Wall clock time and date at job start Mon Mar 30 2020 02:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21256 * 119.99900 * 2 1 4 4 C 1.47186 * 120.00198 * 179.97438 * 2 1 3 5 5 C 1.39976 * 120.09762 * 359.97438 * 4 2 1 6 6 C 1.38000 * 120.12439 * 180.02562 * 5 4 2 7 7 C 1.38127 * 120.33551 * 359.97438 * 6 5 4 8 8 C 1.39759 * 120.19188 * 0.04017 * 7 6 5 9 9 C 1.47745 * 120.06161 * 179.97438 * 8 7 6 10 10 O 1.21472 * 119.99804 * 179.97438 * 9 8 7 11 11 O 1.34707 * 120.00059 * 359.97438 * 9 8 7 12 12 C 1.45206 * 116.99689 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.46703 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47095 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47226 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00466 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00136 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99652 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00374 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46721 * 59.99926 * 19 17 15 21 21 H 1.48492 * 109.47231 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47148 * 300.00403 * 19 17 15 23 23 C 1.39321 * 119.87288 * 359.96172 * 8 7 6 24 24 H 1.08999 * 109.46679 * 240.00343 * 1 2 3 25 25 H 1.08995 * 109.47084 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46822 * 120.00300 * 1 2 3 27 27 H 1.07995 * 119.93865 * 0.04448 * 5 4 2 28 28 H 1.07999 * 119.83035 * 180.02562 * 6 5 4 29 29 H 1.07998 * 119.90134 * 180.02562 * 7 6 5 30 30 H 1.08994 * 109.47329 * 299.99928 * 12 11 9 31 31 H 1.08994 * 109.47057 * 60.00526 * 12 11 9 32 32 H 1.09007 * 109.47196 * 299.99781 * 13 12 11 33 33 H 1.08999 * 109.47598 * 60.00114 * 13 12 11 34 34 H 1.08998 * 109.46945 * 300.00155 * 14 13 12 35 35 H 1.09002 * 109.47433 * 59.99577 * 14 13 12 36 36 H 0.97003 * 119.99976 * 180.02562 * 18 17 15 37 37 H 1.07997 * 120.16388 * 180.29648 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2430 -1.2746 0.0006 5 6 1.5452 -2.4881 0.0017 6 6 2.2347 -3.6835 0.0027 7 6 3.6159 -3.6922 0.0022 8 6 4.3264 -2.4886 0.0014 9 6 5.8038 -2.5013 0.0014 10 8 6.4201 -1.4545 0.0003 11 8 6.4673 -3.6736 0.0027 12 6 7.9180 -3.6099 0.0032 13 6 8.4906 -5.0287 0.0040 14 6 10.0191 -4.9617 0.0052 15 6 10.5832 -6.3592 0.0066 16 1 9.9181 -7.2100 0.0071 17 6 11.9485 -6.5515 0.0073 18 7 12.7585 -5.5154 0.0073 19 14 12.6478 -8.2837 0.0098 20 1 12.1843 -9.0062 -1.2019 21 1 14.1313 -8.2186 0.0109 22 1 12.1835 -9.0032 1.2231 23 6 3.6387 -1.2769 0.0004 24 1 -0.3632 -0.5138 0.8900 25 1 -0.3633 1.0276 -0.0005 26 1 -0.3633 -0.5139 -0.8900 27 1 0.4652 -2.4888 0.0013 28 1 1.6915 -4.6170 0.0031 29 1 4.1484 -4.6318 0.0026 30 1 8.2588 -3.0815 -0.8870 31 1 8.2580 -3.0800 0.8929 32 1 8.1498 -5.5576 0.8942 33 1 8.1505 -5.5584 -0.8858 34 1 10.3603 -4.4327 -0.8846 35 1 10.3590 -4.4322 0.8953 36 1 13.7191 -5.6507 0.0074 37 1 4.1830 -0.3441 -0.0051 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767440583.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:52 Heat of formation + Delta-G solvation = -136.540722 kcal Electronic energy + Delta-G solvation = -19617.605677 eV Core-core repulsion = 16323.659302 eV Total energy + Delta-G solvation = -3293.946375 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.80782 -40.82497 -39.14579 -37.86915 -35.96771 -33.83988 -33.24427 -32.23902 -30.48899 -29.02401 -26.01435 -25.03826 -24.28454 -22.34470 -22.18691 -20.85126 -18.90188 -18.69143 -18.10231 -17.76518 -17.01414 -16.64092 -16.55799 -16.45494 -16.08282 -15.72858 -15.22617 -14.88867 -14.76471 -14.14606 -14.07609 -13.81679 -13.54006 -13.20051 -12.98358 -12.97803 -12.80830 -12.55115 -12.54396 -12.35307 -12.13127 -11.90533 -11.49646 -11.47031 -11.27874 -10.87422 -10.57653 -10.23947 -10.17085 -8.22282 -6.34322 -0.59678 -0.25009 1.12669 1.40439 1.45015 1.45580 1.53400 1.56057 2.41089 2.68745 3.00569 3.11549 3.41627 3.74732 3.94816 3.94935 3.97472 4.02031 4.13345 4.24878 4.35036 4.47072 4.72418 4.73479 4.76521 4.80543 4.81687 5.04461 5.08581 5.16327 5.18435 5.27896 5.36165 5.47520 5.61351 5.69062 5.78612 6.17198 6.48289 6.52535 6.81558 7.35306 8.89848 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.047393 B = 0.002567 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.659943 B =10905.405512 C =11465.015094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.393 3.607 3 O -0.511 6.511 4 C -0.197 4.197 5 C -0.013 4.013 6 C -0.130 4.130 7 C -0.030 4.030 8 C -0.156 4.156 9 C 0.499 3.501 10 O -0.546 6.546 11 O -0.345 6.345 12 C 0.077 3.923 13 C -0.091 4.091 14 C 0.025 3.975 15 C -0.543 4.543 16 H 0.068 0.932 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.971 3.029 20 H -0.264 1.264 21 H -0.285 1.285 22 H -0.264 1.264 23 C -0.024 4.024 24 H 0.126 0.874 25 H 0.081 0.919 26 H 0.126 0.874 27 H 0.192 0.808 28 H 0.184 0.816 29 H 0.154 0.846 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.071 0.929 34 H -0.005 1.005 35 H -0.005 1.005 36 H 0.264 0.736 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.428 2.602 -0.017 31.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.275 3.725 3 O -0.390 6.390 4 C -0.198 4.198 5 C -0.031 4.031 6 C -0.147 4.147 7 C -0.048 4.048 8 C -0.157 4.157 9 C 0.346 3.654 10 O -0.438 6.438 11 O -0.261 6.261 12 C 0.004 3.996 13 C -0.128 4.128 14 C -0.013 4.013 15 C -0.581 4.581 16 H 0.086 0.914 17 C -0.201 4.201 18 N -0.575 5.575 19 Si 0.795 3.205 20 H -0.189 1.189 21 H -0.211 1.211 22 H -0.189 1.189 23 C -0.042 4.042 24 H 0.144 0.856 25 H 0.100 0.900 26 H 0.144 0.856 27 H 0.209 0.791 28 H 0.201 0.799 29 H 0.172 0.828 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.014 0.986 35 H 0.014 0.986 36 H 0.073 0.927 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -30.720 3.479 -0.017 30.916 hybrid contribution 1.756 -0.031 0.000 1.757 sum -28.963 3.447 -0.016 29.168 Atomic orbital electron populations 1.22312 0.88857 1.06219 1.07347 1.23306 0.94036 0.86254 0.68940 1.90579 1.73657 1.35924 1.38812 1.20703 0.92516 0.97286 1.09298 1.22272 1.02858 0.89387 0.88553 1.21697 0.92501 1.00612 0.99919 1.22078 0.96096 0.96861 0.89784 1.19059 0.87699 0.96216 1.12700 1.21816 0.90065 0.81549 0.71946 1.90825 1.70728 1.34534 1.47676 1.86495 1.23138 1.33072 1.83441 1.23215 0.74459 1.00147 1.01823 1.21455 0.95804 0.92686 1.02898 1.18943 0.90390 0.96542 0.95376 1.21591 0.92242 0.93283 1.50948 0.91378 1.26059 0.97727 1.01767 0.94587 1.70105 1.03718 1.32291 1.51402 0.85405 0.76829 0.78881 0.79369 1.18902 1.21089 1.18918 1.21457 0.94853 0.96765 0.91149 0.85590 0.90001 0.85594 0.79079 0.79889 0.82827 0.92016 0.92011 0.91067 0.91058 0.98638 0.98642 0.92696 0.86816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.86 8.93 71.24 0.64 -0.22 16 2 C 0.39 6.48 7.23 28.04 0.20 6.68 16 3 O -0.51 -14.00 17.07 -2.96 -0.05 -14.05 16 4 C -0.20 -3.22 5.86 -20.18 -0.12 -3.34 16 5 C -0.01 -0.09 9.47 22.63 0.21 0.12 16 6 C -0.13 -1.04 10.01 22.19 0.22 -0.82 16 7 C -0.03 -0.50 9.61 22.61 0.22 -0.28 16 8 C -0.16 -3.95 5.87 -20.14 -0.12 -4.07 16 9 C 0.50 16.95 7.90 70.34 0.56 17.51 16 10 O -0.55 -22.44 16.13 19.93 0.32 -22.12 16 11 O -0.35 -11.72 9.46 -56.17 -0.53 -12.25 16 12 C 0.08 2.97 5.48 71.98 0.39 3.36 16 13 C -0.09 -3.76 5.53 30.59 0.17 -3.59 16 14 C 0.02 1.31 4.97 29.85 0.15 1.46 16 15 C -0.54 -30.67 9.11 25.60 0.23 -30.43 16 16 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 17 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 18 N -0.94 -57.42 13.29 21.45 0.28 -57.14 16 19 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 20 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 21 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 23 C -0.02 -0.59 9.14 22.85 0.21 -0.38 16 24 H 0.13 -0.15 8.08 -2.39 -0.02 -0.17 16 25 H 0.08 0.52 8.12 -2.39 -0.02 0.50 16 26 H 0.13 -0.15 8.08 -2.39 -0.02 -0.17 16 27 H 0.19 -0.63 7.03 -2.91 -0.02 -0.65 16 28 H 0.18 0.02 8.06 -2.91 -0.02 0.00 16 29 H 0.15 2.32 7.60 -2.91 -0.02 2.30 16 30 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.07 2.80 8.14 -2.38 -0.02 2.78 16 33 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 35 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 36 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.11 3.55 7.23 -2.91 -0.02 3.53 16 Total: -1.00 -80.04 330.46 6.54 -73.50 By element: Atomic # 1 Polarization: -1.18 SS G_CDS: 1.07 Total: -0.12 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: 3.43 Total: -13.76 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.28 Total: -57.14 kcal Atomic # 8 Polarization: -48.16 SS G_CDS: -0.26 Total: -48.42 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -80.04 6.54 -73.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767440583.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.044 kcal (2) G-P(sol) polarization free energy of solvation -80.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds