Wall clock time and date at job start Mon Mar 30 2020 01:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86795 * 120.00217 * 2 1 4 4 H 1.48494 * 109.47279 * 239.99846 * 3 2 1 5 5 H 1.48501 * 109.47201 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47103 * 119.99719 * 3 2 1 7 7 C 1.39950 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00184 * 197.85672 * 7 2 1 9 9 C 1.41389 * 119.99858 * 17.86082 * 7 2 1 10 10 C 1.40715 * 120.24812 * 24.38476 * 9 7 2 11 11 C 1.37618 * 119.74825 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.24837 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.74935 * 179.97438 * 12 11 10 14 14 O 1.45193 * 109.47204 * 90.00091 * 13 12 11 15 15 C 1.34227 * 117.00578 * 179.97438 * 14 13 12 16 16 O 1.20833 * 119.99398 * 0.02562 * 15 14 13 17 17 C 1.50691 * 120.00604 * 180.27501 * 15 14 13 18 18 O 1.42905 * 112.84867 * 25.05951 * 17 15 14 19 19 C 1.53785 * 113.61711 * 253.86504 * 17 15 14 20 20 C 1.53959 * 87.02047 * 220.04594 * 19 17 15 21 21 C 1.53783 * 113.61729 * 156.25631 * 17 15 14 22 22 C 1.38632 * 120.49840 * 0.25214 * 12 11 10 23 23 C 1.37613 * 120.24992 * 359.44798 * 22 12 11 24 24 H 0.96998 * 119.99561 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.12480 * 0.02562 * 10 9 7 26 26 H 1.07999 * 119.87323 * 179.97438 * 11 10 9 27 27 H 1.09000 * 109.47491 * 330.00043 * 13 12 11 28 28 H 1.08997 * 109.47202 * 210.00513 * 13 12 11 29 29 H 0.96696 * 113.99785 * 309.67049 * 18 17 15 30 30 H 1.08996 * 113.61118 * 334.56779 * 19 17 15 31 31 H 1.08998 * 113.61149 * 105.46889 * 19 17 15 32 32 H 1.09002 * 113.53405 * 270.81427 * 20 19 17 33 33 H 1.09000 * 113.73999 * 139.94497 * 20 19 17 34 34 H 1.08997 * 113.61507 * 254.52849 * 21 17 15 35 35 H 1.09001 * 113.61257 * 25.34696 * 21 17 15 36 36 H 1.08003 * 119.87103 * 179.70017 * 22 12 11 37 37 H 1.08000 * 120.13103 * 180.27612 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2124 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6963 1.2126 7 6 2.0080 -1.2120 0.0005 8 1 3.0490 -1.2345 0.2873 9 6 1.3521 -2.4071 -0.3745 10 6 0.2209 -2.3626 -1.2102 11 6 -0.4099 -3.5321 -1.5684 12 6 0.0648 -4.7508 -1.1086 13 6 -0.6349 -6.0245 -1.5074 14 8 -0.0509 -6.5335 -2.7354 15 6 -0.5645 -7.6713 -3.2286 16 8 -1.4725 -8.2235 -2.6534 17 6 -0.0052 -8.2632 -4.4965 18 8 1.3501 -7.8792 -4.7374 19 6 -0.9227 -8.0833 -5.7175 20 6 -0.5340 -9.5175 -6.1202 21 6 -0.2501 -9.7754 -4.6309 22 6 1.1750 -4.8061 -0.2801 23 6 1.8252 -3.6498 0.0858 24 1 -0.4849 0.8401 -0.0004 25 1 -0.1509 -1.4143 -1.5692 26 1 -1.2785 -3.5003 -2.2094 27 1 -1.6944 -5.8229 -1.6653 28 1 -0.5201 -6.7652 -0.7161 29 1 1.5056 -6.9267 -4.6773 30 1 -1.9758 -7.9724 -5.4596 31 1 -0.5747 -7.3230 -6.4168 32 1 0.3549 -9.5673 -6.7491 33 1 -1.3647 -10.1031 -6.5141 34 1 0.6400 -10.3793 -4.4544 35 1 -1.1182 -10.1283 -4.0742 36 1 1.5333 -5.7607 0.0761 37 1 2.6925 -3.6955 0.7277 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785221285.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:26 Heat of formation + Delta-G solvation = -102.220990 kcal Electronic energy + Delta-G solvation = -20537.604414 eV Core-core repulsion = 17245.146254 eV Total energy + Delta-G solvation = -3292.458160 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.83954 -38.75520 -37.61623 -36.20336 -34.71974 -33.88652 -30.85945 -29.40709 -27.67441 -26.28190 -26.05422 -23.83594 -21.60128 -21.11998 -20.09325 -19.79060 -18.25850 -17.42270 -16.91718 -16.27748 -15.75371 -15.38469 -15.22277 -14.68563 -14.09857 -13.89861 -13.72922 -13.07056 -12.73905 -12.72895 -12.44868 -12.18803 -12.06568 -11.70587 -11.57492 -11.30320 -11.26246 -11.17104 -11.14128 -10.67473 -10.66134 -10.43347 -10.21949 -9.87294 -9.66779 -9.49725 -9.24014 -7.59991 -7.49229 -6.90164 -4.49580 2.21762 2.37936 2.91892 2.97734 3.00271 3.03154 3.29360 3.79849 3.83242 4.25555 4.32504 4.45663 4.51074 4.81287 5.24508 5.42501 5.48003 5.57280 5.61949 5.63132 5.64924 5.70179 5.77157 6.03141 6.09372 6.21987 6.27744 6.74138 6.84265 6.94482 7.14705 7.23059 7.36036 7.48170 7.70281 7.92416 7.94314 7.97522 8.15953 8.50409 8.75320 8.83386 10.03831 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.036725 B = 0.003322 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.234866 B = 8427.047326 C = 8557.887946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.076 3.924 3 Si 0.911 3.089 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.456 4.456 8 H 0.080 0.920 9 C 0.120 3.880 10 C -0.171 4.171 11 C -0.075 4.075 12 C -0.238 4.238 13 C 0.136 3.864 14 O -0.351 6.351 15 C 0.441 3.559 16 O -0.512 6.512 17 C 0.114 3.886 18 O -0.528 6.528 19 C -0.152 4.152 20 C -0.130 4.130 21 C -0.114 4.114 22 C -0.063 4.063 23 C -0.230 4.230 24 H 0.284 0.716 25 H 0.120 0.880 26 H 0.088 0.912 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.396 0.604 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.205 -10.311 -9.152 13.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.485 4.485 8 H 0.098 0.902 9 C 0.117 3.883 10 C -0.190 4.190 11 C -0.094 4.094 12 C -0.239 4.239 13 C 0.064 3.936 14 O -0.267 6.267 15 C 0.283 3.717 16 O -0.401 6.401 17 C 0.071 3.929 18 O -0.336 6.336 19 C -0.190 4.190 20 C -0.168 4.168 21 C -0.151 4.151 22 C -0.081 4.081 23 C -0.250 4.250 24 H 0.095 0.905 25 H 0.138 0.862 26 H 0.106 0.894 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.246 0.754 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.126 0.874 36 H 0.107 0.893 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.610 -10.895 -8.989 14.216 hybrid contribution 0.118 1.470 0.377 1.522 sum -1.492 -9.425 -8.612 12.854 Atomic orbital electron populations 1.69816 1.07700 1.29680 1.33805 1.25979 0.94770 1.01570 0.92043 0.86315 0.80161 0.79869 0.80143 1.18648 1.20221 1.18869 1.19659 0.98283 0.91263 1.39304 0.90152 1.17682 0.90767 0.92061 0.87808 1.21295 0.99457 0.96718 1.01526 1.20527 0.98080 0.92551 0.98240 1.18644 1.03515 0.91412 1.10357 1.21747 0.95976 0.93969 0.81893 1.86662 1.59928 1.37730 1.42376 1.24352 0.81157 0.79671 0.86486 1.90619 1.28979 1.61183 1.59348 1.22280 0.84151 0.97406 0.89070 1.86440 1.23366 1.30815 1.92974 1.23606 1.00054 0.99115 0.96207 1.22782 1.02120 0.95768 0.96098 1.23072 1.03515 0.91272 0.97226 1.20388 0.94266 0.96644 0.96798 1.20951 1.03856 0.92780 1.07380 0.90541 0.86240 0.89374 0.91995 0.92046 0.75404 0.88682 0.89565 0.89224 0.90514 0.89699 0.87366 0.89299 0.88677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.63 10.95 55.55 0.61 -19.02 16 2 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 3 Si 0.91 17.96 29.59 -169.99 -5.03 12.93 16 4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.46 -11.73 9.05 -37.74 -0.34 -12.07 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 9 C 0.12 3.11 5.57 -106.83 -0.60 2.51 16 10 C -0.17 -4.32 8.70 -38.87 -0.34 -4.66 16 11 C -0.08 -1.73 9.67 -39.66 -0.38 -2.12 16 12 C -0.24 -5.21 5.54 -104.33 -0.58 -5.79 16 13 C 0.14 2.59 5.58 36.00 0.20 2.79 16 14 O -0.35 -6.27 9.58 -44.06 -0.42 -6.69 16 15 C 0.44 7.11 7.27 36.00 0.26 7.37 16 16 O -0.51 -9.19 15.79 -18.76 -0.30 -9.48 16 17 C 0.11 1.44 1.76 -90.96 -0.16 1.28 16 18 O -0.53 -6.70 13.34 -47.57 -0.63 -7.34 16 19 C -0.15 -1.55 7.47 -25.82 -0.19 -1.74 16 20 C -0.13 -1.14 8.02 -25.82 -0.21 -1.35 16 21 C -0.11 -1.22 7.37 -25.92 -0.19 -1.42 16 22 C -0.06 -1.39 9.67 -39.66 -0.38 -1.78 16 23 C -0.23 -5.54 9.80 -38.87 -0.38 -5.92 16 24 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 25 H 0.12 3.10 6.16 -52.49 -0.32 2.78 16 26 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 27 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 28 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 29 H 0.40 4.30 8.58 45.56 0.39 4.69 16 30 H 0.09 0.97 8.09 -51.93 -0.42 0.55 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.11 1.19 7.38 -51.93 -0.38 0.80 16 36 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 37 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 320.47 15.07 4.83 4.83 Total: -1.00 -28.24 320.47 -8.41 -36.64 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -4.08 Total: 9.27 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -3.38 Total: -21.14 kcal Atomic # 7 Polarization: -19.63 SS G_CDS: 0.61 Total: -19.02 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -1.35 Total: -23.51 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.24 -8.41 -36.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785221285.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.578 kcal (2) G-P(sol) polarization free energy of solvation -28.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds