Wall clock time and date at job start Mon Mar 30 2020 01:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 113.08209 * 2 1 4 4 O 1.20819 * 120.00218 * 228.09237 * 3 2 1 5 5 O 1.34232 * 119.99612 * 48.09290 * 3 2 1 6 6 C 1.45203 * 116.99881 * 179.97438 * 5 3 2 7 7 C 1.50686 * 109.47313 * 180.02562 * 6 5 3 8 8 C 1.38640 * 119.75222 * 269.72835 * 7 6 5 9 9 C 1.37616 * 120.24668 * 179.71901 * 8 7 6 10 10 C 1.40715 * 119.75013 * 0.57524 * 9 8 7 11 11 C 1.41393 * 120.24633 * 179.68367 * 10 9 8 12 12 H 1.07998 * 120.00506 * 24.39793 * 11 10 9 13 13 C 1.39945 * 119.99705 * 204.40753 * 11 10 9 14 14 N 1.30827 * 120.00397 * 17.85597 * 13 11 10 15 15 Si 1.86801 * 119.99947 * 197.86686 * 13 11 10 16 16 H 1.48502 * 109.47137 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47481 * 119.99514 * 15 13 11 18 18 H 1.48504 * 109.47186 * 239.99736 * 15 13 11 19 19 C 1.40718 * 119.50636 * 359.69838 * 10 9 8 20 20 C 1.37617 * 119.74681 * 0.02562 * 19 10 9 21 21 C 1.54031 * 113.81832 * 228.09811 * 2 1 3 22 22 O 1.44181 * 85.66231 * 268.28982 * 21 2 1 23 23 C 1.44443 * 93.22507 * 335.92582 * 22 21 2 24 24 H 1.08996 * 109.47305 * 191.90018 * 1 2 3 25 25 H 1.09000 * 109.47390 * 311.90719 * 1 2 3 26 26 H 1.09003 * 109.46919 * 71.90089 * 1 2 3 27 27 H 1.09005 * 109.47252 * 300.00598 * 6 5 3 28 28 H 1.09002 * 109.46930 * 59.99982 * 6 5 3 29 29 H 1.07995 * 119.87499 * 359.97438 * 8 7 6 30 30 H 1.08007 * 120.12422 * 180.27824 * 9 8 7 31 31 H 0.96996 * 120.00248 * 180.02562 * 14 13 11 32 32 H 1.08007 * 120.12275 * 179.97438 * 19 10 9 33 33 H 1.08001 * 119.87227 * 179.97438 * 20 19 10 34 34 H 1.09004 * 113.86648 * 22.49683 * 21 2 1 35 35 H 1.08999 * 113.87047 * 154.08062 * 21 2 1 36 36 H 1.09000 * 113.75182 * 269.91767 * 23 22 21 37 37 H 1.08997 * 114.05741 * 138.27140 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1208 1.3864 0.0000 4 8 3.0006 1.6682 -0.7787 5 8 1.6696 2.3082 0.8652 6 6 2.2852 3.6221 0.8091 7 6 1.6557 4.5164 1.8457 8 6 0.5477 5.2807 1.5137 9 6 -0.0387 6.0965 2.4541 10 6 0.4978 6.1624 3.7533 11 6 -0.0923 7.0022 4.7258 12 1 -1.1317 7.2822 4.6385 13 6 0.6706 7.4707 5.8014 14 7 1.9770 7.4377 5.7403 15 14 -0.1765 8.1430 7.3245 16 1 -1.6488 8.0714 7.1445 17 1 0.2178 7.3361 8.5072 18 1 0.2281 9.5566 7.5327 19 6 1.6261 5.3865 4.0774 20 6 2.1927 4.5733 3.1226 21 6 2.1520 -0.9411 -1.0488 22 8 2.1472 -1.9325 -0.0019 23 6 2.1520 -0.9412 1.0487 24 1 -0.3634 -1.0055 0.2119 25 1 -0.3634 0.6864 0.7648 26 1 -0.3633 0.3193 -0.9769 27 1 3.3531 3.5318 1.0077 28 1 2.1349 4.0517 -0.1814 29 1 0.1408 5.2325 0.5145 30 1 -0.9045 6.6877 2.1945 31 1 2.5057 7.7621 6.4860 32 1 2.0463 5.4297 5.0714 33 1 3.0590 3.9772 3.3690 34 1 1.4876 -1.1751 -1.8806 35 1 3.1503 -0.6445 -1.3706 36 1 3.1511 -0.6458 1.3691 37 1 1.4884 -1.1734 1.8816 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782425778.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:51 Heat of formation + Delta-G solvation = -87.392430 kcal Electronic energy + Delta-G solvation = -20552.126762 eV Core-core repulsion = 17260.311617 eV Total energy + Delta-G solvation = -3291.815145 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.36888 -39.45774 -37.68614 -36.10230 -33.91870 -32.49250 -30.76241 -29.41034 -27.34498 -26.84635 -26.57798 -24.23834 -22.63475 -21.12915 -20.10040 -19.32643 -17.71973 -17.43097 -16.93216 -16.48843 -16.02076 -15.65408 -15.35233 -14.71293 -14.01519 -13.89238 -13.67787 -13.47485 -12.72579 -12.71201 -12.49999 -12.33490 -12.20241 -12.07272 -11.60601 -11.53945 -11.31433 -11.17389 -11.08974 -10.68619 -10.62412 -10.23516 -10.21861 -9.90350 -9.70389 -9.50949 -9.25373 -7.60494 -7.49783 -6.90767 -4.50000 2.21851 2.38080 2.89524 2.96990 3.00909 3.05972 3.27819 3.34351 3.83018 3.83472 4.45352 4.54541 4.76690 4.94800 5.09042 5.24085 5.49091 5.51614 5.52224 5.56699 5.61590 5.66504 5.71879 5.80330 5.96657 6.06243 6.20882 6.27042 6.74591 6.83546 6.94033 7.14123 7.22450 7.47711 7.69494 7.92335 7.93484 7.96925 8.15386 8.50264 8.75007 8.82875 10.03257 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.034755 B = 0.003343 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.455921 B = 8374.515811 C = 8512.055298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.131 4.131 3 C 0.464 3.536 4 O -0.516 6.516 5 O -0.344 6.344 6 C 0.134 3.866 7 C -0.237 4.237 8 C -0.063 4.063 9 C -0.230 4.230 10 C 0.119 3.881 11 C -0.456 4.456 12 H 0.081 0.919 13 C 0.075 3.925 14 N -0.785 5.785 15 Si 0.910 3.090 16 H -0.259 1.259 17 H -0.270 1.270 18 H -0.273 1.273 19 C -0.171 4.171 20 C -0.075 4.075 21 C 0.059 3.941 22 O -0.374 6.374 23 C 0.059 3.941 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.283 0.717 32 H 0.120 0.880 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.962 -11.022 -6.142 12.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.133 4.133 3 C 0.307 3.693 4 O -0.406 6.406 5 O -0.260 6.260 6 C 0.063 3.937 7 C -0.238 4.238 8 C -0.082 4.082 9 C -0.250 4.250 10 C 0.116 3.884 11 C -0.484 4.484 12 H 0.099 0.901 13 C -0.144 4.144 14 N -0.410 5.410 15 Si 0.734 3.266 16 H -0.183 1.183 17 H -0.195 1.195 18 H -0.199 1.199 19 C -0.190 4.190 20 C -0.094 4.094 21 C -0.017 4.017 22 O -0.293 6.293 23 C -0.017 4.017 24 H 0.094 0.906 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.138 0.862 33 H 0.106 0.894 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.487 -11.085 -6.220 12.720 hybrid contribution -0.089 0.780 0.612 0.996 sum -0.576 -10.305 -5.607 11.746 Atomic orbital electron populations 1.21603 0.89262 1.03845 1.03842 1.23871 0.99940 0.89765 0.99690 1.23388 0.80449 0.87337 0.78172 1.90624 1.30042 1.80794 1.39105 1.86718 1.61069 1.23193 1.55019 1.21757 0.95771 0.77595 0.98617 1.18641 1.03729 1.05976 0.95495 1.20380 0.94447 0.96061 0.97272 1.20949 1.04168 1.05918 0.93953 1.17692 0.90636 0.89207 0.90834 1.19717 0.98135 1.25256 1.05341 0.90095 1.25980 0.94594 0.94116 0.99686 1.69828 1.06005 1.34055 1.31087 0.86232 0.80899 0.78821 0.80660 1.18253 1.19545 1.19870 1.21301 0.99885 0.98723 0.99071 1.20533 0.98034 0.98007 0.92802 1.24078 1.01676 0.84261 0.91699 1.89749 1.95812 1.26982 1.16780 1.24037 1.01015 0.84701 0.91989 0.90579 0.89909 0.91363 0.91999 0.92051 0.89329 0.88696 0.90647 0.86233 0.89350 0.88209 0.88531 0.89499 0.87470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 9.11 37.16 0.34 -0.96 16 2 C -0.13 -1.55 1.38 -154.58 -0.21 -1.77 16 3 C 0.46 7.17 7.06 36.01 0.25 7.43 16 4 O -0.52 -9.02 15.64 -18.74 -0.29 -9.31 16 5 O -0.34 -6.04 9.81 -39.26 -0.39 -6.42 16 6 C 0.13 2.51 5.58 36.00 0.20 2.71 16 7 C -0.24 -5.14 5.54 -104.33 -0.58 -5.72 16 8 C -0.06 -1.39 9.67 -39.66 -0.38 -1.77 16 9 C -0.23 -5.50 9.80 -38.87 -0.38 -5.88 16 10 C 0.12 3.08 5.58 -106.82 -0.60 2.48 16 11 C -0.46 -11.66 9.05 -37.74 -0.34 -12.00 16 12 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 13 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 14 N -0.79 -19.55 10.95 55.55 0.61 -18.94 16 15 Si 0.91 17.88 29.60 -169.99 -5.03 12.85 16 16 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 17 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 18 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 19 C -0.17 -4.30 8.70 -38.87 -0.34 -4.64 16 20 C -0.08 -1.72 9.67 -39.66 -0.38 -2.10 16 21 C 0.06 0.64 8.14 37.61 0.31 0.95 16 22 O -0.37 -4.45 12.41 -35.23 -0.44 -4.88 16 23 C 0.06 0.64 8.31 37.61 0.31 0.96 16 24 H 0.08 0.66 8.04 -51.93 -0.42 0.24 16 25 H 0.08 0.92 7.84 -51.93 -0.41 0.52 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 28 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 29 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 31 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 32 H 0.12 3.10 6.16 -52.48 -0.32 2.78 16 33 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.10 0.86 8.10 -51.93 -0.42 0.44 16 35 H 0.10 1.08 7.40 -51.93 -0.38 0.70 16 36 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 37 H 0.11 0.98 8.10 -51.93 -0.42 0.56 16 LS Contribution 320.84 15.07 4.84 4.84 Total: -1.00 -28.06 320.84 -7.47 -35.52 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -4.87 Total: 4.93 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -1.89 Total: -18.59 kcal Atomic # 7 Polarization: -19.55 SS G_CDS: 0.61 Total: -18.94 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -1.12 Total: -20.61 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.06 -7.47 -35.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782425778.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.869 kcal (2) G-P(sol) polarization free energy of solvation -28.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds