Wall clock time and date at job start Mon Mar 30 2020 01:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86800 * 119.99948 * 2 1 4 4 H 1.48505 * 109.47363 * 239.99865 * 3 2 1 5 5 H 1.48502 * 109.47369 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47194 * 119.99778 * 3 2 1 7 7 C 1.39945 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00255 * 163.68407 * 7 2 1 9 9 C 1.41401 * 119.99520 * 343.68913 * 7 2 1 10 10 C 1.40730 * 120.24573 * 334.02568 * 9 7 2 11 11 C 1.37592 * 119.74517 * 180.02562 * 10 9 7 12 12 C 1.38660 * 120.25168 * 359.97438 * 11 10 9 13 13 C 1.38610 * 120.49794 * 0.02562 * 12 11 10 14 14 C 1.37642 * 120.25086 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.13082 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47533 * 264.98105 * 15 14 13 17 17 O 1.20827 * 119.99689 * 359.97438 * 16 15 14 18 18 O 1.34229 * 119.99932 * 179.97438 * 16 15 14 19 19 C 1.45203 * 116.99661 * 179.97438 * 18 16 15 20 20 H 1.08997 * 110.75221 * 29.30368 * 19 18 16 21 21 C 1.55305 * 110.84470 * 152.77532 * 19 18 16 22 22 C 1.55208 * 100.82895 * 152.17957 * 21 19 18 23 23 O 1.43647 * 105.25769 * 323.81525 * 22 21 19 24 24 C 1.43242 * 109.96963 * 24.28316 * 23 22 21 25 25 H 0.97001 * 119.99960 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.12631 * 0.05123 * 10 9 7 27 27 H 1.08002 * 119.87354 * 179.72651 * 11 10 9 28 28 H 1.07996 * 119.74784 * 179.97438 * 12 11 10 29 29 H 1.08004 * 119.87617 * 179.97438 * 13 12 11 30 30 H 1.09001 * 109.47157 * 24.98067 * 15 14 13 31 31 H 1.09003 * 109.47177 * 144.97883 * 15 14 13 32 32 H 1.09005 * 111.12291 * 270.24310 * 21 19 18 33 33 H 1.09001 * 111.12669 * 34.40384 * 21 19 18 34 34 H 1.08989 * 110.37134 * 204.79445 * 22 21 19 35 35 H 1.08998 * 110.12511 * 82.70762 * 22 21 19 36 36 H 1.09004 * 109.82944 * 238.77041 * 24 23 22 37 37 H 1.09006 * 109.82793 * 117.80124 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0959 1.6965 1.2126 7 6 2.0080 -1.2119 0.0005 8 1 3.0553 -1.2308 -0.2622 9 6 1.3437 -2.4117 0.3450 10 6 0.2127 -2.3806 1.1819 11 6 -0.4256 -3.5543 1.5109 12 6 0.0413 -4.7644 1.0209 13 6 1.1543 -4.8070 0.1959 14 6 1.8085 -3.6454 -0.1464 15 6 3.0180 -3.6947 -1.0440 16 6 4.2676 -3.7242 -0.2022 17 8 4.1845 -3.7064 1.0031 18 8 5.4728 -3.7701 -0.7914 19 6 6.6327 -3.7958 0.0817 20 1 6.3914 -4.2750 1.0305 21 6 7.8283 -4.5071 -0.6085 22 6 9.0257 -3.8084 0.0893 23 8 8.6105 -2.4463 0.2785 24 6 7.1805 -2.3706 0.3096 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1532 -1.4390 1.5641 27 1 -1.2911 -3.5332 2.1566 28 1 -0.4657 -5.6808 1.2847 29 1 1.5096 -5.7552 -0.1798 30 1 2.9753 -4.5913 -1.6623 31 1 3.0318 -2.8124 -1.6840 32 1 7.8201 -5.5777 -0.4033 33 1 7.8337 -4.3147 -1.6814 34 1 9.9111 -3.8494 -0.5450 35 1 9.2263 -4.2799 1.0513 36 1 6.8280 -1.7080 -0.4810 37 1 6.8509 -1.9985 1.2798 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779458246.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:04 Heat of formation + Delta-G solvation = -133.864124 kcal Electronic energy + Delta-G solvation = -21242.331748 eV Core-core repulsion = 17948.501439 eV Total energy + Delta-G solvation = -3293.830309 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.73584 -40.16939 -39.28777 -37.26738 -35.54044 -33.67183 -32.57254 -31.39180 -30.13646 -28.73643 -26.97854 -24.14520 -23.16274 -22.84885 -22.11518 -21.09294 -19.11033 -18.91134 -17.95336 -17.57181 -17.28933 -16.76683 -16.47665 -16.19254 -15.69212 -15.41110 -15.34084 -14.42395 -14.40217 -14.01658 -13.74689 -13.66701 -13.40010 -13.38444 -12.95830 -12.78635 -12.77187 -12.57215 -12.53351 -12.14544 -11.92159 -11.61847 -11.38436 -11.36241 -11.25664 -11.05664 -10.67767 -9.26516 -9.24075 -8.63688 -6.34714 0.89340 1.07874 1.29526 1.34910 1.44260 1.52244 1.73799 2.17418 2.74520 2.80296 3.27191 3.57465 3.72622 3.81163 3.93418 4.10501 4.20852 4.30672 4.34327 4.55027 4.55913 4.63976 4.69281 4.76173 4.76590 4.82180 4.94258 5.02765 5.15677 5.33263 5.44204 5.50497 5.73223 5.80254 5.99778 6.11501 6.18950 6.37228 6.68734 6.86428 6.94163 7.06036 8.32518 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.015603 B = 0.006097 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.085306 B = 4591.297360 C = 6034.008133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.040 3.960 3 Si 0.966 3.034 4 H -0.254 1.254 5 H -0.265 1.265 6 H -0.269 1.269 7 C -0.486 4.486 8 H 0.070 0.930 9 C 0.099 3.901 10 C -0.192 4.192 11 C -0.113 4.113 12 C -0.242 4.242 13 C -0.084 4.084 14 C -0.203 4.203 15 C -0.041 4.041 16 C 0.465 3.535 17 O -0.527 6.527 18 O -0.345 6.345 19 C 0.043 3.957 20 H 0.091 0.909 21 C -0.140 4.140 22 C 0.046 3.954 23 O -0.394 6.394 24 C 0.038 3.962 25 H 0.288 0.712 26 H 0.098 0.902 27 H 0.107 0.893 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.128 0.872 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.438 -6.514 -3.501 14.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.175 4.175 3 Si 0.787 3.213 4 H -0.178 1.178 5 H -0.189 1.189 6 H -0.194 1.194 7 C -0.516 4.516 8 H 0.088 0.912 9 C 0.097 3.903 10 C -0.211 4.211 11 C -0.131 4.131 12 C -0.261 4.261 13 C -0.102 4.102 14 C -0.205 4.205 15 C -0.078 4.078 16 C 0.310 3.690 17 O -0.415 6.415 18 O -0.262 6.262 19 C -0.012 4.012 20 H 0.109 0.891 21 C -0.177 4.177 22 C -0.029 4.029 23 O -0.314 6.314 24 C -0.039 4.039 25 H 0.098 0.902 26 H 0.116 0.884 27 H 0.125 0.875 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.145 0.855 31 H 0.125 0.875 32 H 0.134 0.866 33 H 0.118 0.882 34 H 0.137 0.863 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.371 -6.179 -3.125 14.177 hybrid contribution -0.288 0.870 0.499 1.044 sum 12.082 -5.309 -2.626 13.456 Atomic orbital electron populations 1.69855 1.08716 1.30440 1.35687 1.26611 0.95414 1.04037 0.91465 0.85495 0.79125 0.76704 0.79986 1.17835 1.18901 1.19438 1.19606 0.97164 0.92088 1.42694 0.91201 1.17720 0.91423 0.92625 0.88566 1.21309 1.00363 0.96957 1.02501 1.20991 0.99054 0.93344 0.99706 1.20741 1.01503 0.96859 1.06957 1.20770 0.95492 0.96602 0.97319 1.19463 1.00533 0.93841 1.06631 1.20018 0.85312 1.06080 0.96407 1.24506 0.85246 0.70886 0.88397 1.90631 1.87382 1.45895 1.17615 1.86605 1.14653 1.84091 1.40867 1.24437 0.84750 0.96945 0.95105 0.89138 1.23444 0.90273 1.01819 1.02139 1.23695 0.97692 0.80447 1.01100 1.88420 1.19521 1.28757 1.94741 1.23390 0.81552 0.96910 1.02091 0.90181 0.88424 0.87500 0.86402 0.86060 0.85460 0.87486 0.86593 0.88200 0.86326 0.90447 0.90647 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.98 10.97 21.83 0.24 -42.74 16 2 C 0.04 2.03 5.16 85.26 0.44 2.47 16 3 Si 0.97 38.93 29.59 68.60 2.03 40.96 16 4 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 5 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 6 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 7 C -0.49 -25.91 8.14 23.46 0.19 -25.72 16 8 H 0.07 3.62 6.68 -2.91 -0.02 3.60 16 9 C 0.10 5.31 5.56 -21.29 -0.12 5.19 16 10 C -0.19 -10.37 8.69 22.73 0.20 -10.17 16 11 C -0.11 -5.38 10.02 22.22 0.22 -5.16 16 12 C -0.24 -10.56 10.05 22.46 0.23 -10.33 16 13 C -0.08 -3.61 9.66 22.22 0.21 -3.40 16 14 C -0.20 -9.49 4.43 -19.40 -0.09 -9.58 16 15 C -0.04 -1.57 5.29 29.10 0.15 -1.41 16 16 C 0.47 18.05 7.59 71.24 0.54 18.59 16 17 O -0.53 -24.29 15.28 21.96 0.34 -23.96 16 18 O -0.34 -11.09 9.97 -51.40 -0.51 -11.60 16 19 C 0.04 1.19 3.32 31.85 0.11 1.30 16 20 H 0.09 2.68 7.22 -2.39 -0.02 2.66 16 21 C -0.14 -2.52 6.92 32.14 0.22 -2.29 16 22 C 0.05 0.80 7.78 72.74 0.57 1.37 16 23 O -0.39 -10.43 11.36 -148.98 -1.69 -12.13 16 24 C 0.04 1.10 7.59 72.45 0.55 1.65 16 25 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 26 H 0.10 5.54 6.22 -2.91 -0.02 5.52 16 27 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 28 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 29 H 0.12 4.30 8.06 -2.91 -0.02 4.27 16 30 H 0.13 3.79 8.05 -2.39 -0.02 3.77 16 31 H 0.11 4.12 7.06 -2.39 -0.02 4.10 16 32 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 2.28 8.06 -2.38 -0.02 2.26 16 37 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -64.81 315.15 4.90 -59.91 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 1.07 Total: 27.05 kcal Atomic # 6 Polarization: -40.93 SS G_CDS: 3.43 Total: -37.50 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 0.24 Total: -42.74 kcal Atomic # 8 Polarization: -45.81 SS G_CDS: -1.87 Total: -47.68 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Total: -64.81 4.90 -59.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779458246.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.952 kcal (2) G-P(sol) polarization free energy of solvation -64.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds