Wall clock time and date at job start Mon Mar 30 2020 01:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86800 * 119.99948 * 2 1 4 4 H 1.48505 * 109.47363 * 239.99865 * 3 2 1 5 5 H 1.48502 * 109.47369 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47194 * 119.99778 * 3 2 1 7 7 C 1.39945 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00255 * 163.68407 * 7 2 1 9 9 C 1.41401 * 119.99520 * 343.68913 * 7 2 1 10 10 C 1.40730 * 120.24573 * 334.02568 * 9 7 2 11 11 C 1.37592 * 119.74517 * 180.02562 * 10 9 7 12 12 C 1.38660 * 120.25168 * 359.97438 * 11 10 9 13 13 C 1.38610 * 120.49794 * 0.02562 * 12 11 10 14 14 C 1.37642 * 120.25086 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.13082 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47533 * 264.98105 * 15 14 13 17 17 O 1.20827 * 119.99689 * 359.97438 * 16 15 14 18 18 O 1.34229 * 119.99932 * 179.97438 * 16 15 14 19 19 C 1.45203 * 116.99661 * 179.97438 * 18 16 15 20 20 H 1.08997 * 110.75221 * 29.30368 * 19 18 16 21 21 C 1.55305 * 110.84470 * 152.77532 * 19 18 16 22 22 C 1.55208 * 100.82895 * 152.17957 * 21 19 18 23 23 O 1.43647 * 105.25769 * 323.81525 * 22 21 19 24 24 C 1.43242 * 109.96963 * 24.28316 * 23 22 21 25 25 H 0.97001 * 119.99960 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.12631 * 0.05123 * 10 9 7 27 27 H 1.08002 * 119.87354 * 179.72651 * 11 10 9 28 28 H 1.07996 * 119.74784 * 179.97438 * 12 11 10 29 29 H 1.08004 * 119.87617 * 179.97438 * 13 12 11 30 30 H 1.09001 * 109.47157 * 24.98067 * 15 14 13 31 31 H 1.09003 * 109.47177 * 144.97883 * 15 14 13 32 32 H 1.09005 * 111.12291 * 270.24310 * 21 19 18 33 33 H 1.09001 * 111.12669 * 34.40384 * 21 19 18 34 34 H 1.08989 * 110.37134 * 204.79445 * 22 21 19 35 35 H 1.08998 * 110.12511 * 82.70762 * 22 21 19 36 36 H 1.09004 * 109.82944 * 238.77041 * 24 23 22 37 37 H 1.09006 * 109.82793 * 117.80124 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0959 1.6965 1.2126 7 6 2.0080 -1.2119 0.0005 8 1 3.0553 -1.2308 -0.2622 9 6 1.3437 -2.4117 0.3450 10 6 0.2127 -2.3806 1.1819 11 6 -0.4256 -3.5543 1.5109 12 6 0.0413 -4.7644 1.0209 13 6 1.1543 -4.8070 0.1959 14 6 1.8085 -3.6454 -0.1464 15 6 3.0180 -3.6947 -1.0440 16 6 4.2676 -3.7242 -0.2022 17 8 4.1845 -3.7064 1.0031 18 8 5.4728 -3.7701 -0.7914 19 6 6.6327 -3.7958 0.0817 20 1 6.3914 -4.2750 1.0305 21 6 7.8283 -4.5071 -0.6085 22 6 9.0257 -3.8084 0.0893 23 8 8.6105 -2.4463 0.2785 24 6 7.1805 -2.3706 0.3096 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1532 -1.4390 1.5641 27 1 -1.2911 -3.5332 2.1566 28 1 -0.4657 -5.6808 1.2847 29 1 1.5096 -5.7552 -0.1798 30 1 2.9753 -4.5913 -1.6623 31 1 3.0318 -2.8124 -1.6840 32 1 7.8201 -5.5777 -0.4033 33 1 7.8337 -4.3147 -1.6814 34 1 9.9111 -3.8494 -0.5450 35 1 9.2263 -4.2799 1.0513 36 1 6.8280 -1.7080 -0.4810 37 1 6.8509 -1.9985 1.2798 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779458246.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:04 Heat of formation + Delta-G solvation = -118.132682 kcal Electronic energy + Delta-G solvation = -21241.649582 eV Core-core repulsion = 17948.501439 eV Total energy + Delta-G solvation = -3293.148143 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.34617 -38.93206 -37.58165 -35.78824 -33.68815 -32.05409 -31.44501 -29.54041 -29.05580 -27.06328 -25.12911 -22.95202 -22.07292 -21.01653 -20.72545 -19.41120 -17.52509 -17.23893 -16.79937 -16.29768 -15.63768 -15.26724 -15.17328 -14.60954 -14.38165 -13.70329 -13.63493 -13.42125 -12.74113 -12.62012 -12.56144 -12.23745 -11.81384 -11.69104 -11.60550 -11.26062 -11.13081 -11.03927 -10.93160 -10.76328 -10.45846 -10.29435 -9.81744 -9.66245 -9.55769 -9.44914 -9.20777 -7.40772 -7.37797 -6.79758 -4.42175 2.61490 2.83200 2.84779 3.04417 3.07771 3.20424 3.24244 3.78590 3.90148 4.27675 4.60072 4.70295 4.83836 4.87672 5.10616 5.38005 5.46167 5.53981 5.65156 5.70536 5.77236 5.85848 5.92275 6.10932 6.22120 6.35666 6.44831 6.69719 6.78237 6.88680 7.02291 7.22346 7.34666 7.56983 7.84148 7.98173 8.06188 8.23623 8.36649 8.57757 8.83842 8.93357 10.14226 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.015603 B = 0.006097 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.085306 B = 4591.297360 C = 6034.008133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.079 3.921 3 Si 0.903 3.097 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.459 4.459 8 H 0.073 0.927 9 C 0.131 3.869 10 C -0.158 4.158 11 C -0.104 4.104 12 C -0.240 4.240 13 C -0.076 4.076 14 C -0.197 4.197 15 C -0.040 4.040 16 C 0.457 3.543 17 O -0.489 6.489 18 O -0.353 6.353 19 C 0.053 3.947 20 H 0.099 0.901 21 C -0.152 4.152 22 C 0.052 3.948 23 O -0.379 6.379 24 C 0.036 3.964 25 H 0.282 0.718 26 H 0.118 0.882 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.867 -5.128 -2.498 12.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.488 4.488 8 H 0.091 0.909 9 C 0.129 3.871 10 C -0.177 4.177 11 C -0.122 4.122 12 C -0.259 4.259 13 C -0.094 4.094 14 C -0.199 4.199 15 C -0.078 4.078 16 C 0.300 3.700 17 O -0.374 6.374 18 O -0.271 6.271 19 C -0.002 4.002 20 H 0.117 0.883 21 C -0.190 4.190 22 C -0.024 4.024 23 O -0.298 6.298 24 C -0.041 4.041 25 H 0.093 0.907 26 H 0.136 0.864 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.127 0.873 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.788 -4.775 -2.098 11.982 hybrid contribution 0.155 0.575 0.178 0.622 sum 10.943 -4.200 -1.920 11.877 Atomic orbital electron populations 1.69800 1.07501 1.29388 1.34928 1.25877 0.94721 1.01207 0.92157 0.86446 0.80295 0.80408 0.80152 1.18854 1.20194 1.18772 1.19452 0.97180 0.91077 1.41091 0.90876 1.17342 0.90814 0.91161 0.87814 1.21304 0.98865 0.96767 1.00782 1.20707 0.98564 0.93432 0.99507 1.20315 1.01539 0.96262 1.07826 1.20320 0.95843 0.95482 0.97793 1.19039 0.99499 0.94329 1.07026 1.19997 0.86610 1.04291 0.96877 1.24650 0.84357 0.71896 0.89145 1.90641 1.86714 1.43934 1.16071 1.86640 1.14890 1.84764 1.40853 1.24140 0.84638 0.96479 0.94991 0.88268 1.23393 0.92671 1.00781 1.02141 1.23374 0.97067 0.82326 0.99680 1.88437 1.20511 1.26267 1.94602 1.23532 0.80638 0.96758 1.03158 0.90733 0.86418 0.89426 0.89493 0.89562 0.89291 0.87336 0.89060 0.88897 0.89099 0.91823 0.89842 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.07 10.97 55.55 0.61 -19.46 16 2 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 3 Si 0.90 18.67 29.59 -169.99 -5.03 13.64 16 4 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.46 -11.86 8.14 -37.74 -0.31 -12.17 16 8 H 0.07 1.84 6.68 -52.49 -0.35 1.49 16 9 C 0.13 3.44 5.56 -106.82 -0.59 2.84 16 10 C -0.16 -4.13 8.69 -38.88 -0.34 -4.47 16 11 C -0.10 -2.47 10.02 -39.66 -0.40 -2.87 16 12 C -0.24 -5.45 10.05 -39.29 -0.39 -5.84 16 13 C -0.08 -1.71 9.66 -39.66 -0.38 -2.09 16 14 C -0.20 -4.65 4.43 -103.91 -0.46 -5.11 16 15 C -0.04 -0.79 5.29 -29.04 -0.15 -0.95 16 16 C 0.46 9.02 7.59 36.00 0.27 9.29 16 17 O -0.49 -11.19 15.28 -18.75 -0.29 -11.47 16 18 O -0.35 -5.91 9.97 -39.25 -0.39 -6.30 16 19 C 0.05 0.77 3.32 -24.79 -0.08 0.69 16 20 H 0.10 1.50 7.22 -51.93 -0.37 1.12 16 21 C -0.15 -1.60 6.92 -24.34 -0.17 -1.77 16 22 C 0.05 0.53 7.78 38.33 0.30 0.82 16 23 O -0.38 -5.27 11.36 -35.23 -0.40 -5.67 16 24 C 0.04 0.53 7.59 37.88 0.29 0.82 16 25 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 26 H 0.12 3.16 6.22 -52.48 -0.33 2.84 16 27 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 28 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 30 H 0.09 1.46 8.05 -51.93 -0.42 1.04 16 31 H 0.11 2.11 7.06 -51.93 -0.37 1.74 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 0.72 8.14 -51.94 -0.42 0.30 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 1.25 8.06 -51.93 -0.42 0.84 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 315.15 15.07 4.75 4.75 Total: -1.00 -29.24 315.15 -8.03 -37.27 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -4.77 Total: 6.21 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -2.51 Total: -18.96 kcal Atomic # 7 Polarization: -20.07 SS G_CDS: 0.61 Total: -19.46 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -1.08 Total: -23.44 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.24 -8.03 -37.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779458246.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.864 kcal (2) G-P(sol) polarization free energy of solvation -29.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds