Wall clock time and date at job start Mon Mar 30 2020 01:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 119.99992 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46693 * 120.00362 * 3 2 1 6 6 H 1.48502 * 109.46931 * 240.00214 * 3 2 1 7 7 C 1.37875 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00188 * 187.12085 * 7 2 1 9 9 C 1.50695 * 120.00268 * 7.12364 * 7 2 1 10 10 C 1.53002 * 115.54910 * 275.21782 * 9 7 2 11 11 O 1.45201 * 109.46574 * 301.70265 * 10 9 7 12 12 C 1.34905 * 116.99914 * 184.74718 * 11 10 9 13 13 O 1.21618 * 119.99559 * 0.02562 * 12 11 10 14 14 C 1.46470 * 120.00042 * 180.02562 * 12 11 10 15 15 O 1.34960 * 126.01474 * 359.69107 * 14 12 11 16 16 C 1.33925 * 109.37340 * 179.86064 * 15 14 12 17 17 C 1.35182 * 108.76887 * 0.40619 * 16 15 14 18 18 C 1.36566 * 126.01252 * 180.02562 * 14 12 11 19 19 C 1.51074 * 143.66468 * 359.97438 * 18 14 12 20 20 C 1.54380 * 105.23979 * 197.15723 * 19 18 14 21 21 C 1.51152 * 143.43068 * 179.74778 * 17 16 15 22 22 C 1.52999 * 117.50478 * 129.54110 * 9 7 2 23 23 C 1.53005 * 117.49888 * 60.87863 * 9 7 2 24 24 H 0.96996 * 120.00187 * 175.39082 * 1 2 3 25 25 H 1.08995 * 109.47330 * 61.69951 * 10 9 7 26 26 H 1.09003 * 109.46933 * 181.70696 * 10 9 7 27 27 H 1.07999 * 125.61539 * 180.16202 * 16 15 14 28 28 H 1.08998 * 110.29129 * 316.10388 * 19 18 14 29 29 H 1.09006 * 110.28609 * 78.12874 * 19 18 14 30 30 H 1.09005 * 110.75676 * 91.86371 * 20 19 18 31 31 H 1.08992 * 110.76231 * 215.06553 * 20 19 18 32 32 H 1.09001 * 110.28490 * 43.89634 * 21 17 16 33 33 H 1.08994 * 110.36524 * 281.83036 * 21 17 16 34 34 H 1.09007 * 117.49671 * 359.97438 * 22 9 7 35 35 H 1.08992 * 117.50412 * 145.02048 * 22 9 7 36 36 H 1.09000 * 117.49814 * 214.98081 * 23 9 7 37 37 H 1.08996 * 117.49568 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1028 1.6965 -1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0782 -1.1977 0.1154 9 6 1.2598 -2.4940 -0.1630 10 6 0.6777 -3.0861 1.1222 11 8 1.7462 -3.3073 2.0802 12 6 1.4154 -3.9195 3.2360 13 8 0.2650 -4.2592 3.4365 14 6 2.4417 -4.1750 4.2492 15 8 3.7496 -3.8566 4.1519 16 6 4.3840 -4.2381 5.2679 17 6 3.4902 -4.8185 6.0996 18 6 2.2448 -4.7830 5.4561 19 6 1.2000 -5.4212 6.3412 20 6 1.8278 -5.4542 7.7512 21 6 3.3412 -5.4828 7.4491 22 6 1.7683 -3.4718 -1.2241 23 6 0.4682 -2.6979 -1.4563 24 1 -0.4850 -0.8373 -0.0675 25 1 -0.0507 -2.3936 1.5439 26 1 0.1897 -4.0343 0.8968 27 1 5.4372 -4.1076 5.4686 28 1 0.2906 -4.8203 6.3462 29 1 0.9820 -6.4331 5.9993 30 1 1.5633 -4.5582 8.3129 31 1 1.5211 -6.3507 8.2898 32 1 3.8893 -4.9242 8.2078 33 1 3.6980 -6.5118 7.4068 34 1 2.6414 -3.1746 -1.8052 35 1 1.6880 -4.5369 -1.0069 36 1 -0.4669 -3.2542 -1.3917 37 1 0.4857 -1.8916 -2.1895 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797082217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:04 Heat of formation + Delta-G solvation = -46.537109 kcal Electronic energy + Delta-G solvation = -21051.238596 eV Core-core repulsion = 17761.195070 eV Total energy + Delta-G solvation = -3290.043526 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.88677 -39.63109 -37.45109 -37.02897 -35.40409 -31.89996 -30.80050 -30.60699 -27.83531 -26.59138 -24.82870 -23.52279 -22.02146 -21.34707 -20.39395 -19.61166 -19.47615 -17.43132 -16.97114 -16.66260 -16.24741 -15.65665 -15.42324 -15.04806 -14.14259 -14.10940 -13.72250 -13.36471 -13.06234 -12.92540 -12.63782 -12.30341 -11.91108 -11.87039 -11.75958 -11.37830 -11.35405 -10.99818 -10.80125 -10.52750 -10.41259 -10.10842 -10.05575 -9.63711 -9.36261 -8.65491 -8.56183 -8.49172 -8.35008 -6.36349 -4.09174 1.00675 2.19565 2.60582 3.15777 3.38279 3.44839 3.46295 3.65135 3.88325 4.51695 4.56610 4.75190 4.82152 4.94265 4.99077 5.15767 5.30594 5.46596 5.50142 5.56419 5.67510 5.75194 5.78052 5.91297 5.96743 6.01781 6.03857 6.09202 6.25141 6.26890 6.39061 6.53771 6.77873 6.88005 6.90716 7.15174 7.20672 8.14257 8.24931 8.44061 8.85725 9.64165 11.02797 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.022392 B = 0.004600 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.126846 B = 6085.154987 C = 6546.183800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.025 3.975 3 Si 1.068 2.932 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.563 4.563 8 H 0.057 0.943 9 C 0.013 3.987 10 C 0.111 3.889 11 O -0.317 6.317 12 C 0.540 3.460 13 O -0.500 6.500 14 C -0.033 4.033 15 O -0.136 6.136 16 C 0.017 3.983 17 C -0.225 4.225 18 C -0.108 4.108 19 C -0.055 4.055 20 C -0.118 4.118 21 C -0.044 4.044 22 C -0.190 4.190 23 C -0.167 4.167 24 H 0.272 0.728 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.212 0.788 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.284 -10.855 13.106 18.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.180 4.180 3 Si 0.896 3.104 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.601 4.601 8 H 0.075 0.925 9 C 0.013 3.987 10 C 0.037 3.963 11 O -0.232 6.232 12 C 0.385 3.615 13 O -0.392 6.392 14 C -0.083 4.083 15 O -0.030 6.030 16 C -0.054 4.054 17 C -0.226 4.226 18 C -0.110 4.110 19 C -0.092 4.092 20 C -0.156 4.156 21 C -0.081 4.081 22 C -0.227 4.227 23 C -0.205 4.205 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.063 0.937 27 H 0.228 0.772 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.834 -9.130 12.907 16.852 hybrid contribution 0.137 -1.742 -0.066 1.748 sum 5.971 -10.871 12.841 17.853 Atomic orbital electron populations 1.70767 1.06779 1.31318 1.45199 1.25835 0.96520 1.02410 0.93229 0.83555 0.74936 0.75244 0.76645 1.20784 1.21390 1.21329 1.21203 0.94565 0.89237 1.55069 0.92523 1.19055 0.99397 0.95949 0.84342 1.23000 0.86925 0.98094 0.88238 1.86740 1.42185 1.68774 1.25459 1.19305 0.85358 0.75478 0.81377 1.90876 1.18915 1.50445 1.78920 1.20023 0.82428 1.09583 0.96245 1.84348 1.18678 1.63117 1.36878 1.23485 0.98277 0.99292 0.84305 1.21292 0.93778 1.07222 1.00291 1.21164 0.98208 0.98902 0.92684 1.20580 0.96292 1.00501 0.91841 1.22381 0.94189 1.02737 0.96280 1.20406 0.96875 0.99627 0.91176 1.22920 0.97816 0.95580 1.06404 1.22797 0.93484 1.02307 1.01877 0.91683 0.91164 0.93669 0.77175 0.89838 0.89659 0.90735 0.90160 0.90722 0.90336 0.89677 0.91288 0.91190 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.84 13.57 55.43 0.75 -26.09 16 2 C 0.03 0.72 5.39 -17.82 -0.10 0.62 16 3 Si 1.07 25.22 29.91 -169.99 -5.08 20.13 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.56 -15.87 8.64 -34.44 -0.30 -16.17 16 8 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 9 C 0.01 0.33 1.20 -155.66 -0.19 0.15 16 10 C 0.11 2.68 5.31 37.16 0.20 2.88 16 11 O -0.32 -7.58 10.05 -42.48 -0.43 -8.00 16 12 C 0.54 11.57 7.93 34.05 0.27 11.84 16 13 O -0.50 -11.10 16.60 -19.36 -0.32 -11.43 16 14 C -0.03 -0.60 7.18 -36.87 -0.26 -0.86 16 15 O -0.14 -2.30 10.67 4.66 0.05 -2.25 16 16 C 0.02 0.20 12.08 29.64 0.36 0.56 16 17 C -0.22 -2.76 6.93 -104.74 -0.73 -3.48 16 18 C -0.11 -1.63 6.66 -104.30 -0.69 -2.32 16 19 C -0.06 -0.66 6.76 -26.98 -0.18 -0.85 16 20 C -0.12 -1.02 7.06 -25.30 -0.18 -1.20 16 21 C -0.04 -0.38 6.76 -26.95 -0.18 -0.56 16 22 C -0.19 -4.19 9.94 -26.69 -0.27 -4.46 16 23 C -0.17 -3.83 8.75 -26.69 -0.23 -4.06 16 24 H 0.27 7.96 6.15 -40.82 -0.25 7.71 16 25 H 0.07 1.82 7.76 -51.93 -0.40 1.42 16 26 H 0.05 1.00 8.01 -51.93 -0.42 0.59 16 27 H 0.21 1.55 8.06 -52.49 -0.42 1.12 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 37 H 0.09 2.19 8.14 -51.93 -0.42 1.77 16 LS Contribution 321.91 15.07 4.85 4.85 Total: -1.00 -32.64 321.91 -7.59 -40.23 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -4.93 Total: 0.47 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -2.48 Total: -17.92 kcal Atomic # 7 Polarization: -26.84 SS G_CDS: 0.75 Total: -26.09 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.70 Total: -21.68 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.08 Total: 20.13 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.64 -7.59 -40.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797082217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.309 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds