Wall clock time and date at job start Mon Mar 30 2020 01:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 115.55653 * 2 1 4 4 O 1.20821 * 119.99844 * 214.41672 * 3 2 1 5 5 O 1.34228 * 119.99720 * 34.40994 * 3 2 1 6 6 C 1.45207 * 116.99916 * 180.02562 * 5 3 2 7 7 C 1.50698 * 109.47029 * 180.02562 * 6 5 3 8 8 C 1.38297 * 119.93202 * 89.99914 * 7 6 5 9 9 C 1.38101 * 120.07230 * 180.02562 * 8 7 6 10 10 C 1.38886 * 119.92536 * 359.97438 * 9 8 7 11 11 O 1.35750 * 120.06440 * 180.02562 * 10 9 8 12 12 C 1.34828 * 117.00075 * 5.53777 * 11 10 9 13 13 H 1.07993 * 120.00518 * 354.94289 * 12 11 10 14 14 C 1.38663 * 119.99751 * 174.94575 * 12 11 10 15 15 N 1.31556 * 120.00220 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99821 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47517 * 59.99414 * 16 14 12 18 18 H 1.48505 * 109.47332 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46989 * 299.99567 * 16 14 12 20 20 C 1.38874 * 119.86623 * 0.27854 * 10 9 8 21 21 C 1.38110 * 119.92772 * 359.48927 * 20 10 9 22 22 C 1.53007 * 117.49312 * 145.66822 * 2 1 3 23 23 C 1.53002 * 117.49665 * 214.32579 * 2 1 3 24 24 H 1.09004 * 109.46973 * 85.58487 * 1 2 3 25 25 H 1.08996 * 109.47631 * 205.58554 * 1 2 3 26 26 H 1.09001 * 109.46681 * 325.59136 * 1 2 3 27 27 H 1.09003 * 109.46774 * 59.99981 * 6 5 3 28 28 H 1.09004 * 109.46814 * 300.00199 * 6 5 3 29 29 H 1.07999 * 119.96698 * 0.02562 * 8 7 6 30 30 H 1.07992 * 120.03608 * 179.97438 * 9 8 7 31 31 H 0.96996 * 120.00178 * 179.97438 * 15 14 12 32 32 H 1.07996 * 120.03745 * 179.72497 * 20 10 9 33 33 H 1.07996 * 119.96227 * 180.23396 * 21 20 10 34 34 H 1.09001 * 117.49659 * 214.99988 * 22 2 1 35 35 H 1.08992 * 117.50126 * 0.02562 * 22 2 1 36 36 H 1.08999 * 117.49781 * 359.97438 * 23 2 1 37 37 H 1.08993 * 117.50013 * 145.00313 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1801 1.3595 0.0000 4 8 3.2194 1.5321 -0.5914 5 8 1.6044 2.3787 0.6569 6 6 2.2862 3.6600 0.6135 7 6 1.4985 4.6751 1.4011 8 6 1.7496 4.8478 2.7501 9 6 1.0291 5.7768 3.4747 10 6 0.0519 6.5384 2.8471 11 8 -0.6576 7.4527 3.5566 12 6 -0.2880 7.6545 4.8374 13 1 0.4846 7.0429 5.2793 14 6 -0.9001 8.6473 5.5874 15 7 -1.8411 9.3926 5.0491 16 14 -0.3876 8.9273 7.3617 17 1 1.0546 9.2780 7.4110 18 1 -1.1867 10.0382 7.9384 19 1 -0.6228 7.6886 8.1463 20 6 -0.2016 6.3589 1.4935 21 6 0.5257 5.4316 0.7734 22 6 2.2363 -1.1208 0.7655 23 6 2.2364 -1.1208 -0.7653 24 1 -0.3633 0.0791 -1.0247 25 1 -0.3634 -0.9268 0.4438 26 1 -0.3633 0.8479 0.5807 27 1 2.3730 3.9905 -0.4216 28 1 3.2811 3.5570 1.0467 29 1 2.5099 4.2555 3.2374 30 1 1.2254 5.9108 4.5281 31 1 -2.2695 10.0868 5.5739 32 1 -0.9639 6.9465 1.0038 33 1 0.3316 5.2943 -0.2801 34 1 3.1712 -0.8748 1.2690 35 1 1.6111 -1.8583 1.2686 36 1 1.6111 -1.8584 -1.2684 37 1 3.1713 -0.8749 -1.2688 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761423603.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:50 Heat of formation + Delta-G solvation = -84.305312 kcal Electronic energy + Delta-G solvation = -20169.584006 eV Core-core repulsion = 16877.902728 eV Total energy + Delta-G solvation = -3291.681278 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.76546 -40.81813 -38.92601 -38.08910 -37.12407 -34.38091 -32.19333 -31.85414 -29.68338 -27.89162 -26.79156 -24.75546 -23.71267 -23.45322 -22.21172 -20.81096 -19.91399 -18.94201 -18.41818 -17.75901 -17.43415 -16.45449 -16.32024 -16.10705 -15.58819 -15.39295 -15.25859 -14.70561 -14.40150 -14.38434 -14.06421 -13.76413 -13.50818 -13.33985 -13.30069 -13.03116 -12.61487 -12.46067 -12.41781 -12.28129 -12.14616 -11.73030 -11.69498 -11.30263 -11.22975 -11.02279 -10.81810 -9.86517 -9.08233 -8.49856 -6.18554 0.40611 0.53184 1.02845 1.35591 1.44753 1.51743 1.75521 2.16595 2.74089 2.80048 3.12146 3.43037 3.54953 3.68170 3.84796 3.87240 3.87693 3.94623 4.12187 4.26402 4.36341 4.52289 4.67579 4.71426 4.76269 4.87896 4.91925 4.92957 4.96429 5.10359 5.17046 5.19975 5.30826 5.38415 5.50167 5.63635 5.66371 5.98750 6.09285 6.69365 6.94395 7.71945 8.72656 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.033555 B = 0.003107 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.255038 B = 9011.132736 C = 9196.853158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.164 4.164 3 C 0.492 3.508 4 O -0.541 6.541 5 O -0.352 6.352 6 C 0.129 3.871 7 C -0.182 4.182 8 C -0.043 4.043 9 C -0.245 4.245 10 C 0.127 3.873 11 O -0.225 6.225 12 C -0.418 4.418 13 H 0.104 0.896 14 C -0.020 4.020 15 N -0.918 5.918 16 Si 1.019 2.981 17 H -0.257 1.257 18 H -0.272 1.272 19 H -0.256 1.256 20 C -0.205 4.205 21 C -0.041 4.041 22 C -0.136 4.136 23 C -0.134 4.134 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.140 0.860 30 H 0.125 0.875 31 H 0.274 0.726 32 H 0.120 0.880 33 H 0.149 0.851 34 H 0.093 0.907 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.074 -19.644 -7.774 22.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.166 4.166 3 C 0.337 3.663 4 O -0.432 6.432 5 O -0.268 6.268 6 C 0.057 3.943 7 C -0.183 4.183 8 C -0.061 4.061 9 C -0.264 4.264 10 C 0.076 3.924 11 O -0.131 6.131 12 C -0.493 4.493 13 H 0.122 0.878 14 C -0.218 4.218 15 N -0.555 5.555 16 Si 0.838 3.162 17 H -0.181 1.181 18 H -0.196 1.196 19 H -0.180 1.180 20 C -0.224 4.224 21 C -0.059 4.059 22 C -0.173 4.173 23 C -0.171 4.171 24 H 0.089 0.911 25 H 0.109 0.891 26 H 0.077 0.923 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.158 0.842 30 H 0.143 0.857 31 H 0.083 0.917 32 H 0.138 0.862 33 H 0.167 0.833 34 H 0.112 0.888 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.046 -19.221 -7.943 21.959 hybrid contribution 0.121 0.925 0.739 1.190 sum 7.168 -18.296 -7.204 20.929 Atomic orbital electron populations 1.21341 0.88313 1.03948 1.03136 1.21208 0.97495 0.84838 1.13015 1.23134 0.82224 0.86730 0.74208 1.90619 1.24797 1.84662 1.43112 1.86606 1.52961 1.19827 1.67443 1.21673 0.94166 0.78129 1.00381 1.19226 1.03137 1.01417 0.94523 1.20947 0.97174 0.94925 0.93079 1.21246 1.01654 1.02198 1.01288 1.19983 0.90725 0.89346 0.92372 1.83948 1.51624 1.52231 1.25299 1.21830 1.23024 1.19400 0.85093 0.87846 1.26609 0.95619 0.94288 1.05287 1.70170 1.25067 1.20806 1.39499 0.84647 0.78875 0.78870 0.73847 1.18147 1.19626 1.18030 1.20442 1.05679 1.05007 0.91305 1.20888 0.92448 0.92617 0.99955 1.23359 1.01783 0.96910 0.95254 1.23277 1.02086 0.96910 0.94842 0.91122 0.89123 0.92258 0.89867 0.90142 0.84196 0.85710 0.91682 0.86164 0.83348 0.88808 0.84610 0.84695 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 9.81 71.98 0.71 -0.99 16 2 C -0.16 -3.01 2.64 -52.93 -0.14 -3.15 16 3 C 0.49 12.79 7.49 71.24 0.53 13.32 16 4 O -0.54 -16.41 16.01 21.98 0.35 -16.06 16 5 O -0.35 -9.90 9.48 -51.40 -0.49 -10.38 16 6 C 0.13 3.55 5.59 71.24 0.40 3.95 16 7 C -0.18 -5.94 5.52 -19.84 -0.11 -6.05 16 8 C -0.04 -1.51 9.69 22.25 0.22 -1.29 16 9 C -0.24 -10.53 9.17 22.39 0.21 -10.33 16 10 C 0.13 6.25 6.65 22.58 0.15 6.40 16 11 O -0.23 -13.37 9.76 -22.72 -0.22 -13.59 16 12 C -0.42 -23.97 9.49 67.92 0.64 -23.32 16 13 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 14 C -0.02 -1.12 5.49 84.84 0.47 -0.65 16 15 N -0.92 -55.67 13.67 21.62 0.30 -55.38 16 16 Si 1.02 42.07 29.55 68.60 2.03 44.09 16 17 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 18 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 19 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 20 C -0.21 -8.62 9.99 22.39 0.22 -8.40 16 21 C -0.04 -1.39 9.69 22.25 0.22 -1.18 16 22 C -0.14 -1.82 9.88 30.62 0.30 -1.52 16 23 C -0.13 -1.84 9.77 30.62 0.30 -1.54 16 24 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 25 H 0.09 0.95 7.90 -2.39 -0.02 0.93 16 26 H 0.06 1.15 7.50 -2.39 -0.02 1.13 16 27 H 0.08 2.12 8.08 -2.39 -0.02 2.10 16 28 H 0.08 2.08 8.08 -2.39 -0.02 2.06 16 29 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 30 H 0.13 5.39 5.64 -2.91 -0.02 5.38 16 31 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 32 H 0.12 4.94 8.06 -2.91 -0.02 4.91 16 33 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.14 1.12 8.05 -2.39 -0.02 1.10 16 36 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.10 1.58 7.67 -2.39 -0.02 1.56 16 Total: -1.00 -71.43 325.68 7.15 -64.28 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 1.08 Total: 21.79 kcal Atomic # 6 Polarization: -38.85 SS G_CDS: 4.11 Total: -34.74 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.30 Total: -55.38 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -0.36 Total: -40.04 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -71.43 7.15 -64.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761423603.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.029 kcal (2) G-P(sol) polarization free energy of solvation -71.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds