Wall clock time and date at job start Mon Mar 30 2020 01:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 113.08209 * 2 1 4 4 O 1.20819 * 120.00218 * 228.09237 * 3 2 1 5 5 O 1.34232 * 119.99612 * 48.09290 * 3 2 1 6 6 C 1.45203 * 116.99881 * 179.97438 * 5 3 2 7 7 C 1.50686 * 109.47313 * 180.02562 * 6 5 3 8 8 C 1.38640 * 119.75222 * 269.72835 * 7 6 5 9 9 C 1.37616 * 120.24668 * 179.71901 * 8 7 6 10 10 C 1.40715 * 119.75013 * 0.57524 * 9 8 7 11 11 C 1.41393 * 120.24633 * 179.68367 * 10 9 8 12 12 H 1.07998 * 120.00506 * 24.39793 * 11 10 9 13 13 C 1.39945 * 119.99705 * 204.40753 * 11 10 9 14 14 N 1.30827 * 120.00397 * 17.85597 * 13 11 10 15 15 Si 1.86801 * 119.99947 * 197.86686 * 13 11 10 16 16 H 1.48502 * 109.47137 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47481 * 119.99514 * 15 13 11 18 18 H 1.48504 * 109.47186 * 239.99736 * 15 13 11 19 19 C 1.40718 * 119.50636 * 359.69838 * 10 9 8 20 20 C 1.37617 * 119.74681 * 0.02562 * 19 10 9 21 21 C 1.54031 * 113.81832 * 228.09811 * 2 1 3 22 22 O 1.44181 * 85.66231 * 268.28982 * 21 2 1 23 23 C 1.44443 * 93.22507 * 335.92582 * 22 21 2 24 24 H 1.08996 * 109.47305 * 191.90018 * 1 2 3 25 25 H 1.09000 * 109.47390 * 311.90719 * 1 2 3 26 26 H 1.09003 * 109.46919 * 71.90089 * 1 2 3 27 27 H 1.09005 * 109.47252 * 300.00598 * 6 5 3 28 28 H 1.09002 * 109.46930 * 59.99982 * 6 5 3 29 29 H 1.07995 * 119.87499 * 359.97438 * 8 7 6 30 30 H 1.08007 * 120.12422 * 180.27824 * 9 8 7 31 31 H 0.96996 * 120.00248 * 180.02562 * 14 13 11 32 32 H 1.08007 * 120.12275 * 179.97438 * 19 10 9 33 33 H 1.08001 * 119.87227 * 179.97438 * 20 19 10 34 34 H 1.09004 * 113.86648 * 22.49683 * 21 2 1 35 35 H 1.08999 * 113.87047 * 154.08062 * 21 2 1 36 36 H 1.09000 * 113.75182 * 269.91767 * 23 22 21 37 37 H 1.08997 * 114.05741 * 138.27140 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1208 1.3864 0.0000 4 8 3.0006 1.6682 -0.7787 5 8 1.6696 2.3082 0.8652 6 6 2.2852 3.6221 0.8091 7 6 1.6557 4.5164 1.8457 8 6 0.5477 5.2807 1.5137 9 6 -0.0387 6.0965 2.4541 10 6 0.4978 6.1624 3.7533 11 6 -0.0923 7.0022 4.7258 12 1 -1.1317 7.2822 4.6385 13 6 0.6706 7.4707 5.8014 14 7 1.9770 7.4377 5.7403 15 14 -0.1765 8.1430 7.3245 16 1 -1.6488 8.0714 7.1445 17 1 0.2178 7.3361 8.5072 18 1 0.2281 9.5566 7.5327 19 6 1.6261 5.3865 4.0774 20 6 2.1927 4.5733 3.1226 21 6 2.1520 -0.9411 -1.0488 22 8 2.1472 -1.9325 -0.0019 23 6 2.1520 -0.9412 1.0487 24 1 -0.3634 -1.0055 0.2119 25 1 -0.3634 0.6864 0.7648 26 1 -0.3633 0.3193 -0.9769 27 1 3.3531 3.5318 1.0077 28 1 2.1349 4.0517 -0.1814 29 1 0.1408 5.2325 0.5145 30 1 -0.9045 6.6877 2.1945 31 1 2.5057 7.7621 6.4860 32 1 2.0463 5.4297 5.0714 33 1 3.0590 3.9772 3.3690 34 1 1.4876 -1.1751 -1.8806 35 1 3.1503 -0.6445 -1.3706 36 1 3.1511 -0.6458 1.3691 37 1 1.4884 -1.1734 1.8816 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782425778.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:50 Heat of formation + Delta-G solvation = -101.864711 kcal Electronic energy + Delta-G solvation = -20552.754327 eV Core-core repulsion = 17260.311617 eV Total energy + Delta-G solvation = -3292.442711 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.40274 -40.67216 -39.43499 -37.51100 -35.70150 -33.47652 -32.46588 -31.24143 -29.00959 -27.70818 -27.43105 -25.86291 -23.93118 -22.96356 -21.85748 -20.42082 -19.28188 -18.78346 -18.20365 -17.62803 -17.20841 -16.93163 -16.64854 -16.24845 -15.69945 -15.45567 -14.89722 -14.62549 -14.30793 -13.99530 -13.86892 -13.68052 -13.45320 -13.23276 -13.09852 -13.02784 -12.79931 -12.56586 -12.42608 -12.21234 -11.94087 -11.71000 -11.55818 -11.34691 -11.27986 -11.04475 -10.80294 -9.45002 -9.34814 -8.70265 -6.40594 0.70834 1.01347 1.10029 1.38511 1.42163 1.54330 1.85739 2.19235 2.46564 2.69843 2.93094 3.57085 3.69874 3.78782 3.96925 4.05994 4.08194 4.24869 4.46296 4.46643 4.48948 4.53688 4.70540 4.72642 4.75013 4.89844 4.95780 4.99591 5.11140 5.21266 5.29084 5.37881 5.44395 5.63931 5.86995 6.04781 6.12850 6.30904 6.63282 6.64630 6.87703 6.96009 8.26752 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.034755 B = 0.003343 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.455921 B = 8374.515811 C = 8512.055298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.131 4.131 3 C 0.465 3.535 4 O -0.537 6.537 5 O -0.352 6.352 6 C 0.140 3.860 7 C -0.231 4.231 8 C -0.065 4.065 9 C -0.245 4.245 10 C 0.089 3.911 11 C -0.493 4.493 12 H 0.080 0.920 13 C 0.036 3.964 14 N -0.818 5.818 15 Si 0.984 3.016 16 H -0.257 1.257 17 H -0.263 1.263 18 H -0.265 1.265 19 C -0.193 4.193 20 C -0.080 4.080 21 C 0.062 3.938 22 O -0.384 6.384 23 C 0.058 3.942 24 H 0.094 0.906 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.103 0.897 31 H 0.291 0.709 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.125 0.875 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.549 -12.151 -6.680 13.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.132 4.132 3 C 0.309 3.691 4 O -0.427 6.427 5 O -0.268 6.268 6 C 0.067 3.933 7 C -0.232 4.232 8 C -0.083 4.083 9 C -0.264 4.264 10 C 0.086 3.914 11 C -0.522 4.522 12 H 0.098 0.902 13 C -0.180 4.180 14 N -0.443 5.443 15 Si 0.805 3.195 16 H -0.180 1.180 17 H -0.188 1.188 18 H -0.190 1.190 19 C -0.213 4.213 20 C -0.099 4.099 21 C -0.014 4.014 22 O -0.303 6.303 23 C -0.018 4.018 24 H 0.113 0.887 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.136 0.864 30 H 0.121 0.879 31 H 0.101 0.899 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.143 0.857 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.071 -12.231 -6.776 14.023 hybrid contribution 0.164 1.023 0.630 1.212 sum -0.907 -11.208 -6.146 12.815 Atomic orbital electron populations 1.21624 0.87770 1.04727 1.04074 1.24100 1.01040 0.87141 1.00964 1.24118 0.79965 0.87970 0.77040 1.90617 1.31051 1.81262 1.39810 1.86685 1.61234 1.22922 1.55969 1.21561 0.95676 0.78059 0.97977 1.18954 1.02984 1.05739 0.95507 1.20698 0.94236 0.95127 0.98213 1.21164 1.04766 1.06688 0.93829 1.18041 0.91424 0.89949 0.91969 1.19959 0.98442 1.26741 1.07024 0.90225 1.26818 0.95062 0.93952 1.02189 1.69870 1.07331 1.34858 1.32289 0.85127 0.79615 0.78323 0.76485 1.18021 1.18796 1.19022 1.21270 1.00722 1.00155 0.99135 1.20770 0.98449 0.97585 0.93051 1.24187 1.01799 0.83380 0.92018 1.89749 1.95836 1.27405 1.17299 1.24187 1.01392 0.83989 0.92243 0.88720 0.91096 0.90390 0.91549 0.90994 0.86416 0.87916 0.89862 0.87800 0.87595 0.85732 0.89271 0.89626 0.85620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 9.11 71.98 0.66 -1.53 16 2 C -0.13 -2.80 1.38 -52.23 -0.07 -2.87 16 3 C 0.46 13.54 7.06 71.24 0.50 14.05 16 4 O -0.54 -17.92 15.64 21.98 0.34 -17.57 16 5 O -0.35 -11.74 9.81 -51.44 -0.50 -12.24 16 6 C 0.14 4.98 5.58 71.23 0.40 5.38 16 7 C -0.23 -9.77 5.54 -19.68 -0.11 -9.88 16 8 C -0.06 -2.78 9.67 22.22 0.21 -2.56 16 9 C -0.25 -11.78 9.80 22.73 0.22 -11.56 16 10 C 0.09 4.71 5.58 -21.29 -0.12 4.59 16 11 C -0.49 -25.97 9.05 23.46 0.21 -25.75 16 12 H 0.08 4.03 7.91 -2.91 -0.02 4.01 16 13 C 0.04 1.76 5.14 85.26 0.44 2.19 16 14 N -0.82 -41.72 10.95 21.83 0.24 -41.48 16 15 Si 0.98 36.90 29.60 68.60 2.03 38.93 16 16 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 17 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 18 H -0.27 -9.53 7.11 99.48 0.71 -8.83 16 19 C -0.19 -10.03 8.70 22.73 0.20 -9.83 16 20 C -0.08 -3.67 9.67 22.22 0.21 -3.46 16 21 C 0.06 1.19 8.14 72.27 0.59 1.78 16 22 O -0.38 -8.18 12.41 -148.98 -1.85 -10.03 16 23 C 0.06 1.14 8.31 72.27 0.60 1.74 16 24 H 0.09 1.33 8.04 -2.39 -0.02 1.31 16 25 H 0.07 1.43 7.84 -2.39 -0.02 1.41 16 26 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.07 2.31 8.07 -2.38 -0.02 2.29 16 28 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 29 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 30 H 0.10 4.63 8.06 -2.91 -0.02 4.60 16 31 H 0.29 13.28 8.30 -92.71 -0.77 12.51 16 32 H 0.10 5.62 6.16 -2.91 -0.02 5.60 16 33 H 0.11 4.36 8.06 -2.91 -0.02 4.34 16 34 H 0.12 1.74 8.10 -2.38 -0.02 1.72 16 35 H 0.09 1.85 7.40 -2.39 -0.02 1.83 16 36 H 0.09 1.68 8.09 -2.39 -0.02 1.66 16 37 H 0.13 1.97 8.10 -2.39 -0.02 1.95 16 Total: -1.00 -60.61 320.84 5.27 -55.34 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 1.07 Total: 24.78 kcal Atomic # 6 Polarization: -41.67 SS G_CDS: 3.95 Total: -37.73 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.24 Total: -41.48 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -2.01 Total: -39.84 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.93 kcal Total: -60.61 5.27 -55.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782425778.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.526 kcal (2) G-P(sol) polarization free energy of solvation -60.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds