Wall clock time and date at job start Mon Mar 30 2020 02:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46718 * 2 1 4 4 O 1.45199 * 109.46907 * 120.00094 * 2 1 3 5 5 C 1.34755 * 116.99642 * 269.99650 * 4 2 1 6 6 O 1.21516 * 120.00613 * 0.02562 * 5 4 2 7 7 C 1.47406 * 119.99639 * 180.02562 * 5 4 2 8 8 C 1.39723 * 120.20222 * 0.27620 * 7 5 4 9 9 C 1.37804 * 119.91132 * 180.27304 * 8 7 5 10 10 C 1.38590 * 120.33478 * 359.70564 * 9 8 7 11 11 C 1.38027 * 120.40963 * 0.02562 * 10 9 8 12 12 C 1.38837 * 120.07780 * 0.02562 * 11 10 9 13 13 O 1.35504 * 120.16263 * 179.97438 * 12 11 10 14 14 C 1.34813 * 117.00336 * 5.59565 * 13 12 11 15 15 H 1.08003 * 119.99735 * 354.93370 * 14 13 12 16 16 C 1.38701 * 120.00240 * 174.93697 * 14 13 12 17 17 N 1.31521 * 119.99788 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00110 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47373 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47338 * 120.00001 * 18 16 14 21 21 H 1.48506 * 109.47195 * 239.99990 * 18 16 14 22 22 C 1.52997 * 109.46640 * 240.00161 * 2 1 3 23 23 C 1.53002 * 117.49698 * 248.61680 * 22 2 1 24 24 C 1.52998 * 60.00270 * 252.51384 * 23 22 2 25 25 H 1.08998 * 109.47316 * 59.99687 * 1 2 3 26 26 H 1.09002 * 109.47141 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46981 * 300.00113 * 1 2 3 28 28 H 1.07998 * 120.04994 * 0.02562 * 8 7 5 29 29 H 1.08006 * 119.83366 * 179.72174 * 9 8 7 30 30 H 1.07992 * 119.79673 * 180.02562 * 10 9 8 31 31 H 1.07997 * 119.95774 * 180.02562 * 11 10 9 32 32 H 0.97001 * 119.99771 * 180.02562 * 17 16 14 33 33 H 1.09004 * 115.55476 * 34.32857 * 22 2 1 34 34 H 1.08998 * 117.49743 * 0.02562 * 23 22 2 35 35 H 1.08999 * 117.49698 * 145.02246 * 23 22 2 36 36 H 1.08991 * 117.49929 * 252.50960 * 24 23 22 37 37 H 1.09005 * 117.49579 * 107.48808 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2179 0.0670 2.2854 6 8 1.9970 1.2615 2.2547 7 6 2.7091 -0.5601 3.5257 8 6 2.9700 -1.9322 3.5640 9 6 3.4237 -2.5131 4.7284 10 6 3.6287 -1.7421 5.8616 11 6 3.3806 -0.3845 5.8373 12 6 2.9222 0.2183 4.6737 13 8 2.6775 1.5508 4.6480 14 6 3.0087 2.2552 5.7487 15 1 3.3714 1.7439 6.6282 16 6 2.8835 3.6366 5.7518 17 7 2.4423 4.2592 4.6807 18 14 3.3431 4.6126 7.2767 19 1 3.8090 3.6836 8.3374 20 1 4.4291 5.5690 6.9437 21 1 2.1558 5.3613 7.7617 22 6 2.0399 -0.7212 -1.2493 23 6 2.7419 -2.0662 -1.0514 24 6 3.5550 -0.8281 -1.4344 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.8126 -2.5374 2.6835 29 1 3.6207 -3.5747 4.7579 30 1 3.9848 -2.2063 6.7693 31 1 3.5433 0.2094 6.7245 32 1 2.3551 5.2253 4.6827 33 1 1.4309 -0.5979 -2.1449 34 1 2.8400 -2.4374 -0.0313 35 1 2.5946 -2.8282 -1.8168 36 1 3.9426 -0.7754 -2.4516 37 1 4.1884 -0.3845 -0.6661 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764383885.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:55 Heat of formation + Delta-G solvation = -81.567913 kcal Electronic energy + Delta-G solvation = -21313.171824 eV Core-core repulsion = 18021.609249 eV Total energy + Delta-G solvation = -3291.562575 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.65821 -40.54866 -38.59440 -38.11121 -36.55934 -34.38547 -32.79579 -31.77337 -30.64717 -27.48843 -25.84881 -24.61601 -23.38339 -23.21289 -22.06086 -20.92494 -19.92146 -19.33315 -18.31255 -17.53860 -17.01242 -16.39884 -16.33458 -16.07452 -15.82789 -15.50492 -15.35558 -14.91641 -14.56476 -14.27428 -13.84849 -13.58578 -13.55289 -13.05637 -12.92743 -12.73167 -12.58769 -12.42693 -12.32538 -12.18046 -12.10154 -11.84712 -11.59612 -11.16040 -11.07157 -10.88440 -10.81785 -9.93630 -9.13185 -8.49957 -6.21246 -0.04886 0.67546 1.32214 1.42685 1.52305 1.72970 1.75289 2.12986 2.80819 2.87031 3.13703 3.36166 3.57815 3.86104 3.89205 4.00223 4.07484 4.18705 4.23376 4.31181 4.46349 4.49623 4.53330 4.75680 4.79956 4.82598 4.95870 4.98607 5.04032 5.09896 5.13979 5.22428 5.36429 5.46234 5.47361 5.62039 5.65178 5.92042 6.11293 6.88990 7.01568 7.70506 8.70581 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.018309 B = 0.005547 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.928575 B = 5046.566570 C = 6158.971714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.104 3.896 3 H 0.052 0.948 4 O -0.344 6.344 5 C 0.497 3.503 6 O -0.532 6.532 7 C -0.238 4.238 8 C -0.012 4.012 9 C -0.203 4.203 10 C -0.027 4.027 11 C -0.257 4.257 12 C 0.156 3.844 13 O -0.188 6.188 14 C -0.427 4.427 15 H 0.112 0.888 16 C -0.021 4.021 17 N -0.905 5.905 18 Si 1.025 2.975 19 H -0.243 1.243 20 H -0.269 1.269 21 H -0.269 1.269 22 C -0.159 4.159 23 C -0.152 4.152 24 C -0.185 4.185 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.029 0.971 28 H 0.155 0.845 29 H 0.166 0.834 30 H 0.161 0.839 31 H 0.131 0.869 32 H 0.272 0.728 33 H 0.149 0.851 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.115 -14.769 -6.247 16.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.049 3.951 3 H 0.070 0.930 4 O -0.262 6.262 5 C 0.344 3.656 6 O -0.422 6.422 7 C -0.241 4.241 8 C -0.030 4.030 9 C -0.222 4.222 10 C -0.045 4.045 11 C -0.276 4.276 12 C 0.101 3.899 13 O -0.091 6.091 14 C -0.503 4.503 15 H 0.129 0.871 16 C -0.221 4.221 17 N -0.540 5.540 18 Si 0.843 3.157 19 H -0.166 1.166 20 H -0.194 1.194 21 H -0.194 1.194 22 C -0.176 4.176 23 C -0.189 4.189 24 C -0.222 4.222 25 H 0.116 0.884 26 H 0.102 0.898 27 H 0.048 0.952 28 H 0.173 0.827 29 H 0.184 0.816 30 H 0.179 0.821 31 H 0.148 0.852 32 H 0.081 0.919 33 H 0.167 0.833 34 H 0.111 0.889 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.883 -14.030 -6.549 15.508 hybrid contribution -0.041 1.444 0.547 1.545 sum 0.842 -12.586 -6.002 13.969 Atomic orbital electron populations 1.22102 0.92970 1.03721 1.02627 1.22265 0.95314 0.95568 0.81960 0.93023 1.86524 1.77987 1.41576 1.20084 1.21422 0.74772 0.84968 0.84396 1.90975 1.49356 1.17591 1.84324 1.18523 1.19943 0.95741 0.89861 1.21372 0.91695 0.90273 0.99653 1.21226 1.07051 1.01621 0.92268 1.21533 0.92059 0.91359 0.99578 1.21298 1.11105 0.97504 0.97657 1.20000 0.91208 0.84902 0.93830 1.84150 1.69983 1.14962 1.39975 1.22135 1.46195 0.90020 0.91904 0.87116 1.26810 0.95880 0.96791 1.02587 1.70317 1.43088 1.09892 1.30713 0.84467 0.78311 0.77711 0.75242 1.16596 1.19407 1.19356 1.22466 0.96082 1.02274 0.96808 1.22979 1.01707 0.90625 1.03597 1.23007 0.92842 1.03336 1.03055 0.88389 0.89755 0.95151 0.82700 0.81613 0.82146 0.85172 0.91868 0.83320 0.88906 0.85971 0.86258 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.50 9.53 71.98 0.69 -3.81 16 2 C 0.10 3.41 2.92 30.59 0.09 3.50 16 3 H 0.05 2.06 7.16 -2.39 -0.02 2.04 16 4 O -0.34 -12.97 7.48 -56.66 -0.42 -13.39 16 5 C 0.50 24.04 7.86 70.24 0.55 24.59 16 6 O -0.53 -31.60 14.43 26.78 0.39 -31.22 16 7 C -0.24 -10.88 5.89 -20.00 -0.12 -11.00 16 8 C -0.01 -0.40 9.61 22.53 0.22 -0.18 16 9 C -0.20 -5.64 10.02 22.25 0.22 -5.42 16 10 C -0.03 -0.84 10.03 22.30 0.22 -0.62 16 11 C -0.26 -10.80 9.16 22.36 0.20 -10.60 16 12 C 0.16 8.07 6.66 22.92 0.15 8.22 16 13 O -0.19 -11.91 7.84 1.03 0.01 -11.91 16 14 C -0.43 -25.45 9.49 67.93 0.64 -24.81 16 15 H 0.11 5.87 5.21 -2.91 -0.02 5.85 16 16 C -0.02 -1.24 5.49 84.85 0.47 -0.77 16 17 N -0.90 -58.50 13.67 21.62 0.30 -58.21 16 18 Si 1.02 43.48 29.55 68.60 2.03 45.50 16 19 H -0.24 -9.25 7.11 99.48 0.71 -8.54 16 20 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 21 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 22 C -0.16 -3.70 5.71 -10.79 -0.06 -3.76 16 23 C -0.15 -3.13 9.88 30.59 0.30 -2.83 16 24 C -0.19 -4.28 10.19 30.60 0.31 -3.97 16 25 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.16 4.17 7.61 -2.91 -0.02 4.15 16 29 H 0.17 3.04 8.06 -2.91 -0.02 3.01 16 30 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 31 H 0.13 5.46 5.64 -2.91 -0.02 5.44 16 32 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 33 H 0.15 2.56 8.11 -2.38 -0.02 2.54 16 34 H 0.09 2.18 7.04 -2.39 -0.02 2.16 16 35 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 Total: -1.00 -82.13 320.78 7.27 -74.86 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 1.08 Total: 25.80 kcal Atomic # 6 Polarization: -35.34 SS G_CDS: 3.89 Total: -31.44 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: 0.30 Total: -58.21 kcal Atomic # 8 Polarization: -56.49 SS G_CDS: -0.03 Total: -56.52 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -82.13 7.27 -74.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764383885.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.706 kcal (2) G-P(sol) polarization free energy of solvation -82.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds