Wall clock time and date at job start Mon Mar 30 2020 01:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86795 * 120.00217 * 2 1 4 4 H 1.48494 * 109.47279 * 239.99846 * 3 2 1 5 5 H 1.48501 * 109.47201 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47103 * 119.99719 * 3 2 1 7 7 C 1.39950 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00184 * 197.85672 * 7 2 1 9 9 C 1.41389 * 119.99858 * 17.86082 * 7 2 1 10 10 C 1.40715 * 120.24812 * 24.38476 * 9 7 2 11 11 C 1.37618 * 119.74825 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.24837 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.74935 * 179.97438 * 12 11 10 14 14 O 1.45193 * 109.47204 * 90.00091 * 13 12 11 15 15 C 1.34227 * 117.00578 * 179.97438 * 14 13 12 16 16 O 1.20833 * 119.99398 * 0.02562 * 15 14 13 17 17 C 1.50691 * 120.00604 * 180.27501 * 15 14 13 18 18 O 1.42905 * 112.84867 * 25.05951 * 17 15 14 19 19 C 1.53785 * 113.61711 * 253.86504 * 17 15 14 20 20 C 1.53959 * 87.02047 * 220.04594 * 19 17 15 21 21 C 1.53783 * 113.61729 * 156.25631 * 17 15 14 22 22 C 1.38632 * 120.49840 * 0.25214 * 12 11 10 23 23 C 1.37613 * 120.24992 * 359.44798 * 22 12 11 24 24 H 0.96998 * 119.99561 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.12480 * 0.02562 * 10 9 7 26 26 H 1.07999 * 119.87323 * 179.97438 * 11 10 9 27 27 H 1.09000 * 109.47491 * 330.00043 * 13 12 11 28 28 H 1.08997 * 109.47202 * 210.00513 * 13 12 11 29 29 H 0.96696 * 113.99785 * 309.67049 * 18 17 15 30 30 H 1.08996 * 113.61118 * 334.56779 * 19 17 15 31 31 H 1.08998 * 113.61149 * 105.46889 * 19 17 15 32 32 H 1.09002 * 113.53405 * 270.81427 * 20 19 17 33 33 H 1.09000 * 113.73999 * 139.94497 * 20 19 17 34 34 H 1.08997 * 113.61507 * 254.52849 * 21 17 15 35 35 H 1.09001 * 113.61257 * 25.34696 * 21 17 15 36 36 H 1.08003 * 119.87103 * 179.70017 * 22 12 11 37 37 H 1.08000 * 120.13103 * 180.27612 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2124 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6963 1.2126 7 6 2.0080 -1.2120 0.0005 8 1 3.0490 -1.2345 0.2873 9 6 1.3521 -2.4071 -0.3745 10 6 0.2209 -2.3626 -1.2102 11 6 -0.4099 -3.5321 -1.5684 12 6 0.0648 -4.7508 -1.1086 13 6 -0.6349 -6.0245 -1.5074 14 8 -0.0509 -6.5335 -2.7354 15 6 -0.5645 -7.6713 -3.2286 16 8 -1.4725 -8.2235 -2.6534 17 6 -0.0052 -8.2632 -4.4965 18 8 1.3501 -7.8792 -4.7374 19 6 -0.9227 -8.0833 -5.7175 20 6 -0.5340 -9.5175 -6.1202 21 6 -0.2501 -9.7754 -4.6309 22 6 1.1750 -4.8061 -0.2801 23 6 1.8252 -3.6498 0.0858 24 1 -0.4849 0.8401 -0.0004 25 1 -0.1509 -1.4143 -1.5692 26 1 -1.2785 -3.5003 -2.2094 27 1 -1.6944 -5.8229 -1.6653 28 1 -0.5201 -6.7652 -0.7161 29 1 1.5056 -6.9267 -4.6773 30 1 -1.9758 -7.9724 -5.4596 31 1 -0.5747 -7.3230 -6.4168 32 1 0.3549 -9.5673 -6.7491 33 1 -1.3647 -10.1031 -6.5141 34 1 0.6400 -10.3793 -4.4544 35 1 -1.1182 -10.1283 -4.0742 36 1 1.5333 -5.7607 0.0761 37 1 2.6925 -3.6955 0.7277 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785221285.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:25 Heat of formation + Delta-G solvation = -117.515346 kcal Electronic energy + Delta-G solvation = -20538.267627 eV Core-core repulsion = 17245.146254 eV Total energy + Delta-G solvation = -3293.121373 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.02337 -39.97698 -39.28492 -37.59863 -35.80710 -35.55701 -32.63244 -31.25763 -29.26520 -27.51208 -26.87109 -25.48338 -22.99050 -22.76814 -21.85437 -20.69727 -19.44871 -19.28263 -18.28313 -17.53831 -17.22146 -16.74539 -16.21446 -16.06179 -15.70579 -15.49933 -15.08577 -14.46694 -14.20705 -14.04677 -13.88354 -13.65003 -13.34892 -13.23326 -13.06517 -12.80898 -12.62508 -12.43110 -12.28006 -12.16436 -11.86758 -11.74789 -11.57715 -11.37981 -11.29916 -11.05719 -10.86040 -9.46211 -9.36077 -8.70814 -6.41470 0.69700 0.96638 1.08784 1.38103 1.43860 1.50948 1.82659 2.18743 2.68753 2.89197 3.32541 3.42136 3.60732 3.72295 3.79375 4.03595 4.05551 4.32364 4.45018 4.49791 4.52610 4.64935 4.69612 4.89897 4.95181 4.98358 5.02311 5.10053 5.27740 5.34148 5.36581 5.40185 5.62685 5.85682 6.03448 6.11550 6.29840 6.39886 6.62001 6.66923 6.86627 6.94857 8.25904 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.036725 B = 0.003322 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.234866 B = 8427.047326 C = 8557.887946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.036 3.964 3 Si 0.985 3.015 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.494 4.494 8 H 0.080 0.920 9 C 0.089 3.911 10 C -0.193 4.193 11 C -0.079 4.079 12 C -0.232 4.232 13 C 0.141 3.859 14 O -0.358 6.358 15 C 0.439 3.561 16 O -0.532 6.532 17 C 0.106 3.894 18 O -0.534 6.534 19 C -0.148 4.148 20 C -0.116 4.116 21 C -0.116 4.116 22 C -0.065 4.065 23 C -0.245 4.245 24 H 0.291 0.709 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.401 0.599 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.115 0.885 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.123 -11.162 -10.349 15.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.522 4.522 8 H 0.098 0.902 9 C 0.087 3.913 10 C -0.212 4.212 11 C -0.097 4.097 12 C -0.233 4.233 13 C 0.069 3.931 14 O -0.274 6.274 15 C 0.283 3.717 16 O -0.422 6.422 17 C 0.063 3.937 18 O -0.342 6.342 19 C -0.186 4.186 20 C -0.153 4.153 21 C -0.153 4.153 22 C -0.083 4.083 23 C -0.264 4.264 24 H 0.102 0.898 25 H 0.123 0.877 26 H 0.125 0.875 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.253 0.747 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.106 0.894 35 H 0.123 0.877 36 H 0.133 0.867 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.530 -11.765 -10.193 15.642 hybrid contribution 0.037 1.569 0.725 1.728 sum -1.492 -10.197 -9.468 13.995 Atomic orbital electron populations 1.69861 1.09112 1.31001 1.34295 1.26825 0.95506 1.04704 0.90977 0.85210 0.78791 0.75321 0.80185 1.18340 1.19104 1.18288 1.19922 0.98609 0.92443 1.41255 0.90177 1.18031 0.91545 0.93123 0.88604 1.21271 1.00312 0.96998 1.02647 1.20758 0.98422 0.92348 0.98195 1.18937 1.02870 0.92318 1.09169 1.21553 0.95855 0.92874 0.82868 1.86634 1.60149 1.38880 1.41747 1.25196 0.80750 0.78653 0.87118 1.90607 1.30000 1.61480 1.60139 1.22647 0.84547 0.98453 0.88046 1.86434 1.23456 1.31518 1.92807 1.23655 0.99415 1.00654 0.94883 1.22764 1.03182 0.94626 0.94692 1.23163 1.03569 0.89755 0.98848 1.20687 0.94078 0.97193 0.96376 1.21154 1.04520 0.92945 1.07829 0.89805 0.87697 0.87507 0.91389 0.91308 0.74712 0.88741 0.88423 0.88403 0.88401 0.89351 0.87732 0.86705 0.87954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.75 10.95 21.83 0.24 -41.51 16 2 C 0.04 1.77 5.14 85.26 0.44 2.21 16 3 Si 0.98 36.95 29.59 68.60 2.03 38.98 16 4 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 5 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 6 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 7 C -0.49 -26.09 9.05 23.46 0.21 -25.88 16 8 H 0.08 4.05 7.91 -2.91 -0.02 4.03 16 9 C 0.09 4.78 5.57 -21.29 -0.12 4.66 16 10 C -0.19 -10.03 8.70 22.73 0.20 -9.83 16 11 C -0.08 -3.63 9.67 22.22 0.21 -3.42 16 12 C -0.23 -9.97 5.54 -19.68 -0.11 -10.08 16 13 C 0.14 5.17 5.58 71.24 0.40 5.56 16 14 O -0.36 -12.30 9.58 -46.79 -0.45 -12.75 16 15 C 0.44 13.53 7.27 71.23 0.52 14.04 16 16 O -0.53 -18.41 15.79 21.94 0.35 -18.06 16 17 C 0.11 2.49 1.76 -11.01 -0.02 2.47 16 18 O -0.53 -12.57 13.34 -137.19 -1.83 -14.40 16 19 C -0.15 -2.64 7.47 31.18 0.23 -2.41 16 20 C -0.12 -1.66 8.02 31.18 0.25 -1.41 16 21 C -0.12 -2.25 7.37 31.12 0.23 -2.02 16 22 C -0.07 -2.86 9.67 22.22 0.21 -2.65 16 23 C -0.25 -11.94 9.80 22.73 0.22 -11.72 16 24 H 0.29 13.39 8.30 -92.71 -0.77 12.62 16 25 H 0.11 5.67 6.16 -2.91 -0.02 5.65 16 26 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 27 H 0.07 2.41 8.07 -2.39 -0.02 2.39 16 28 H 0.07 2.43 8.07 -2.39 -0.02 2.41 16 29 H 0.40 8.17 8.58 -74.06 -0.64 7.53 16 30 H 0.09 1.71 8.09 -2.39 -0.02 1.69 16 31 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.10 2.11 7.38 -2.39 -0.02 2.09 16 36 H 0.11 4.38 8.06 -2.91 -0.02 4.35 16 37 H 0.10 4.69 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -60.91 320.47 3.67 -57.23 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: 0.45 Total: 30.97 kcal Atomic # 6 Polarization: -43.35 SS G_CDS: 2.88 Total: -40.47 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.24 Total: -41.51 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -1.93 Total: -45.21 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 2.03 Total: 38.98 kcal Total: -60.91 3.67 -57.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785221285.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.280 kcal (2) G-P(sol) polarization free energy of solvation -60.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds