Wall clock time and date at job start Mon Mar 30 2020 02:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46718 * 2 1 4 4 O 1.45199 * 109.46907 * 120.00094 * 2 1 3 5 5 C 1.34755 * 116.99642 * 269.99650 * 4 2 1 6 6 O 1.21516 * 120.00613 * 0.02562 * 5 4 2 7 7 C 1.47406 * 119.99639 * 180.02562 * 5 4 2 8 8 C 1.39723 * 120.20222 * 0.27620 * 7 5 4 9 9 C 1.37804 * 119.91132 * 180.27304 * 8 7 5 10 10 C 1.38590 * 120.33478 * 359.70564 * 9 8 7 11 11 C 1.38027 * 120.40963 * 0.02562 * 10 9 8 12 12 C 1.38837 * 120.07780 * 0.02562 * 11 10 9 13 13 O 1.35504 * 120.16263 * 179.97438 * 12 11 10 14 14 C 1.34813 * 117.00336 * 5.59565 * 13 12 11 15 15 H 1.08003 * 119.99735 * 354.93370 * 14 13 12 16 16 C 1.38701 * 120.00240 * 174.93697 * 14 13 12 17 17 N 1.31521 * 119.99788 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00110 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47373 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47338 * 120.00001 * 18 16 14 21 21 H 1.48506 * 109.47195 * 239.99990 * 18 16 14 22 22 C 1.52997 * 109.46640 * 240.00161 * 2 1 3 23 23 C 1.53002 * 117.49698 * 248.61680 * 22 2 1 24 24 C 1.52998 * 60.00270 * 252.51384 * 23 22 2 25 25 H 1.08998 * 109.47316 * 59.99687 * 1 2 3 26 26 H 1.09002 * 109.47141 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46981 * 300.00113 * 1 2 3 28 28 H 1.07998 * 120.04994 * 0.02562 * 8 7 5 29 29 H 1.08006 * 119.83366 * 179.72174 * 9 8 7 30 30 H 1.07992 * 119.79673 * 180.02562 * 10 9 8 31 31 H 1.07997 * 119.95774 * 180.02562 * 11 10 9 32 32 H 0.97001 * 119.99771 * 180.02562 * 17 16 14 33 33 H 1.09004 * 115.55476 * 34.32857 * 22 2 1 34 34 H 1.08998 * 117.49743 * 0.02562 * 23 22 2 35 35 H 1.08999 * 117.49698 * 145.02246 * 23 22 2 36 36 H 1.08991 * 117.49929 * 252.50960 * 24 23 22 37 37 H 1.09005 * 117.49579 * 107.48808 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2179 0.0670 2.2854 6 8 1.9970 1.2615 2.2547 7 6 2.7091 -0.5601 3.5257 8 6 2.9700 -1.9322 3.5640 9 6 3.4237 -2.5131 4.7284 10 6 3.6287 -1.7421 5.8616 11 6 3.3806 -0.3845 5.8373 12 6 2.9222 0.2183 4.6737 13 8 2.6775 1.5508 4.6480 14 6 3.0087 2.2552 5.7487 15 1 3.3714 1.7439 6.6282 16 6 2.8835 3.6366 5.7518 17 7 2.4423 4.2592 4.6807 18 14 3.3431 4.6126 7.2767 19 1 3.8090 3.6836 8.3374 20 1 4.4291 5.5690 6.9437 21 1 2.1558 5.3613 7.7617 22 6 2.0399 -0.7212 -1.2493 23 6 2.7419 -2.0662 -1.0514 24 6 3.5550 -0.8281 -1.4344 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.8126 -2.5374 2.6835 29 1 3.6207 -3.5747 4.7579 30 1 3.9848 -2.2063 6.7693 31 1 3.5433 0.2094 6.7245 32 1 2.3551 5.2253 4.6827 33 1 1.4309 -0.5979 -2.1449 34 1 2.8400 -2.4374 -0.0313 35 1 2.5946 -2.8282 -1.8168 36 1 3.9426 -0.7754 -2.4516 37 1 4.1884 -0.3845 -0.6661 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764383885.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:56 Heat of formation + Delta-G solvation = -62.753964 kcal Electronic energy + Delta-G solvation = -21312.355990 eV Core-core repulsion = 18021.609249 eV Total energy + Delta-G solvation = -3290.746741 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.97921 -38.88212 -37.20183 -36.41015 -35.01602 -32.41852 -31.37873 -30.29619 -28.97494 -25.51773 -24.38936 -23.22798 -22.28373 -21.66299 -20.58303 -19.53530 -18.08055 -17.61929 -16.57362 -16.05248 -15.50920 -14.93864 -14.72864 -14.44838 -14.38268 -13.81173 -13.69446 -13.42658 -12.96609 -12.64911 -12.46952 -12.23088 -11.77533 -11.66620 -11.40881 -11.37904 -11.09371 -11.06373 -10.95769 -10.77915 -10.48204 -10.47703 -10.06077 -9.79719 -9.64584 -9.21727 -8.94614 -8.33410 -7.38940 -6.52091 -4.11884 1.60256 2.29569 3.08203 3.09140 3.14966 3.26611 3.47572 3.87917 3.88986 4.54678 4.67347 4.95824 5.00532 5.04797 5.12622 5.26845 5.37944 5.49783 5.54967 5.59725 5.68113 5.73015 5.85121 5.94267 6.06265 6.12106 6.13077 6.24273 6.32118 6.36089 6.56958 6.65204 6.89295 7.02192 7.13085 7.22578 7.31871 7.64762 7.86548 8.75836 8.88352 9.57568 10.61725 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.018309 B = 0.005547 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.928575 B = 5046.566570 C = 6158.971714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 H 0.087 0.913 4 O -0.359 6.359 5 C 0.497 3.503 6 O -0.477 6.477 7 C -0.216 4.216 8 C -0.016 4.016 9 C -0.235 4.235 10 C -0.044 4.044 11 C -0.239 4.239 12 C 0.191 3.809 13 O -0.125 6.125 14 C -0.403 4.403 15 H 0.097 0.903 16 C 0.044 3.956 17 N -0.832 5.832 18 Si 0.943 3.057 19 H -0.265 1.265 20 H -0.274 1.274 21 H -0.274 1.274 22 C -0.157 4.157 23 C -0.165 4.165 24 C -0.179 4.179 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.123 0.877 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.134 0.866 32 H 0.272 0.728 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.290 -10.459 -6.397 12.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.060 3.940 3 H 0.105 0.895 4 O -0.278 6.278 5 C 0.342 3.658 6 O -0.363 6.363 7 C -0.219 4.219 8 C -0.034 4.034 9 C -0.254 4.254 10 C -0.062 4.062 11 C -0.258 4.258 12 C 0.131 3.869 13 O -0.023 6.023 14 C -0.478 4.478 15 H 0.114 0.886 16 C -0.164 4.164 17 N -0.463 5.463 18 Si 0.767 3.233 19 H -0.189 1.189 20 H -0.199 1.199 21 H -0.200 1.200 22 C -0.175 4.175 23 C -0.202 4.202 24 C -0.216 4.216 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.141 0.859 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.152 0.848 32 H 0.082 0.918 33 H 0.135 0.865 34 H 0.125 0.875 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.044 -9.615 -6.694 11.716 hybrid contribution 0.178 0.573 0.731 0.945 sum 0.221 -9.042 -5.963 10.834 Atomic orbital electron populations 1.22119 0.94502 1.02529 1.02895 1.21927 0.93913 0.96642 0.81498 0.89535 1.86553 1.78510 1.42447 1.20334 1.21101 0.75959 0.85507 0.83249 1.90990 1.46927 1.15083 1.83286 1.18051 1.19459 0.93793 0.90556 1.20944 0.92778 0.92250 0.97433 1.20539 1.11555 0.99236 0.94048 1.20963 0.94731 0.93247 0.97307 1.21116 1.10348 0.95459 0.98919 1.19244 0.90496 0.85503 0.91635 1.84145 1.66447 1.12885 1.38860 1.21578 1.45683 0.89226 0.91337 0.88613 1.25420 0.96240 0.95843 0.98856 1.70131 1.39091 1.09690 1.27400 0.85626 0.78558 0.79498 0.79617 1.18880 1.19938 1.19951 1.22419 0.95459 1.01660 0.97935 1.22887 1.03378 0.90604 1.03340 1.22961 0.93400 1.02788 1.02402 0.91300 0.91853 0.91645 0.85869 0.87012 0.86982 0.84848 0.91783 0.86535 0.87516 0.89222 0.88916 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.53 37.16 0.35 -1.97 16 2 C 0.12 1.85 2.92 -26.73 -0.08 1.77 16 3 H 0.09 1.58 7.16 -51.93 -0.37 1.21 16 4 O -0.36 -6.64 7.48 -40.64 -0.30 -6.94 16 5 C 0.50 11.33 7.86 34.46 0.27 11.60 16 6 O -0.48 -12.89 14.43 -26.59 -0.38 -13.28 16 7 C -0.22 -4.83 5.89 -104.83 -0.62 -5.45 16 8 C -0.02 -0.29 9.61 -39.19 -0.38 -0.66 16 9 C -0.23 -3.92 10.02 -39.61 -0.40 -4.32 16 10 C -0.04 -0.77 10.03 -39.53 -0.40 -1.17 16 11 C -0.24 -5.10 9.16 -39.44 -0.36 -5.46 16 12 C 0.19 4.73 6.66 -38.58 -0.26 4.47 16 13 O -0.13 -3.66 7.84 -21.01 -0.16 -3.82 16 14 C -0.40 -11.24 9.49 30.90 0.29 -10.94 16 15 H 0.10 2.42 5.21 -52.48 -0.27 2.15 16 16 C 0.04 1.22 5.49 -17.51 -0.10 1.12 16 17 N -0.83 -24.74 13.67 55.48 0.76 -23.98 16 18 Si 0.94 20.22 29.55 -169.99 -5.02 15.20 16 19 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 22 C -0.16 -1.97 5.71 -90.62 -0.52 -2.49 16 23 C -0.17 -1.95 9.88 -26.73 -0.26 -2.21 16 24 C -0.18 -2.19 10.19 -26.73 -0.27 -2.46 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.12 1.92 7.61 -52.49 -0.40 1.52 16 29 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 30 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 32 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.12 1.21 8.11 -51.93 -0.42 0.79 16 34 H 0.11 1.40 7.04 -51.93 -0.37 1.03 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 320.78 15.07 4.83 4.83 Total: -1.00 -32.44 320.78 -7.64 -40.08 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -4.64 Total: 6.08 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -2.72 Total: -18.16 kcal Atomic # 7 Polarization: -24.74 SS G_CDS: 0.76 Total: -23.98 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.85 Total: -24.04 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.44 -7.64 -40.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764383885.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.676 kcal (2) G-P(sol) polarization free energy of solvation -32.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds