Wall clock time and date at job start Mon Mar 30 2020 02:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50694 * 109.47293 * 2 1 4 4 O 1.20761 * 119.99999 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00225 * 179.97438 * 3 2 1 6 6 O 1.45194 * 109.47450 * 180.02562 * 5 3 2 7 7 C 1.34229 * 117.00124 * 179.97438 * 6 5 3 8 8 O 1.20816 * 120.00012 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99826 * 179.97438 * 7 6 5 10 10 C 1.50704 * 109.46838 * 180.02562 * 9 7 6 11 11 C 1.37639 * 120.12180 * 264.99608 * 10 9 7 12 12 C 1.38610 * 120.24594 * 179.97438 * 11 10 9 13 13 C 1.38661 * 120.50527 * 0.02562 * 12 11 10 14 14 C 1.37593 * 120.24160 * 0.02562 * 13 12 11 15 15 C 1.40699 * 120.13207 * 84.72627 * 10 9 7 16 16 C 1.41398 * 120.24049 * 359.97438 * 15 10 9 17 17 H 1.08002 * 119.99937 * 329.69760 * 16 15 10 18 18 C 1.39938 * 119.99671 * 149.70751 * 16 15 10 19 19 N 1.30822 * 120.00022 * 162.01229 * 18 16 15 20 20 Si 1.86803 * 120.00276 * 342.00724 * 18 16 15 21 21 H 1.48502 * 109.46988 * 95.40559 * 20 18 16 22 22 H 1.48498 * 109.47138 * 215.40343 * 20 18 16 23 23 H 1.48497 * 109.46831 * 335.40536 * 20 18 16 24 24 H 1.09005 * 109.47071 * 59.99825 * 1 2 3 25 25 H 1.09007 * 109.47553 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47348 * 299.99928 * 1 2 3 27 27 H 1.09004 * 109.47003 * 239.99730 * 2 1 3 28 28 H 1.09005 * 109.47071 * 120.00175 * 2 1 3 29 29 H 1.08999 * 109.47246 * 59.99989 * 5 3 2 30 30 H 1.09011 * 109.47118 * 300.00213 * 5 3 2 31 31 H 1.09007 * 109.46987 * 299.99779 * 9 7 6 32 32 H 1.08993 * 109.47616 * 60.00405 * 9 7 6 33 33 H 1.08002 * 119.87932 * 0.02562 * 11 10 9 34 34 H 1.08006 * 119.75215 * 180.02562 * 12 11 10 35 35 H 1.07995 * 119.87621 * 180.02562 * 13 12 11 36 36 H 1.08006 * 120.12261 * 179.97438 * 14 13 12 37 37 H 0.97003 * 120.00475 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 1.2476 2.3386 0.0005 5 6 3.5139 1.6961 0.0006 6 8 3.7397 3.1304 0.0011 7 6 5.0159 3.5464 0.0022 8 8 5.9145 2.7389 0.0022 9 6 5.3277 5.0208 0.0022 10 6 6.8218 5.2182 0.0029 11 6 7.4924 5.4118 1.1891 12 6 8.8666 5.5931 1.1928 13 6 9.5812 5.5823 0.0046 14 6 8.9313 5.3915 -1.1931 15 6 7.5372 5.1997 -1.2085 16 6 6.8597 4.9955 -2.4327 17 1 5.9618 4.3960 -2.4594 18 6 7.3528 5.5701 -3.6095 19 7 6.9606 5.1175 -4.7726 20 14 8.5710 6.9834 -3.5198 21 1 9.9536 6.4528 -3.6297 22 1 8.3140 7.9299 -4.6348 23 1 8.4137 7.6908 -2.2237 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.9655 1.2572 -0.8891 30 1 3.9647 1.2574 0.8909 31 1 4.9010 5.4825 -0.8884 32 1 4.8995 5.4829 0.8916 33 1 6.9460 5.4216 2.1207 34 1 9.3848 5.7439 2.1284 35 1 10.6517 5.7241 0.0193 36 1 9.4898 5.3839 -2.1176 37 1 7.3020 5.5160 -5.5885 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777158626.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:00 Heat of formation + Delta-G solvation = -114.579462 kcal Electronic energy + Delta-G solvation = -20740.508160 eV Core-core repulsion = 17447.514096 eV Total energy + Delta-G solvation = -3292.994064 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.25868 -39.26197 -37.86363 -35.80041 -33.63053 -33.11067 -32.04117 -30.37725 -29.38910 -27.12931 -24.98992 -24.07743 -21.56583 -21.04119 -19.79340 -19.38834 -17.39814 -17.18904 -16.57936 -16.55633 -15.70189 -15.47566 -15.38417 -14.49757 -14.24580 -14.13649 -13.74713 -13.47961 -12.78106 -12.61944 -12.53221 -12.34759 -12.16789 -11.95677 -11.88939 -11.45989 -11.41975 -11.23056 -10.84654 -10.78116 -10.43777 -10.28332 -9.99166 -9.74620 -9.67665 -9.55767 -9.15395 -7.65985 -7.56773 -6.97012 -4.52865 1.81485 2.40049 2.67593 2.86731 2.97083 3.10882 3.21931 3.31284 3.96570 4.01282 4.49303 4.67135 4.81128 4.97911 5.13505 5.21354 5.31972 5.43498 5.55057 5.58428 5.67077 5.81403 5.88201 5.95350 6.05141 6.15012 6.27864 6.52064 6.68073 6.81955 6.91492 7.16205 7.37638 7.39599 7.61358 7.70500 7.85455 8.09543 8.30030 8.38449 8.62875 8.77649 10.04993 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.021503 B = 0.004608 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.828429 B = 6074.729351 C = 6972.724677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.168 4.168 3 C 0.353 3.647 4 O -0.429 6.429 5 C 0.012 3.988 6 O -0.350 6.350 7 C 0.461 3.539 8 O -0.492 6.492 9 C -0.044 4.044 10 C -0.181 4.181 11 C -0.064 4.064 12 C -0.243 4.243 13 C -0.076 4.076 14 C -0.233 4.233 15 C 0.111 3.889 16 C -0.446 4.446 17 H 0.088 0.912 18 C 0.085 3.915 19 N -0.806 5.806 20 Si 0.911 3.089 21 H -0.271 1.271 22 H -0.291 1.291 23 H -0.243 1.243 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.117 -6.178 7.169 11.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.206 4.206 3 C 0.226 3.774 4 O -0.300 6.300 5 C -0.063 4.063 6 O -0.267 6.267 7 C 0.304 3.696 8 O -0.378 6.378 9 C -0.081 4.081 10 C -0.183 4.183 11 C -0.082 4.082 12 C -0.263 4.263 13 C -0.095 4.095 14 C -0.252 4.252 15 C 0.108 3.892 16 C -0.474 4.474 17 H 0.106 0.894 18 C -0.134 4.134 19 N -0.430 5.430 20 Si 0.738 3.262 21 H -0.197 1.197 22 H -0.218 1.218 23 H -0.166 1.166 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.131 0.869 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.334 -5.981 6.869 11.693 hybrid contribution 0.842 0.158 -0.233 0.888 sum -6.491 -5.823 6.636 10.958 Atomic orbital electron populations 1.21596 0.93384 1.01910 1.03290 1.21978 0.98517 0.94938 1.05131 1.24588 0.89568 0.91522 0.71731 1.90428 1.58403 1.47563 1.33650 1.23318 0.96233 0.81822 1.04938 1.86635 1.31136 1.23883 1.85096 1.24470 0.79438 0.93735 0.72006 1.90647 1.46848 1.56060 1.44198 1.20002 0.96104 0.87112 1.04880 1.19063 0.91534 1.13831 0.93849 1.20461 0.94198 0.97913 0.95615 1.20341 0.94040 1.15438 0.96436 1.20627 0.97596 0.98101 0.93147 1.21009 0.94627 1.13021 0.96499 1.17480 0.91097 0.88086 0.92566 1.19434 1.10633 1.27558 0.89767 0.89405 1.26167 0.95253 0.97431 0.94539 1.69698 1.38051 1.36191 0.99028 0.86317 0.79918 0.80788 0.79220 1.19691 1.21835 1.16576 0.91933 0.91864 0.92041 0.87972 0.88111 0.87953 0.88296 0.86908 0.88929 0.88858 0.88837 0.88853 0.88181 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.20 37.15 0.34 -0.84 16 2 C -0.17 -1.34 6.36 -27.89 -0.18 -1.51 16 3 C 0.35 4.37 7.24 -29.04 -0.21 4.16 16 4 O -0.43 -6.93 16.12 -13.71 -0.22 -7.16 16 5 C 0.01 0.16 5.88 36.01 0.21 0.38 16 6 O -0.35 -6.36 9.75 -45.92 -0.45 -6.81 16 7 C 0.46 9.38 7.55 36.01 0.27 9.65 16 8 O -0.49 -11.32 15.78 -18.74 -0.30 -11.62 16 9 C -0.04 -0.87 5.30 -29.03 -0.15 -1.02 16 10 C -0.18 -4.15 4.43 -103.91 -0.46 -4.61 16 11 C -0.06 -1.35 9.66 -39.66 -0.38 -1.73 16 12 C -0.24 -5.12 10.05 -39.29 -0.39 -5.52 16 13 C -0.08 -1.69 10.02 -39.66 -0.40 -2.09 16 14 C -0.23 -5.70 7.17 -38.88 -0.28 -5.98 16 15 C 0.11 2.81 5.10 -106.82 -0.54 2.27 16 16 C -0.45 -11.94 8.55 -37.74 -0.32 -12.26 16 17 H 0.09 2.48 6.99 -52.49 -0.37 2.11 16 18 C 0.09 2.23 5.41 -17.35 -0.09 2.13 16 19 N -0.81 -21.41 13.93 55.55 0.77 -20.63 16 20 Si 0.91 20.69 24.52 -169.99 -4.17 16.52 16 21 H -0.27 -6.02 6.71 56.52 0.38 -5.64 16 22 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 23 H -0.24 -5.61 6.85 56.52 0.39 -5.22 16 24 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 25 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 26 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 27 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.10 1.37 8.13 -51.93 -0.42 0.95 16 30 H 0.10 1.18 8.13 -51.92 -0.42 0.76 16 31 H 0.11 2.27 7.15 -51.92 -0.37 1.90 16 32 H 0.09 1.52 8.05 -51.93 -0.42 1.10 16 33 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.09 1.71 8.06 -52.48 -0.42 1.28 16 35 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.10 2.44 4.74 -52.48 -0.25 2.19 16 37 H 0.29 6.87 8.30 -40.82 -0.34 6.53 16 LS Contribution 319.00 15.07 4.81 4.81 Total: -1.00 -31.63 319.00 -6.94 -38.57 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -4.80 Total: 3.27 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -2.59 Total: -16.97 kcal Atomic # 7 Polarization: -21.41 SS G_CDS: 0.77 Total: -20.63 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.96 Total: -25.58 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.17 Total: 16.52 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.63 -6.94 -38.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777158626.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.007 kcal (2) G-P(sol) polarization free energy of solvation -31.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds