Wall clock time and date at job start Mon Mar 30 2020 01:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48495 * 109.46929 * 239.99788 * 3 2 1 5 5 H 1.48503 * 109.47123 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47446 * 119.99371 * 3 2 1 7 7 C 1.39942 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00058 * 163.66203 * 7 2 1 9 9 C 1.41395 * 120.00374 * 343.66520 * 7 2 1 10 10 C 1.40740 * 120.23988 * 334.05174 * 9 7 2 11 11 C 1.37596 * 119.74423 * 180.02562 * 10 9 7 12 12 C 1.38655 * 120.24741 * 359.97438 * 11 10 9 13 13 C 1.38607 * 120.50237 * 359.97438 * 12 11 10 14 14 C 1.37642 * 120.25094 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.12724 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47153 * 264.99457 * 15 14 13 17 17 O 1.20824 * 119.99801 * 0.02562 * 16 15 14 18 18 O 1.34231 * 120.00119 * 180.02562 * 16 15 14 19 19 C 1.45197 * 117.00069 * 179.97438 * 18 16 15 20 20 H 1.09002 * 110.45735 * 330.70304 * 19 18 16 21 21 C 1.54506 * 110.51165 * 208.09660 * 19 18 16 22 22 C 1.54477 * 104.06192 * 241.35682 * 21 19 18 23 23 O 1.44427 * 104.80653 * 23.97896 * 22 21 19 24 24 C 1.44786 * 105.29322 * 319.45256 * 23 22 21 25 25 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.12777 * 359.97438 * 10 9 7 27 27 H 1.07997 * 119.87191 * 180.02562 * 11 10 9 28 28 H 1.07999 * 119.74458 * 179.97438 * 12 11 10 29 29 H 1.08003 * 119.87673 * 179.74040 * 13 12 11 30 30 H 1.08997 * 109.47316 * 25.00205 * 15 14 13 31 31 H 1.09007 * 109.46711 * 144.99581 * 15 14 13 32 32 H 1.08998 * 110.51342 * 0.02562 * 21 19 18 33 33 H 1.08994 * 110.51258 * 122.57956 * 21 19 18 34 34 H 1.09003 * 110.37633 * 142.80787 * 22 21 19 35 35 H 1.09000 * 110.37200 * 265.03672 * 22 21 19 36 36 H 1.08994 * 110.42521 * 281.77575 * 24 23 22 37 37 H 1.09004 * 110.48475 * 159.32201 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6963 -1.2124 5 1 1.2773 2.7465 -0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0553 -1.2309 -0.2626 9 6 1.3439 -2.4116 0.3455 10 6 0.2128 -2.3803 1.1824 11 6 -0.4253 -3.5540 1.5120 12 6 0.0418 -4.7642 1.0224 13 6 1.1542 -4.8069 0.1965 14 6 1.8082 -3.6453 -0.1463 15 6 3.0177 -3.6950 -1.0439 16 6 4.2672 -3.7242 -0.2020 17 8 4.1841 -3.7071 1.0033 18 8 5.4726 -3.7694 -0.7910 19 6 6.6324 -3.7949 0.0821 20 1 6.4173 -3.2765 1.0165 21 6 7.8532 -3.1601 -0.6207 22 6 8.8857 -4.3070 -0.6884 23 8 8.0988 -5.5164 -0.6242 24 6 7.0696 -5.2505 0.3589 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1524 -1.4388 1.5651 27 1 -1.2936 -3.5323 2.1537 28 1 -0.4650 -5.6806 1.2866 29 1 1.5119 -5.7555 -0.1757 30 1 2.9749 -4.5917 -1.6620 31 1 3.0315 -2.8128 -1.6840 32 1 7.5859 -2.8266 -1.6235 33 1 8.2417 -2.3279 -0.0338 34 1 9.4396 -4.2642 -1.6263 35 1 9.5699 -4.2521 0.1583 36 1 7.4743 -5.3400 1.3670 37 1 6.2289 -5.9313 0.2247 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779458237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:02 Heat of formation + Delta-G solvation = -117.971097 kcal Electronic energy + Delta-G solvation = -21218.038908 eV Core-core repulsion = 17924.897772 eV Total energy + Delta-G solvation = -3293.141136 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.33306 -38.84683 -37.53957 -35.67453 -33.67991 -32.01942 -31.41644 -29.52465 -28.97437 -27.04861 -25.11800 -23.30660 -21.84991 -20.98924 -20.58206 -19.37856 -17.41157 -17.22480 -16.68160 -16.32537 -15.62175 -15.42967 -15.12995 -14.73038 -14.45975 -13.73768 -13.64492 -13.03197 -12.68114 -12.61623 -12.36389 -12.10720 -11.77676 -11.64270 -11.59749 -11.23753 -11.13426 -11.04344 -10.93487 -10.75380 -10.49685 -10.45422 -9.80928 -9.74291 -9.54358 -9.43559 -9.20585 -7.39118 -7.36525 -6.79128 -4.41230 2.66011 2.85247 2.88939 3.03348 3.06219 3.23653 3.30895 3.79691 3.89666 4.41020 4.60866 4.67206 4.88498 4.91123 5.15276 5.33711 5.48326 5.52492 5.58473 5.69800 5.78460 5.82981 5.95598 6.09520 6.24270 6.38334 6.46372 6.55084 6.73013 6.95891 7.03070 7.23681 7.35926 7.58320 7.85684 7.99372 8.07413 8.24886 8.42020 8.58864 8.84782 8.94544 10.14967 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.016703 B = 0.005760 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.907660 B = 4859.642877 C = 6239.881691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.078 3.922 3 Si 0.904 3.096 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.459 4.459 8 H 0.073 0.927 9 C 0.131 3.869 10 C -0.158 4.158 11 C -0.104 4.104 12 C -0.239 4.239 13 C -0.077 4.077 14 C -0.196 4.196 15 C -0.042 4.042 16 C 0.457 3.543 17 O -0.492 6.492 18 O -0.354 6.354 19 C 0.052 3.948 20 H 0.100 0.900 21 C -0.153 4.153 22 C 0.046 3.954 23 O -0.372 6.372 24 C 0.034 3.966 25 H 0.281 0.719 26 H 0.118 0.882 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.568 -3.291 -1.768 12.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.489 4.489 8 H 0.091 0.909 9 C 0.128 3.872 10 C -0.177 4.177 11 C -0.122 4.122 12 C -0.259 4.259 13 C -0.095 4.095 14 C -0.197 4.197 15 C -0.079 4.079 16 C 0.300 3.700 17 O -0.377 6.377 18 O -0.272 6.272 19 C -0.004 4.004 20 H 0.118 0.882 21 C -0.191 4.191 22 C -0.031 4.031 23 O -0.290 6.290 24 C -0.043 4.043 25 H 0.092 0.908 26 H 0.136 0.864 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.126 0.874 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.390 -3.314 -1.519 11.959 hybrid contribution 0.301 1.025 0.335 1.119 sum 11.691 -2.290 -1.184 11.972 Atomic orbital electron populations 1.69804 1.07487 1.29344 1.35040 1.25876 0.94719 1.01181 0.92207 0.86434 0.80272 0.80456 0.80024 1.18927 1.20206 1.18870 1.19450 0.97190 0.91090 1.41122 0.90896 1.17340 0.90813 0.91169 0.87844 1.21300 0.98895 0.96746 1.00794 1.20704 0.98553 0.93434 0.99558 1.20316 1.01558 0.96260 1.07737 1.20327 0.95842 0.95518 0.97791 1.19049 0.99465 0.94312 1.06883 1.19995 0.86734 1.04268 0.96900 1.24588 0.84512 0.71835 0.89077 1.90629 1.86816 1.44208 1.16071 1.86677 1.14852 1.84590 1.41115 1.23984 0.84675 0.96897 0.94825 0.88233 1.23089 0.93668 0.98918 1.03425 1.23420 0.93691 0.83631 1.02361 1.89210 1.43877 1.35170 1.60785 1.23896 0.91838 0.95911 0.92630 0.90759 0.86445 0.89434 0.89489 0.89528 0.89295 0.87425 0.88795 0.89237 0.88668 0.92071 0.90740 0.88305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.12 10.97 55.55 0.61 -19.51 16 2 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 3 Si 0.90 18.58 29.59 -169.99 -5.03 13.55 16 4 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.46 -11.93 8.14 -37.74 -0.31 -12.23 16 8 H 0.07 1.84 6.68 -52.48 -0.35 1.49 16 9 C 0.13 3.45 5.56 -106.83 -0.59 2.85 16 10 C -0.16 -4.15 8.68 -38.87 -0.34 -4.49 16 11 C -0.10 -2.49 10.02 -39.66 -0.40 -2.89 16 12 C -0.24 -5.47 10.05 -39.29 -0.39 -5.87 16 13 C -0.08 -1.74 9.66 -39.66 -0.38 -2.12 16 14 C -0.20 -4.66 4.43 -103.91 -0.46 -5.12 16 15 C -0.04 -0.83 5.29 -29.04 -0.15 -0.99 16 16 C 0.46 9.17 7.59 36.00 0.27 9.44 16 17 O -0.49 -11.30 15.27 -18.75 -0.29 -11.59 16 18 O -0.35 -6.14 9.88 -39.26 -0.39 -6.52 16 19 C 0.05 0.75 3.44 -25.16 -0.09 0.66 16 20 H 0.10 1.51 7.20 -51.93 -0.37 1.14 16 21 C -0.15 -1.69 6.90 -25.17 -0.17 -1.86 16 22 C 0.05 0.46 7.63 37.93 0.29 0.75 16 23 O -0.37 -5.02 11.66 -35.23 -0.41 -5.43 16 24 C 0.03 0.45 7.41 37.94 0.28 0.73 16 25 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 26 H 0.12 3.16 6.22 -52.49 -0.33 2.84 16 27 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 28 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 29 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 30 H 0.09 1.51 8.05 -51.93 -0.42 1.09 16 31 H 0.11 2.13 7.06 -51.93 -0.37 1.77 16 32 H 0.09 1.06 8.00 -51.93 -0.42 0.64 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.10 1.39 8.09 -51.93 -0.42 0.97 16 LS Contribution 315.00 15.07 4.75 4.75 Total: -1.00 -29.64 315.00 -8.06 -37.70 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -4.77 Total: 6.33 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -2.53 Total: -19.28 kcal Atomic # 7 Polarization: -20.12 SS G_CDS: 0.61 Total: -19.51 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -1.08 Total: -23.54 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.64 -8.06 -37.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779458237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.271 kcal (2) G-P(sol) polarization free energy of solvation -29.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds