Wall clock time and date at job start Mon Mar 30 2020 02:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50702 * 119.99583 * 2 1 4 4 O 1.42902 * 109.46832 * 135.00599 * 3 2 1 5 5 C 1.42905 * 114.00016 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.46897 * 179.97438 * 5 4 3 7 7 O 1.20826 * 120.00427 * 0.02562 * 6 5 4 8 8 O 1.34236 * 119.99623 * 179.97438 * 6 5 4 9 9 C 1.45202 * 116.99861 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47010 * 180.02562 * 9 8 6 11 11 C 1.38634 * 119.74914 * 269.72756 * 10 9 8 12 12 C 1.37619 * 120.24942 * 179.72155 * 11 10 9 13 13 C 1.40717 * 119.73953 * 0.57349 * 12 11 10 14 14 C 1.41400 * 120.23665 * 179.68462 * 13 12 11 15 15 H 1.08007 * 119.99684 * 155.31480 * 14 13 12 16 16 C 1.39939 * 120.00333 * 335.30310 * 14 13 12 17 17 N 1.30826 * 120.00025 * 342.23859 * 16 14 13 18 18 Si 1.86800 * 120.00117 * 162.23840 * 16 14 13 19 19 H 1.48494 * 109.47119 * 94.66408 * 18 16 14 20 20 H 1.48501 * 109.47377 * 214.66748 * 18 16 14 21 21 H 1.48501 * 109.47174 * 334.66670 * 18 16 14 22 22 C 1.40711 * 119.51509 * 359.69926 * 13 12 11 23 23 C 1.37617 * 119.74404 * 0.02562 * 22 13 12 24 24 H 1.07996 * 119.99814 * 179.97438 * 1 2 3 25 25 H 1.07998 * 120.00084 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.00084 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47300 * 15.00757 * 3 2 1 28 28 H 1.09004 * 109.47202 * 255.00298 * 3 2 1 29 29 H 1.09000 * 109.46900 * 59.99557 * 5 4 3 30 30 H 1.09003 * 109.47026 * 299.99890 * 5 4 3 31 31 H 1.08994 * 109.46999 * 300.00667 * 9 8 6 32 32 H 1.08996 * 109.46818 * 60.00402 * 9 8 6 33 33 H 1.08008 * 119.87481 * 359.97438 * 11 10 9 34 34 H 1.07995 * 120.12746 * 180.27730 * 12 11 10 35 35 H 0.97003 * 119.99697 * 179.97438 * 17 16 14 36 36 H 1.07997 * 120.12552 * 179.97438 * 22 13 12 37 37 H 1.07995 * 119.87428 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1268 1.2413 0.9526 5 6 3.9085 2.4350 1.0320 6 6 4.9940 2.2568 2.0620 7 8 5.0889 1.2145 2.6657 8 8 5.8562 3.2559 2.3079 9 6 6.8764 3.0138 3.3125 10 6 7.7445 4.2377 3.4518 11 6 8.8809 4.3679 2.6684 12 6 9.6779 5.4839 2.7830 13 6 9.3421 6.4894 3.7085 14 6 10.1573 7.6373 3.8397 15 1 9.7368 8.5579 4.2170 16 6 11.5087 7.5806 3.4811 17 7 12.1054 6.4226 3.3603 18 14 12.4608 9.1583 3.1747 19 1 13.1660 9.5603 4.4181 20 1 13.4532 8.9355 2.0927 21 1 11.5199 10.2335 2.7697 22 6 8.1895 6.3439 4.5024 23 6 7.4041 5.2221 4.3667 24 1 -0.5399 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3855 2.1161 0.2661 28 1 2.4754 1.4869 -0.9927 29 1 3.2689 3.2696 1.3192 30 1 4.3587 2.6397 0.0607 31 1 6.4004 2.7956 4.2684 32 1 7.4899 2.1652 3.0100 33 1 9.1394 3.5924 1.9624 34 1 10.5602 5.5853 2.1686 35 1 13.0421 6.3834 3.1113 36 1 7.9228 7.1093 5.2161 37 1 6.5193 5.1081 4.9753 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776114093.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:28 Heat of formation + Delta-G solvation = -95.825132 kcal Electronic energy + Delta-G solvation = -19633.698913 eV Core-core repulsion = 16341.518099 eV Total energy + Delta-G solvation = -3292.180815 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.16788 -38.29815 -37.60606 -35.98408 -34.15514 -33.88618 -30.92812 -29.40913 -29.04108 -27.07206 -25.81091 -23.77800 -21.14580 -21.05319 -20.24749 -20.05679 -17.69117 -17.40961 -16.82776 -16.73201 -16.30092 -15.66719 -15.41607 -14.94130 -14.34550 -13.96756 -13.78127 -13.48695 -12.92975 -12.74102 -12.59448 -12.19560 -12.11945 -12.03918 -11.56505 -11.32863 -11.26203 -11.13265 -10.64728 -10.64497 -10.31183 -10.16696 -10.15179 -9.71674 -9.65945 -9.48804 -9.23017 -7.58122 -7.47572 -6.88889 -4.48063 1.75654 2.31481 2.39979 2.81834 2.98936 3.01509 3.05592 3.16494 3.84203 3.91679 4.48879 4.66684 4.76193 4.88313 4.95713 5.06092 5.08857 5.17149 5.51343 5.59843 5.66476 5.69007 6.05890 6.22076 6.23847 6.27866 6.29972 6.75535 6.80983 6.86196 6.95894 7.16343 7.24546 7.49930 7.72007 7.94057 7.98931 8.05616 8.17407 8.52006 8.76755 8.84859 10.05251 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.046471 B = 0.002572 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.378425 B =10885.541354 C =10978.615200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.149 4.149 3 C 0.087 3.913 4 O -0.365 6.365 5 C 0.069 3.931 6 C 0.455 3.545 7 O -0.500 6.500 8 O -0.350 6.350 9 C 0.138 3.862 10 C -0.236 4.236 11 C -0.075 4.075 12 C -0.171 4.171 13 C 0.119 3.881 14 C -0.456 4.456 15 H 0.080 0.920 16 C 0.075 3.925 17 N -0.786 5.786 18 Si 0.910 3.090 19 H -0.269 1.269 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.230 4.230 23 C -0.063 4.063 24 H 0.105 0.895 25 H 0.098 0.902 26 H 0.118 0.882 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.283 0.717 36 H 0.095 0.905 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.769 -5.611 -7.070 16.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.167 4.167 3 C 0.011 3.989 4 O -0.284 6.284 5 C -0.009 4.009 6 C 0.297 3.703 7 O -0.388 6.388 8 O -0.267 6.267 9 C 0.066 3.934 10 C -0.238 4.238 11 C -0.093 4.093 12 C -0.190 4.190 13 C 0.116 3.884 14 C -0.484 4.484 15 H 0.099 0.901 16 C -0.144 4.144 17 N -0.410 5.410 18 Si 0.734 3.266 19 H -0.195 1.195 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.250 4.250 23 C -0.082 4.082 24 H 0.123 0.877 25 H 0.116 0.884 26 H 0.136 0.864 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.137 0.863 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.418 -6.182 -6.785 16.258 hybrid contribution 0.549 0.725 -0.178 0.927 sum -12.869 -5.457 -6.963 15.617 Atomic orbital electron populations 1.23844 0.95482 1.02350 1.00035 1.22722 0.95617 0.98183 1.00205 1.21633 0.88566 0.96313 0.92353 1.87993 1.44490 1.35134 1.60784 1.21721 0.92000 0.89110 0.98021 1.23057 0.82222 0.82443 0.82590 1.90656 1.71403 1.28362 1.48353 1.86670 1.40700 1.41924 1.57421 1.21757 0.85970 0.97277 0.88406 1.18655 0.99169 0.98740 1.07204 1.20547 0.94407 0.97200 0.97191 1.21298 1.01142 0.95266 1.01303 1.17696 0.90434 0.92100 0.88168 1.19674 0.93552 0.97777 1.37442 0.90147 1.25980 0.98366 0.97685 0.92376 1.69826 1.12215 1.26147 1.32821 0.86271 0.79358 0.82022 0.78969 1.19456 1.19917 1.18298 1.20953 1.00726 0.99008 1.04311 1.20394 0.97204 0.93738 0.96820 0.87702 0.88351 0.86379 0.92291 0.91796 0.88972 0.88919 0.91940 0.91852 0.89264 0.86255 0.90620 0.88672 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.24 14.31 29.01 0.42 -0.82 16 2 C -0.15 -1.28 9.89 -36.03 -0.36 -1.63 16 3 C 0.09 0.77 6.35 36.01 0.23 1.00 16 4 O -0.36 -4.70 9.86 -55.18 -0.54 -5.24 16 5 C 0.07 0.81 6.53 36.00 0.24 1.05 16 6 C 0.46 7.49 8.03 36.00 0.29 7.78 16 7 O -0.50 -9.78 16.25 -25.48 -0.41 -10.20 16 8 O -0.35 -6.33 10.20 -39.27 -0.40 -6.73 16 9 C 0.14 2.65 5.58 36.01 0.20 2.85 16 10 C -0.24 -5.21 5.54 -104.33 -0.58 -5.79 16 11 C -0.07 -1.74 9.67 -39.66 -0.38 -2.12 16 12 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 13 C 0.12 3.10 5.57 -106.82 -0.60 2.50 16 14 C -0.46 -11.73 9.05 -37.74 -0.34 -12.08 16 15 H 0.08 1.98 7.91 -52.48 -0.41 1.56 16 16 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 17 N -0.79 -19.72 10.97 55.55 0.61 -19.11 16 18 Si 0.91 18.00 29.59 -169.99 -5.03 12.97 16 19 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 20 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 21 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 22 C -0.23 -5.55 9.80 -38.88 -0.38 -5.94 16 23 C -0.06 -1.41 9.67 -39.66 -0.38 -1.79 16 24 H 0.10 0.59 8.06 -52.49 -0.42 0.17 16 25 H 0.10 0.57 7.90 -52.49 -0.41 0.15 16 26 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 27 H 0.06 0.43 7.86 -51.93 -0.41 0.02 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 32 H 0.06 1.18 8.07 -51.93 -0.42 0.77 16 33 H 0.09 1.88 8.06 -52.48 -0.42 1.45 16 34 H 0.12 3.12 6.18 -52.49 -0.32 2.79 16 35 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 36 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 37 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 331.02 15.07 4.99 4.99 Total: -1.00 -29.64 331.02 -7.79 -37.42 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -4.92 Total: 3.85 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -2.08 Total: -17.95 kcal Atomic # 7 Polarization: -19.72 SS G_CDS: 0.61 Total: -19.11 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -1.36 Total: -22.17 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.64 -7.79 -37.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776114093.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.402 kcal (2) G-P(sol) polarization free energy of solvation -29.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds