Wall clock time and date at job start Mon Mar 30 2020 02:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50694 * 109.47293 * 2 1 4 4 O 1.20761 * 119.99999 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00225 * 179.97438 * 3 2 1 6 6 O 1.45194 * 109.47450 * 180.02562 * 5 3 2 7 7 C 1.34229 * 117.00124 * 179.97438 * 6 5 3 8 8 O 1.20816 * 120.00012 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99826 * 179.97438 * 7 6 5 10 10 C 1.50704 * 109.46838 * 180.02562 * 9 7 6 11 11 C 1.37639 * 120.12180 * 264.99608 * 10 9 7 12 12 C 1.38610 * 120.24594 * 179.97438 * 11 10 9 13 13 C 1.38661 * 120.50527 * 0.02562 * 12 11 10 14 14 C 1.37593 * 120.24160 * 0.02562 * 13 12 11 15 15 C 1.40699 * 120.13207 * 84.72627 * 10 9 7 16 16 C 1.41398 * 120.24049 * 359.97438 * 15 10 9 17 17 H 1.08002 * 119.99937 * 329.69760 * 16 15 10 18 18 C 1.39938 * 119.99671 * 149.70751 * 16 15 10 19 19 N 1.30822 * 120.00022 * 162.01229 * 18 16 15 20 20 Si 1.86803 * 120.00276 * 342.00724 * 18 16 15 21 21 H 1.48502 * 109.46988 * 95.40559 * 20 18 16 22 22 H 1.48498 * 109.47138 * 215.40343 * 20 18 16 23 23 H 1.48497 * 109.46831 * 335.40536 * 20 18 16 24 24 H 1.09005 * 109.47071 * 59.99825 * 1 2 3 25 25 H 1.09007 * 109.47553 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47348 * 299.99928 * 1 2 3 27 27 H 1.09004 * 109.47003 * 239.99730 * 2 1 3 28 28 H 1.09005 * 109.47071 * 120.00175 * 2 1 3 29 29 H 1.08999 * 109.47246 * 59.99989 * 5 3 2 30 30 H 1.09011 * 109.47118 * 300.00213 * 5 3 2 31 31 H 1.09007 * 109.46987 * 299.99779 * 9 7 6 32 32 H 1.08993 * 109.47616 * 60.00405 * 9 7 6 33 33 H 1.08002 * 119.87932 * 0.02562 * 11 10 9 34 34 H 1.08006 * 119.75215 * 180.02562 * 12 11 10 35 35 H 1.07995 * 119.87621 * 180.02562 * 13 12 11 36 36 H 1.08006 * 120.12261 * 179.97438 * 14 13 12 37 37 H 0.97003 * 120.00475 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 1.2476 2.3386 0.0005 5 6 3.5139 1.6961 0.0006 6 8 3.7397 3.1304 0.0011 7 6 5.0159 3.5464 0.0022 8 8 5.9145 2.7389 0.0022 9 6 5.3277 5.0208 0.0022 10 6 6.8218 5.2182 0.0029 11 6 7.4924 5.4118 1.1891 12 6 8.8666 5.5931 1.1928 13 6 9.5812 5.5823 0.0046 14 6 8.9313 5.3915 -1.1931 15 6 7.5372 5.1997 -1.2085 16 6 6.8597 4.9955 -2.4327 17 1 5.9618 4.3960 -2.4594 18 6 7.3528 5.5701 -3.6095 19 7 6.9606 5.1175 -4.7726 20 14 8.5710 6.9834 -3.5198 21 1 9.9536 6.4528 -3.6297 22 1 8.3140 7.9299 -4.6348 23 1 8.4137 7.6908 -2.2237 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.9655 1.2572 -0.8891 30 1 3.9647 1.2574 0.8909 31 1 4.9010 5.4825 -0.8884 32 1 4.8995 5.4829 0.8916 33 1 6.9460 5.4216 2.1207 34 1 9.3848 5.7439 2.1284 35 1 10.6517 5.7241 0.0193 36 1 9.4898 5.3839 -2.1176 37 1 7.3020 5.5160 -5.5885 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777158626.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:59 Heat of formation + Delta-G solvation = -132.271162 kcal Electronic energy + Delta-G solvation = -20741.275330 eV Core-core repulsion = 17447.514096 eV Total energy + Delta-G solvation = -3293.761233 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.69784 -40.49778 -39.56497 -37.34385 -35.51925 -33.89900 -33.70110 -32.20567 -30.58074 -28.71991 -26.79617 -24.99670 -23.29495 -22.66116 -21.16129 -20.66153 -19.28612 -18.71079 -17.91817 -17.85691 -17.35917 -16.63339 -16.56584 -16.20459 -15.81488 -15.54156 -15.37729 -14.67582 -14.53387 -13.96455 -13.84056 -13.77701 -13.60611 -13.24863 -13.15451 -12.85353 -12.71674 -12.62707 -12.53865 -12.06511 -12.01855 -11.82666 -11.57885 -11.54756 -11.43404 -10.98864 -10.73179 -9.43020 -9.36552 -8.89226 -6.49680 0.69941 0.82396 0.88202 1.26361 1.27244 1.38986 1.49631 1.65944 2.12772 2.62273 2.94210 3.52058 3.86842 3.95673 4.02517 4.13938 4.21750 4.22634 4.27382 4.36693 4.45342 4.51826 4.68855 4.77244 4.89066 4.92078 4.98478 5.03307 5.13229 5.29769 5.32019 5.34101 5.64177 5.83776 5.91375 6.02037 6.25442 6.39425 6.42481 6.75109 6.82165 6.86564 8.18853 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.021503 B = 0.004608 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.828429 B = 6074.729351 C = 6972.724677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.159 4.159 3 C 0.361 3.639 4 O -0.475 6.475 5 C -0.003 4.003 6 O -0.359 6.359 7 C 0.467 3.533 8 O -0.525 6.525 9 C -0.048 4.048 10 C -0.186 4.186 11 C -0.071 4.071 12 C -0.229 4.229 13 C -0.085 4.085 14 C -0.255 4.255 15 C 0.086 3.914 16 C -0.475 4.475 17 H 0.054 0.946 18 C 0.048 3.952 19 N -0.850 5.850 20 Si 0.965 3.035 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.249 1.249 24 H 0.044 0.956 25 H 0.089 0.911 26 H 0.050 0.950 27 H 0.125 0.875 28 H 0.133 0.867 29 H 0.105 0.895 30 H 0.123 0.877 31 H 0.101 0.899 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.125 0.875 36 H 0.094 0.906 37 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.378 -6.478 9.678 13.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.196 4.196 3 C 0.237 3.763 4 O -0.349 6.349 5 C -0.077 4.077 6 O -0.276 6.276 7 C 0.311 3.689 8 O -0.414 6.414 9 C -0.085 4.085 10 C -0.188 4.188 11 C -0.089 4.089 12 C -0.247 4.247 13 C -0.103 4.103 14 C -0.274 4.274 15 C 0.084 3.916 16 C -0.505 4.505 17 H 0.072 0.928 18 C -0.166 4.166 19 N -0.477 5.477 20 Si 0.788 3.212 21 H -0.189 1.189 22 H -0.205 1.205 23 H -0.172 1.172 24 H 0.064 0.936 25 H 0.108 0.892 26 H 0.069 0.931 27 H 0.143 0.857 28 H 0.151 0.849 29 H 0.123 0.877 30 H 0.141 0.859 31 H 0.119 0.881 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.143 0.857 36 H 0.111 0.889 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.608 -6.294 9.384 13.089 hybrid contribution 0.589 0.159 -0.782 0.992 sum -6.019 -6.135 8.601 12.159 Atomic orbital electron populations 1.21631 0.93521 1.03189 1.01991 1.22064 0.98234 0.91605 1.07652 1.25148 0.88211 0.93215 0.69766 1.90425 1.58994 1.49297 1.36187 1.23829 0.98094 0.79459 1.06282 1.86598 1.29709 1.26776 1.84511 1.24399 0.79724 0.93668 0.71099 1.90619 1.47831 1.56899 1.46002 1.20062 0.94864 0.87378 1.06156 1.19443 0.93032 1.12510 0.93788 1.20925 0.94823 0.96826 0.96343 1.20901 0.94167 1.12078 0.97585 1.21031 0.99417 0.97314 0.92549 1.21158 0.94426 1.14204 0.97574 1.17701 0.91902 0.89020 0.92975 1.19357 1.10508 1.29205 0.91388 0.92791 1.26813 0.96700 0.99071 0.94024 1.69733 1.40281 1.37980 0.99695 0.85498 0.78326 0.78324 0.79016 1.18925 1.20541 1.17233 0.93645 0.89194 0.93063 0.85698 0.84889 0.87680 0.85934 0.88054 0.85090 0.85219 0.85030 0.85718 0.88867 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.20 71.98 0.66 -1.48 16 2 C -0.16 -2.13 6.36 29.84 0.19 -1.94 16 3 C 0.36 8.65 7.24 29.10 0.21 8.86 16 4 O -0.47 -15.50 16.12 17.39 0.28 -15.22 16 5 C 0.00 -0.07 5.88 71.24 0.42 0.35 16 6 O -0.36 -13.13 9.75 -45.04 -0.44 -13.57 16 7 C 0.47 19.12 7.55 71.24 0.54 19.66 16 8 O -0.53 -24.35 15.78 21.99 0.35 -24.00 16 9 C -0.05 -1.88 5.30 29.10 0.15 -1.72 16 10 C -0.19 -8.35 4.43 -19.40 -0.09 -8.44 16 11 C -0.07 -2.78 9.66 22.22 0.21 -2.56 16 12 C -0.23 -8.65 10.05 22.46 0.23 -8.43 16 13 C -0.09 -3.51 10.02 22.22 0.22 -3.28 16 14 C -0.25 -12.31 7.17 22.73 0.16 -12.14 16 15 C 0.09 4.44 5.10 -21.29 -0.11 4.33 16 16 C -0.48 -26.67 8.55 23.46 0.20 -26.47 16 17 H 0.05 3.27 6.99 -2.91 -0.02 3.25 16 18 C 0.05 2.62 5.41 85.26 0.46 3.08 16 19 N -0.85 -47.30 13.93 21.82 0.30 -47.00 16 20 Si 0.96 43.34 24.52 68.60 1.68 45.02 16 21 H -0.26 -11.37 6.71 99.48 0.67 -10.71 16 22 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.25 -11.26 6.85 99.48 0.68 -10.58 16 24 H 0.04 0.81 8.10 -2.38 -0.02 0.79 16 25 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 27 H 0.13 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.13 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.11 2.81 8.13 -2.39 -0.02 2.79 16 30 H 0.12 2.74 8.13 -2.38 -0.02 2.72 16 31 H 0.10 4.24 7.15 -2.38 -0.02 4.22 16 32 H 0.13 4.03 8.05 -2.39 -0.02 4.01 16 33 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 34 H 0.13 4.01 8.06 -2.91 -0.02 3.98 16 35 H 0.12 4.29 8.06 -2.91 -0.02 4.26 16 36 H 0.09 4.54 4.74 -2.91 -0.01 4.53 16 37 H 0.29 14.65 8.30 -92.71 -0.77 13.88 16 Total: -1.00 -71.60 319.00 6.65 -64.95 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 1.01 Total: 20.01 kcal Atomic # 6 Polarization: -33.65 SS G_CDS: 3.47 Total: -30.19 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.30 Total: -47.00 kcal Atomic # 8 Polarization: -52.98 SS G_CDS: 0.19 Total: -52.79 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.68 Total: 45.02 kcal Total: -71.60 6.65 -64.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777158626.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.325 kcal (2) G-P(sol) polarization free energy of solvation -71.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds