Wall clock time and date at job start Mon Mar 30 2020 02:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50702 * 119.99583 * 2 1 4 4 O 1.42902 * 109.46832 * 135.00599 * 3 2 1 5 5 C 1.42905 * 114.00016 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.46897 * 179.97438 * 5 4 3 7 7 O 1.20826 * 120.00427 * 0.02562 * 6 5 4 8 8 O 1.34236 * 119.99623 * 179.97438 * 6 5 4 9 9 C 1.45202 * 116.99861 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47010 * 180.02562 * 9 8 6 11 11 C 1.38634 * 119.74914 * 269.72756 * 10 9 8 12 12 C 1.37619 * 120.24942 * 179.72155 * 11 10 9 13 13 C 1.40717 * 119.73953 * 0.57349 * 12 11 10 14 14 C 1.41400 * 120.23665 * 179.68462 * 13 12 11 15 15 H 1.08007 * 119.99684 * 155.31480 * 14 13 12 16 16 C 1.39939 * 120.00333 * 335.30310 * 14 13 12 17 17 N 1.30826 * 120.00025 * 342.23859 * 16 14 13 18 18 Si 1.86800 * 120.00117 * 162.23840 * 16 14 13 19 19 H 1.48494 * 109.47119 * 94.66408 * 18 16 14 20 20 H 1.48501 * 109.47377 * 214.66748 * 18 16 14 21 21 H 1.48501 * 109.47174 * 334.66670 * 18 16 14 22 22 C 1.40711 * 119.51509 * 359.69926 * 13 12 11 23 23 C 1.37617 * 119.74404 * 0.02562 * 22 13 12 24 24 H 1.07996 * 119.99814 * 179.97438 * 1 2 3 25 25 H 1.07998 * 120.00084 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.00084 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47300 * 15.00757 * 3 2 1 28 28 H 1.09004 * 109.47202 * 255.00298 * 3 2 1 29 29 H 1.09000 * 109.46900 * 59.99557 * 5 4 3 30 30 H 1.09003 * 109.47026 * 299.99890 * 5 4 3 31 31 H 1.08994 * 109.46999 * 300.00667 * 9 8 6 32 32 H 1.08996 * 109.46818 * 60.00402 * 9 8 6 33 33 H 1.08008 * 119.87481 * 359.97438 * 11 10 9 34 34 H 1.07995 * 120.12746 * 180.27730 * 12 11 10 35 35 H 0.97003 * 119.99697 * 179.97438 * 17 16 14 36 36 H 1.07997 * 120.12552 * 179.97438 * 22 13 12 37 37 H 1.07995 * 119.87428 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1268 1.2413 0.9526 5 6 3.9085 2.4350 1.0320 6 6 4.9940 2.2568 2.0620 7 8 5.0889 1.2145 2.6657 8 8 5.8562 3.2559 2.3079 9 6 6.8764 3.0138 3.3125 10 6 7.7445 4.2377 3.4518 11 6 8.8809 4.3679 2.6684 12 6 9.6779 5.4839 2.7830 13 6 9.3421 6.4894 3.7085 14 6 10.1573 7.6373 3.8397 15 1 9.7368 8.5579 4.2170 16 6 11.5087 7.5806 3.4811 17 7 12.1054 6.4226 3.3603 18 14 12.4608 9.1583 3.1747 19 1 13.1660 9.5603 4.4181 20 1 13.4532 8.9355 2.0927 21 1 11.5199 10.2335 2.7697 22 6 8.1895 6.3439 4.5024 23 6 7.4041 5.2221 4.3667 24 1 -0.5399 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3855 2.1161 0.2661 28 1 2.4754 1.4869 -0.9927 29 1 3.2689 3.2696 1.3192 30 1 4.3587 2.6397 0.0607 31 1 6.4004 2.7956 4.2684 32 1 7.4899 2.1652 3.0100 33 1 9.1394 3.5924 1.9624 34 1 10.5602 5.5853 2.1686 35 1 13.0421 6.3834 3.1113 36 1 7.9228 7.1093 5.2161 37 1 6.5193 5.1081 4.9753 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776114093.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:28 Heat of formation + Delta-G solvation = -110.690481 kcal Electronic energy + Delta-G solvation = -19634.343523 eV Core-core repulsion = 16341.518099 eV Total energy + Delta-G solvation = -3292.825425 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.51352 -39.57943 -39.00697 -37.42129 -35.69167 -34.79606 -32.67015 -31.24592 -30.18345 -28.63613 -26.60390 -25.44940 -22.96539 -22.36254 -21.81012 -20.90145 -19.27527 -18.84994 -17.92839 -17.89804 -17.37364 -17.12487 -16.71735 -16.10488 -15.75963 -15.55109 -15.33619 -14.57232 -14.32426 -14.03967 -13.87505 -13.85438 -13.36449 -13.15187 -13.14595 -13.03621 -12.77942 -12.41761 -12.21875 -11.90106 -11.71328 -11.61638 -11.41222 -11.29745 -11.04395 -11.01414 -10.27401 -9.44535 -9.34588 -8.69774 -6.40059 0.66771 1.09956 1.12709 1.16211 1.38723 1.42803 1.54129 1.73588 2.19432 2.67212 3.05744 3.61008 3.80041 4.04854 4.07397 4.07815 4.14766 4.19338 4.23744 4.45162 4.47530 4.50799 4.54903 4.61611 4.98858 5.00229 5.11560 5.29482 5.38232 5.45147 5.64581 5.66489 5.68880 5.87418 6.02012 6.05106 6.13436 6.31216 6.63583 6.73485 6.87930 6.96377 8.27281 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.046471 B = 0.002572 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.378425 B =10885.541354 C =10978.615200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.178 4.178 3 C 0.083 3.917 4 O -0.397 6.397 5 C 0.075 3.925 6 C 0.454 3.546 7 O -0.536 6.536 8 O -0.355 6.355 9 C 0.142 3.858 10 C -0.231 4.231 11 C -0.080 4.080 12 C -0.194 4.194 13 C 0.087 3.913 14 C -0.492 4.492 15 H 0.080 0.920 16 C 0.034 3.966 17 N -0.819 5.819 18 Si 0.985 3.015 19 H -0.262 1.262 20 H -0.266 1.266 21 H -0.257 1.257 22 C -0.245 4.245 23 C -0.065 4.065 24 H 0.115 0.885 25 H 0.113 0.887 26 H 0.107 0.893 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.291 0.709 36 H 0.104 0.896 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.301 -5.234 -7.853 17.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.196 4.196 3 C 0.008 3.992 4 O -0.318 6.318 5 C -0.002 4.002 6 C 0.298 3.702 7 O -0.426 6.426 8 O -0.272 6.272 9 C 0.070 3.930 10 C -0.232 4.232 11 C -0.098 4.098 12 C -0.213 4.213 13 C 0.085 3.915 14 C -0.521 4.521 15 H 0.099 0.901 16 C -0.182 4.182 17 N -0.444 5.444 18 Si 0.805 3.195 19 H -0.187 1.187 20 H -0.190 1.190 21 H -0.181 1.181 22 C -0.264 4.264 23 C -0.083 4.083 24 H 0.134 0.866 25 H 0.131 0.869 26 H 0.125 0.875 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.101 0.899 36 H 0.122 0.878 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.975 -5.814 -7.578 17.762 hybrid contribution 0.848 0.450 0.055 0.962 sum -14.127 -5.364 -7.523 16.880 Atomic orbital electron populations 1.24074 0.94956 1.03589 0.97543 1.22775 0.96336 0.97948 1.02565 1.21860 0.87975 0.96974 0.92355 1.87949 1.45679 1.35881 1.62254 1.21868 0.91080 0.89691 0.97521 1.24030 0.82210 0.81262 0.82701 1.90643 1.72329 1.29636 1.49985 1.86630 1.40821 1.42753 1.56981 1.21556 0.86295 0.95741 0.89424 1.18948 0.98945 0.99264 1.06017 1.20782 0.94489 0.96910 0.97642 1.21274 1.01538 0.96559 1.01976 1.18060 0.91622 0.92796 0.89020 1.19928 0.94731 0.97936 1.39461 0.90140 1.26842 0.98808 1.01090 0.91428 1.69873 1.12947 1.28218 1.33353 0.85152 0.77785 0.77453 0.79112 1.18672 1.18994 1.18076 1.21171 1.00664 1.00130 1.04466 1.20714 0.97744 0.92951 0.96865 0.86648 0.86923 0.87507 0.90429 0.90205 0.85971 0.86088 0.90994 0.91529 0.87528 0.87770 0.89858 0.87804 0.86327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 14.31 67.77 0.97 -0.93 16 2 C -0.18 -2.79 9.89 25.64 0.25 -2.54 16 3 C 0.08 1.28 6.35 71.24 0.45 1.73 16 4 O -0.40 -9.47 9.86 -129.90 -1.28 -10.76 16 5 C 0.08 1.55 6.53 71.23 0.47 2.02 16 6 C 0.45 14.13 8.03 71.23 0.57 14.70 16 7 O -0.54 -20.51 16.25 28.40 0.46 -20.05 16 8 O -0.35 -12.16 10.20 -51.47 -0.53 -12.68 16 9 C 0.14 5.25 5.58 71.24 0.40 5.65 16 10 C -0.23 -9.95 5.54 -19.68 -0.11 -10.06 16 11 C -0.08 -3.71 9.67 22.22 0.21 -3.50 16 12 C -0.19 -10.16 8.70 22.73 0.20 -9.96 16 13 C 0.09 4.69 5.57 -21.29 -0.12 4.57 16 14 C -0.49 -26.01 9.05 23.46 0.21 -25.80 16 15 H 0.08 4.07 7.91 -2.91 -0.02 4.05 16 16 C 0.03 1.69 5.14 85.25 0.44 2.13 16 17 N -0.82 -42.04 10.97 21.82 0.24 -41.80 16 18 Si 0.98 37.06 29.59 68.60 2.03 39.09 16 19 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 20 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16 21 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 22 C -0.24 -11.88 9.80 22.73 0.22 -11.65 16 23 C -0.06 -2.81 9.67 22.22 0.21 -2.60 16 24 H 0.12 1.05 8.06 -2.91 -0.02 1.02 16 25 H 0.11 0.96 7.90 -2.91 -0.02 0.94 16 26 H 0.11 1.85 8.06 -2.91 -0.02 1.82 16 27 H 0.08 0.87 7.86 -2.39 -0.02 0.86 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.07 2.52 8.07 -2.39 -0.02 2.51 16 32 H 0.07 2.41 8.07 -2.39 -0.02 2.39 16 33 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 34 H 0.10 5.67 6.18 -2.91 -0.02 5.65 16 35 H 0.29 13.40 8.30 -92.71 -0.77 12.63 16 36 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 37 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -65.27 331.02 6.36 -58.90 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 1.05 Total: 23.53 kcal Atomic # 6 Polarization: -40.62 SS G_CDS: 4.38 Total: -36.24 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: 0.24 Total: -41.80 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -1.34 Total: -43.49 kcal Atomic # 14 Polarization: 37.06 SS G_CDS: 2.03 Total: 39.09 kcal Total: -65.27 6.36 -58.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776114093.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.786 kcal (2) G-P(sol) polarization free energy of solvation -65.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds