Wall clock time and date at job start Mon Mar 30 2020 02:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21256 * 119.99900 * 2 1 4 4 C 1.47186 * 120.00198 * 179.97438 * 2 1 3 5 5 C 1.39976 * 120.09762 * 359.97438 * 4 2 1 6 6 C 1.38000 * 120.12439 * 180.02562 * 5 4 2 7 7 C 1.38127 * 120.33551 * 359.97438 * 6 5 4 8 8 C 1.39759 * 120.19188 * 0.04017 * 7 6 5 9 9 C 1.47745 * 120.06161 * 179.97438 * 8 7 6 10 10 O 1.21472 * 119.99804 * 179.97438 * 9 8 7 11 11 O 1.34707 * 120.00059 * 359.97438 * 9 8 7 12 12 C 1.45206 * 116.99689 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.46703 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47095 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47226 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00466 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00136 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99652 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00374 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46721 * 59.99926 * 19 17 15 21 21 H 1.48492 * 109.47231 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47148 * 300.00403 * 19 17 15 23 23 C 1.39321 * 119.87288 * 359.96172 * 8 7 6 24 24 H 1.08999 * 109.46679 * 240.00343 * 1 2 3 25 25 H 1.08995 * 109.47084 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46822 * 120.00300 * 1 2 3 27 27 H 1.07995 * 119.93865 * 0.04448 * 5 4 2 28 28 H 1.07999 * 119.83035 * 180.02562 * 6 5 4 29 29 H 1.07998 * 119.90134 * 180.02562 * 7 6 5 30 30 H 1.08994 * 109.47329 * 299.99928 * 12 11 9 31 31 H 1.08994 * 109.47057 * 60.00526 * 12 11 9 32 32 H 1.09007 * 109.47196 * 299.99781 * 13 12 11 33 33 H 1.08999 * 109.47598 * 60.00114 * 13 12 11 34 34 H 1.08998 * 109.46945 * 300.00155 * 14 13 12 35 35 H 1.09002 * 109.47433 * 59.99577 * 14 13 12 36 36 H 0.97003 * 119.99976 * 180.02562 * 18 17 15 37 37 H 1.07997 * 120.16388 * 180.29648 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2430 -1.2746 0.0006 5 6 1.5452 -2.4881 0.0017 6 6 2.2347 -3.6835 0.0027 7 6 3.6159 -3.6922 0.0022 8 6 4.3264 -2.4886 0.0014 9 6 5.8038 -2.5013 0.0014 10 8 6.4201 -1.4545 0.0003 11 8 6.4673 -3.6736 0.0027 12 6 7.9180 -3.6099 0.0032 13 6 8.4906 -5.0287 0.0040 14 6 10.0191 -4.9617 0.0052 15 6 10.5832 -6.3592 0.0066 16 1 9.9181 -7.2100 0.0071 17 6 11.9485 -6.5515 0.0073 18 7 12.7585 -5.5154 0.0073 19 14 12.6478 -8.2837 0.0098 20 1 12.1843 -9.0062 -1.2019 21 1 14.1313 -8.2186 0.0109 22 1 12.1835 -9.0032 1.2231 23 6 3.6387 -1.2769 0.0004 24 1 -0.3632 -0.5138 0.8900 25 1 -0.3633 1.0276 -0.0005 26 1 -0.3633 -0.5139 -0.8900 27 1 0.4652 -2.4888 0.0013 28 1 1.6915 -4.6170 0.0031 29 1 4.1484 -4.6318 0.0026 30 1 8.2588 -3.0815 -0.8870 31 1 8.2580 -3.0800 0.8929 32 1 8.1498 -5.5576 0.8942 33 1 8.1505 -5.5584 -0.8858 34 1 10.3603 -4.4327 -0.8846 35 1 10.3590 -4.4322 0.8953 36 1 13.7191 -5.6507 0.0074 37 1 4.1830 -0.3441 -0.0051 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767440583.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:52 Heat of formation + Delta-G solvation = -116.658227 kcal Electronic energy + Delta-G solvation = -19616.743507 eV Core-core repulsion = 16323.659302 eV Total energy + Delta-G solvation = -3293.084206 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.73251 -39.87691 -38.33064 -36.45487 -34.02672 -32.68944 -31.69583 -31.49695 -29.92924 -27.18991 -24.77961 -24.09458 -22.87191 -21.43916 -20.42549 -19.85966 -17.96236 -17.21929 -16.42535 -16.33754 -16.13073 -15.76657 -15.70731 -15.40180 -14.53963 -14.44429 -14.20899 -14.15627 -13.36911 -13.04044 -12.78517 -12.55552 -12.36877 -12.22271 -12.12010 -11.94762 -11.66300 -10.97014 -10.73887 -10.66608 -10.50597 -10.42138 -10.17753 -9.75705 -9.53288 -9.49615 -9.46260 -9.19481 -8.39738 -6.04499 -4.07856 0.11675 0.57650 1.85728 2.55531 2.71066 3.31468 3.36008 3.38247 3.44924 3.61600 4.31964 4.39450 4.43589 4.57411 4.69980 4.77173 4.81783 4.92250 5.04438 5.26611 5.31280 5.44148 5.52277 5.55054 5.58890 5.78632 5.84347 5.91059 5.99527 6.30532 6.42721 6.50916 6.78511 6.95038 7.10480 7.58425 7.69449 7.82792 7.93420 8.34144 8.98102 9.56366 11.06884 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.047393 B = 0.002567 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.659943 B =10905.405512 C =11465.015094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.395 3.605 3 O -0.452 6.452 4 C -0.187 4.187 5 C -0.044 4.044 6 C -0.144 4.144 7 C -0.030 4.030 8 C -0.130 4.130 9 C 0.502 3.498 10 O -0.504 6.504 11 O -0.353 6.353 12 C 0.069 3.931 13 C -0.108 4.108 14 C 0.024 3.976 15 C -0.523 4.523 16 H 0.057 0.943 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.896 3.104 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.001 4.001 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.138 0.862 28 H 0.140 0.860 29 H 0.148 0.852 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.020 0.980 35 H 0.020 0.980 36 H 0.262 0.738 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.441 5.490 -0.019 27.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.272 3.728 3 O -0.327 6.327 4 C -0.188 4.188 5 C -0.062 4.062 6 C -0.162 4.162 7 C -0.048 4.048 8 C -0.131 4.131 9 C 0.346 3.654 10 O -0.393 6.393 11 O -0.269 6.269 12 C -0.004 4.004 13 C -0.146 4.146 14 C -0.013 4.013 15 C -0.561 4.561 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.019 4.019 24 H 0.113 0.887 25 H 0.105 0.895 26 H 0.113 0.887 27 H 0.156 0.844 28 H 0.158 0.842 29 H 0.166 0.834 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.072 0.928 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -26.691 6.391 -0.018 27.445 hybrid contribution 0.640 -0.960 0.001 1.154 sum -26.050 5.431 -0.017 26.611 Atomic orbital electron populations 1.22246 0.93322 1.05417 1.04604 1.22483 0.91760 0.87341 0.71171 1.90585 1.72142 1.34156 1.35856 1.20454 0.93883 0.95369 1.09125 1.21696 1.00472 0.91354 0.92683 1.21191 0.93978 0.98610 1.02427 1.21877 0.94441 0.98204 0.90263 1.19221 0.90283 0.94557 1.09005 1.21012 0.88443 0.82545 0.73422 1.90852 1.69614 1.33397 1.45453 1.86520 1.24623 1.32563 1.83222 1.23572 0.72928 1.01507 1.02404 1.21774 0.99363 0.91480 1.01984 1.19051 0.86768 0.97763 0.97739 1.21123 0.91550 0.92177 1.51232 0.92476 1.25038 0.97214 0.97059 0.95183 1.69956 1.03367 1.29635 1.50354 0.86594 0.77811 0.84575 0.78650 1.20177 1.21261 1.20182 1.21576 0.93074 0.98170 0.89099 0.88683 0.89511 0.88687 0.84376 0.84240 0.83435 0.91305 0.91299 0.92090 0.92086 0.96198 0.96200 0.92805 0.83378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.84 8.93 36.01 0.32 -0.52 16 2 C 0.39 3.48 7.23 -30.68 -0.22 3.26 16 3 O -0.45 -5.86 17.07 5.58 0.10 -5.77 16 4 C -0.19 -1.68 5.86 -105.11 -0.62 -2.30 16 5 C -0.04 -0.27 9.47 -39.02 -0.37 -0.63 16 6 C -0.14 -0.95 10.01 -39.71 -0.40 -1.34 16 7 C -0.03 -0.28 9.61 -39.05 -0.38 -0.65 16 8 C -0.13 -1.61 5.87 -105.04 -0.62 -2.22 16 9 C 0.50 8.03 7.90 34.62 0.27 8.30 16 10 O -0.50 -9.50 16.13 -19.24 -0.31 -9.81 16 11 O -0.35 -5.84 9.46 -40.51 -0.38 -6.22 16 12 C 0.07 1.27 5.48 37.16 0.20 1.47 16 13 C -0.11 -2.22 5.53 -26.73 -0.15 -2.37 16 14 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 19 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 C 0.00 -0.01 9.14 -38.68 -0.35 -0.36 16 24 H 0.09 0.22 8.08 -51.93 -0.42 -0.20 16 25 H 0.09 0.39 8.12 -51.93 -0.42 -0.03 16 26 H 0.09 0.22 8.08 -51.93 -0.42 -0.20 16 27 H 0.14 0.33 7.03 -52.49 -0.37 -0.03 16 28 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 29 H 0.15 1.29 7.60 -52.49 -0.40 0.89 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.15 1.99 7.23 -52.49 -0.38 1.61 16 LS Contribution 330.46 15.07 4.98 4.98 Total: -1.00 -33.85 330.46 -7.66 -41.51 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: -4.91 Total: -4.72 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -2.85 Total: -10.34 kcal Atomic # 7 Polarization: -26.82 SS G_CDS: 0.74 Total: -26.09 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.60 Total: -21.80 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.85 -7.66 -41.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767440583.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.145 kcal (2) G-P(sol) polarization free energy of solvation -33.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds