4.257 10 C 0.109 3.891 11 O -0.074 6.074 12 C -0.470 4.470 13 H 0.111 0.889 14 C -0.164 4.164 15 N -0.493 5.493 16 Si 0.767 3.233 17 H -0.194 1.194 18 H -0.202 1.202 19 H -0.194 1.194 20 C -0.215 4.215 21 C -0.067 4.067 22 C -0.184 4.184 23 C -0.182 4.182 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.126 0.874 30 H 0.147 0.853 31 H 0.082 0.918 32 H 0.138 0.862 33 H 0.131 0.869 34 H 0.119 0.881 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.587 -16.197 -7.471 18.692 hybrid contribution 0.403 0.278 0.900 1.025 sum 5.990 -15.919 -6.571 18.234 Atomic orbital electron populations 1.21349 0.89385 1.03599 1.02845 1.21040 0.96716 0.86377 1.10234 1.22407 0.82511 0.86050 0.75249 1.90630 1.23608 1.84260 1.42089 1.86628 1.52725 1.19684 1.66910 1.21723 0.94331 0.78287 1.00004 1.18856 1.04720 1.02186 0.94758 1.20614 0.97232 0.95771 0.92662 1.21139 1.01689 1.01759 1.01123 1.19440 0.89520 0.88984 0.91201 1.83976 1.49176 1.49628 1.24610 1.21328 1.22384 1.18682 0.84637 0.88920 1.25324 0.95825 0.94923 1.00347 1.70025 1.22761 1.19250 1.37296 0.85757 0.78857 0.78551 0.80160 1.19406 1.20195 1.19390 1.20191 1.05089 1.04222 0.92021 1.20507 0.93551 0.94184 0.98419 1.23190 1.02087 0.98028 0.95063 1.23164 1.02630 0.97893 0.94560 0.91719 0.91466 0.90236 0.91180 0.91279 0.87355 0.85266 0.91795 0.86190 0.86891 0.88145 0.87209 0.87413 0.87356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 9.81 37.16 0.36 -0.68 16 2 C -0.14 -1.50 2.64 -155.66 -0.41 -1.91 16 3 C 0.49 6.98 7.49 36.00 0.27 7.25 16 4 O -0.52 -8.33 16.01 -18.75 -0.30 -8.64 16 5 O -0.34 -5.26 9.48 -39.25 -0.37 -5.63 16 6 C 0.13 1.97 5.59 36.00 0.20 2.17 16 7 C -0.20 -3.58 5.52 -104.58 -0.58 -4.16 16 8 C -0.04 -0.82 9.69 -39.61 -0.38 -1.20 16 9 C -0.24 -5.09 9.17 -39.39 -0.36 -5.45 16 10 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 11 O -0.17 -4.81 9.76 0.05 0.00 -4.81 16 12 C -0.39 -10.81 9.49 30.89 0.29 -10.52 16 13 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16 14 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 15 N -0.86 -24.76 13.67 55.48 0.76 -24.01 16 16 Si 0.94 20.09 29.55 -169.99 -5.02 15.07 16 17 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 18 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 19 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 20 C -0.20 -4.08 9.99 -39.39 -0.39 -4.47 16 21 C -0.05 -0.86 9.69 -39.60 -0.38 -1.25 16 22 C -0.15 -1.23 9.88 -26.69 -0.26 -1.49 16 23 C -0.15 -1.23 9.77 -26.69 -0.26 -1.49 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.48 7.90 -51.93 -0.41 0.07 16 26 H 0.08 0.85 7.50 -51.93 -0.39 0.46 16 27 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 28 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 29 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 30 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 31 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 33 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.11 0.69 8.05 -51.93 -0.42 0.28 16 36 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.11 1.02 7.67 -51.93 -0.40 0.62 16 LS Contribution 325.68 15.07 4.91 4.91 Total: -1.00 -31.05 325.68 -6.99 -38.04 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -4.70 Total: 3.64 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -2.26 Total: -18.57 kcal Atomic # 7 Polarization: -24.76 SS G_CDS: 0.76 Total: -24.01 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.67 Total: -19.07 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.05 -6.99 -38.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761423603.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.385 kcal (2) G-P(sol) polarization free energy of solvation -31.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds