Wall clock time and date at job start Mon Mar 30 2020 01:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48495 * 109.46929 * 239.99788 * 3 2 1 5 5 H 1.48503 * 109.47123 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47446 * 119.99371 * 3 2 1 7 7 C 1.39942 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00058 * 163.66203 * 7 2 1 9 9 C 1.41395 * 120.00374 * 343.66520 * 7 2 1 10 10 C 1.40740 * 120.23988 * 334.05174 * 9 7 2 11 11 C 1.37596 * 119.74423 * 180.02562 * 10 9 7 12 12 C 1.38655 * 120.24741 * 359.97438 * 11 10 9 13 13 C 1.38607 * 120.50237 * 359.97438 * 12 11 10 14 14 C 1.37642 * 120.25094 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.12724 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47153 * 264.99457 * 15 14 13 17 17 O 1.20824 * 119.99801 * 0.02562 * 16 15 14 18 18 O 1.34231 * 120.00119 * 180.02562 * 16 15 14 19 19 C 1.45197 * 117.00069 * 179.97438 * 18 16 15 20 20 H 1.09002 * 110.45735 * 330.70304 * 19 18 16 21 21 C 1.54506 * 110.51165 * 208.09660 * 19 18 16 22 22 C 1.54477 * 104.06192 * 241.35682 * 21 19 18 23 23 O 1.44427 * 104.80653 * 23.97896 * 22 21 19 24 24 C 1.44786 * 105.29322 * 319.45256 * 23 22 21 25 25 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.12777 * 359.97438 * 10 9 7 27 27 H 1.07997 * 119.87191 * 180.02562 * 11 10 9 28 28 H 1.07999 * 119.74458 * 179.97438 * 12 11 10 29 29 H 1.08003 * 119.87673 * 179.74040 * 13 12 11 30 30 H 1.08997 * 109.47316 * 25.00205 * 15 14 13 31 31 H 1.09007 * 109.46711 * 144.99581 * 15 14 13 32 32 H 1.08998 * 110.51342 * 0.02562 * 21 19 18 33 33 H 1.08994 * 110.51258 * 122.57956 * 21 19 18 34 34 H 1.09003 * 110.37633 * 142.80787 * 22 21 19 35 35 H 1.09000 * 110.37200 * 265.03672 * 22 21 19 36 36 H 1.08994 * 110.42521 * 281.77575 * 24 23 22 37 37 H 1.09004 * 110.48475 * 159.32201 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6963 -1.2124 5 1 1.2773 2.7465 -0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0553 -1.2309 -0.2626 9 6 1.3439 -2.4116 0.3455 10 6 0.2128 -2.3803 1.1824 11 6 -0.4253 -3.5540 1.5120 12 6 0.0418 -4.7642 1.0224 13 6 1.1542 -4.8069 0.1965 14 6 1.8082 -3.6453 -0.1463 15 6 3.0177 -3.6950 -1.0439 16 6 4.2672 -3.7242 -0.2020 17 8 4.1841 -3.7071 1.0033 18 8 5.4726 -3.7694 -0.7910 19 6 6.6324 -3.7949 0.0821 20 1 6.4173 -3.2765 1.0165 21 6 7.8532 -3.1601 -0.6207 22 6 8.8857 -4.3070 -0.6884 23 8 8.0988 -5.5164 -0.6242 24 6 7.0696 -5.2505 0.3589 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1524 -1.4388 1.5651 27 1 -1.2936 -3.5323 2.1537 28 1 -0.4650 -5.6806 1.2866 29 1 1.5119 -5.7555 -0.1757 30 1 2.9749 -4.5917 -1.6620 31 1 3.0315 -2.8128 -1.6840 32 1 7.5859 -2.8266 -1.6235 33 1 8.2417 -2.3279 -0.0338 34 1 9.4396 -4.2642 -1.6263 35 1 9.5699 -4.2521 0.1583 36 1 7.4743 -5.3400 1.3670 37 1 6.2289 -5.9313 0.2247 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779458237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:02 Heat of formation + Delta-G solvation = -134.062505 kcal Electronic energy + Delta-G solvation = -21218.736684 eV Core-core repulsion = 17924.897772 eV Total energy + Delta-G solvation = -3293.838912 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.71888 -40.08626 -39.23876 -37.15217 -35.53769 -33.65961 -32.53027 -31.39048 -29.99541 -28.72940 -26.97467 -24.39921 -23.07410 -22.84128 -21.89299 -21.07344 -19.11019 -18.82514 -17.83681 -17.59234 -17.23278 -16.65788 -16.51328 -16.28078 -15.79860 -15.42693 -15.38656 -14.40719 -14.20422 -13.95164 -13.70698 -13.39443 -13.37539 -13.21481 -12.94808 -12.78814 -12.74876 -12.54747 -12.51990 -12.13822 -11.94195 -11.70510 -11.38091 -11.36102 -11.25706 -11.05242 -10.76678 -9.26614 -9.23997 -8.63066 -6.34471 0.90581 1.08194 1.32168 1.35181 1.45381 1.52916 1.83973 2.18238 2.75513 2.87211 3.42092 3.63438 3.70607 3.91612 4.00245 4.14265 4.22663 4.31792 4.34191 4.55320 4.55859 4.60353 4.68706 4.75782 4.77259 4.85330 4.94778 5.02008 5.15751 5.33193 5.41529 5.50384 5.71763 5.74221 5.99906 6.11467 6.18726 6.37448 6.68666 6.89889 6.94512 7.06005 8.33272 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.016703 B = 0.005760 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.907660 B = 4859.642877 C = 6239.881691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.038 3.962 3 Si 0.970 3.030 4 H -0.254 1.254 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.487 4.487 8 H 0.070 0.930 9 C 0.099 3.901 10 C -0.191 4.191 11 C -0.112 4.112 12 C -0.241 4.241 13 C -0.085 4.085 14 C -0.202 4.202 15 C -0.043 4.043 16 C 0.466 3.534 17 O -0.528 6.528 18 O -0.352 6.352 19 C 0.038 3.962 20 H 0.089 0.911 21 C -0.148 4.148 22 C 0.044 3.956 23 O -0.392 6.392 24 C 0.037 3.963 25 H 0.288 0.712 26 H 0.099 0.901 27 H 0.108 0.892 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.287 -3.718 -2.382 14.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.177 4.177 3 Si 0.791 3.209 4 H -0.178 1.178 5 H -0.190 1.190 6 H -0.193 1.193 7 C -0.516 4.516 8 H 0.088 0.912 9 C 0.097 3.903 10 C -0.211 4.211 11 C -0.131 4.131 12 C -0.260 4.260 13 C -0.103 4.103 14 C -0.204 4.204 15 C -0.080 4.080 16 C 0.310 3.690 17 O -0.416 6.416 18 O -0.270 6.270 19 C -0.018 4.018 20 H 0.107 0.893 21 C -0.186 4.186 22 C -0.032 4.032 23 O -0.311 6.311 24 C -0.040 4.040 25 H 0.098 0.902 26 H 0.117 0.883 27 H 0.126 0.874 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.124 0.876 32 H 0.110 0.890 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.121 -3.754 -2.157 13.817 hybrid contribution -0.198 1.041 0.521 1.181 sum 12.923 -2.713 -1.636 13.306 Atomic orbital electron populations 1.69862 1.08788 1.30474 1.35664 1.26656 0.95444 1.04168 0.91417 0.85433 0.79063 0.76436 0.79978 1.17841 1.18973 1.19284 1.19610 0.97185 0.92102 1.42718 0.91204 1.17719 0.91435 0.92588 0.88589 1.21310 1.00340 0.96954 1.02457 1.20990 0.99052 0.93304 0.99731 1.20731 1.01489 0.96906 1.06891 1.20760 0.95586 0.96557 0.97414 1.19453 1.00466 0.93893 1.06562 1.20005 0.85662 1.05815 0.96486 1.24398 0.85327 0.70930 0.88345 1.90613 1.87452 1.46076 1.17464 1.86641 1.14835 1.83963 1.41515 1.24379 0.84507 0.98314 0.94562 0.89327 1.23161 0.92263 0.99912 1.03234 1.23673 0.93280 0.81682 1.04539 1.89188 1.44171 1.36837 1.60892 1.23864 0.91802 0.94597 0.93717 0.90175 0.88343 0.87426 0.86430 0.86302 0.85953 0.87577 0.89034 0.87014 0.86697 0.89767 0.88747 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.96 10.97 21.83 0.24 -42.72 16 2 C 0.04 1.94 5.16 85.26 0.44 2.38 16 3 Si 0.97 38.40 29.59 68.60 2.03 40.43 16 4 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 5 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 6 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 7 C -0.49 -25.98 8.14 23.46 0.19 -25.78 16 8 H 0.07 3.63 6.68 -2.91 -0.02 3.61 16 9 C 0.10 5.35 5.56 -21.29 -0.12 5.23 16 10 C -0.19 -10.36 8.68 22.73 0.20 -10.17 16 11 C -0.11 -5.40 10.02 22.22 0.22 -5.18 16 12 C -0.24 -10.68 10.05 22.46 0.23 -10.45 16 13 C -0.09 -3.75 9.66 22.22 0.21 -3.53 16 14 C -0.20 -9.62 4.43 -19.41 -0.09 -9.70 16 15 C -0.04 -1.68 5.29 29.10 0.15 -1.52 16 16 C 0.47 18.55 7.59 71.24 0.54 19.09 16 17 O -0.53 -24.46 15.27 21.97 0.34 -24.13 16 18 O -0.35 -11.91 9.88 -51.42 -0.51 -12.42 16 19 C 0.04 1.04 3.44 31.61 0.11 1.15 16 20 H 0.09 2.66 7.20 -2.39 -0.02 2.64 16 21 C -0.15 -2.92 6.90 31.61 0.22 -2.70 16 22 C 0.04 0.75 7.63 72.48 0.55 1.31 16 23 O -0.39 -9.77 11.66 -148.98 -1.74 -11.51 16 24 C 0.04 0.94 7.41 72.49 0.54 1.47 16 25 H 0.29 13.65 8.30 -92.70 -0.77 12.88 16 26 H 0.10 5.58 6.22 -2.91 -0.02 5.56 16 27 H 0.11 4.57 8.06 -2.91 -0.02 4.54 16 28 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 29 H 0.12 4.38 8.06 -2.91 -0.02 4.35 16 30 H 0.12 3.91 8.05 -2.39 -0.02 3.89 16 31 H 0.11 4.21 7.06 -2.38 -0.02 4.19 16 32 H 0.09 1.86 8.00 -2.39 -0.02 1.84 16 33 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.09 2.36 8.09 -2.38 -0.02 2.34 16 Total: -1.00 -65.21 315.00 4.83 -60.38 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: 1.07 Total: 28.39 kcal Atomic # 6 Polarization: -41.82 SS G_CDS: 3.40 Total: -38.42 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.24 Total: -42.72 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: -1.91 Total: -48.06 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Total: -65.21 4.83 -60.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779458237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.683 kcal (2) G-P(sol) polarization free energy of solvation -65.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds