Wall clock time and date at job start Mon Mar 30 2020 01:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00076 * 2 1 4 4 H 1.48502 * 109.47237 * 269.99772 * 3 2 1 5 5 H 1.48506 * 109.46910 * 29.99935 * 3 2 1 6 6 H 1.48501 * 109.47192 * 149.99883 * 3 2 1 7 7 C 1.37880 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00476 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99673 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46965 * 179.97438 * 9 7 2 11 11 O 1.45202 * 109.47008 * 180.02562 * 10 9 7 12 12 C 1.34750 * 116.99813 * 180.02562 * 11 10 9 13 13 O 1.21504 * 119.99913 * 359.97438 * 12 11 10 14 14 C 1.47396 * 119.99713 * 179.72902 * 12 11 10 15 15 C 1.39770 * 120.19815 * 359.97438 * 14 12 11 16 16 C 1.37774 * 119.90149 * 179.70024 * 15 14 12 17 17 C 1.38563 * 120.30337 * 0.60391 * 16 15 14 18 18 C 1.38047 * 120.40957 * 359.67252 * 17 16 15 19 19 C 1.38716 * 120.08567 * 0.02664 * 18 17 16 20 20 O 1.35642 * 120.15113 * 179.97438 * 19 18 17 21 21 C 1.42899 * 117.00088 * 354.44046 * 20 19 18 22 22 C 1.52995 * 117.49763 * 224.93559 * 21 20 19 23 23 C 1.53000 * 117.49944 * 156.27815 * 21 20 19 24 24 H 0.96995 * 120.00261 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46790 * 60.00282 * 9 7 2 26 26 H 1.08994 * 109.47350 * 300.00060 * 9 7 2 27 27 H 1.08995 * 109.46927 * 60.00430 * 10 9 7 28 28 H 1.09002 * 109.47346 * 300.00140 * 10 9 7 29 29 H 1.07993 * 120.04831 * 359.97438 * 15 14 12 30 30 H 1.07997 * 119.84672 * 180.31738 * 16 15 14 31 31 H 1.08006 * 119.79580 * 179.69187 * 17 16 15 32 32 H 1.08003 * 119.96008 * 180.02562 * 18 17 16 33 33 H 1.09000 * 115.55369 * 10.60690 * 21 20 19 34 34 H 1.09001 * 117.50075 * 359.97438 * 22 21 20 35 35 H 1.09000 * 117.49941 * 145.02111 * 22 21 20 36 36 H 1.08998 * 117.49757 * 214.98348 * 23 21 20 37 37 H 1.09003 * 117.49510 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5193 -4.9196 -0.0001 12 6 2.2533 -6.0497 0.0004 13 8 3.4666 -5.9860 0.0008 14 6 1.5841 -7.3630 0.0058 15 6 0.1886 -7.4409 0.0111 16 6 -0.4306 -8.6717 0.0099 17 6 0.3239 -9.8339 0.0162 18 6 1.7030 -9.7717 0.0168 19 6 2.3436 -8.5414 0.0118 20 8 3.6986 -8.4787 0.0129 21 6 4.4050 -9.7141 0.1428 22 6 5.5840 -9.7545 1.1170 23 6 5.8373 -9.7685 -0.3925 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5568 0.8902 27 1 2.8719 -3.6044 0.8905 28 1 2.8720 -3.6044 -0.8894 29 1 -0.4035 -6.5378 0.0116 30 1 -1.5089 -8.7309 0.0088 31 1 -0.1700 -10.7944 0.0203 32 1 2.2839 -10.6822 0.0213 33 1 3.7983 -10.6148 0.0493 34 1 5.8211 -8.8388 1.6586 35 1 5.7532 -10.6820 1.6642 36 1 6.1729 -10.7050 -0.8379 37 1 6.2405 -8.8620 -0.8441 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805722144.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:19 Heat of formation + Delta-G solvation = -68.579766 kcal Electronic energy + Delta-G solvation = -20371.116010 eV Core-core repulsion = 17080.116643 eV Total energy + Delta-G solvation = -3290.999367 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.66864 -39.34512 -37.93844 -35.93555 -35.35433 -33.30617 -31.64841 -30.13607 -29.92918 -25.34443 -24.25729 -23.66728 -22.71205 -21.28903 -21.10174 -20.42520 -18.71227 -17.42488 -16.52240 -16.20278 -15.87058 -15.57645 -15.45029 -14.95528 -14.86434 -14.45264 -14.19498 -14.09178 -13.18405 -12.76737 -12.56712 -12.32785 -12.29345 -11.89583 -11.81335 -11.33882 -11.16966 -10.99216 -10.74780 -10.69578 -10.64250 -10.31858 -10.06685 -9.56698 -9.55024 -9.26061 -9.21399 -8.41310 -8.33728 -6.07501 -4.11412 0.72333 1.22318 2.79337 2.85543 3.22875 3.30868 3.36900 3.42154 3.46512 3.79589 4.26041 4.41650 4.56813 4.60969 4.67856 4.73164 4.90298 5.04164 5.26184 5.29118 5.30195 5.33447 5.52732 5.64730 5.72107 5.85784 6.01298 6.11778 6.17050 6.19689 6.28673 6.55703 6.70127 7.05940 7.24756 7.60671 7.67014 7.90992 8.25533 8.38132 8.94145 9.52709 11.04110 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.023037 B = 0.003596 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.158669 B = 7785.335426 C = 8908.498320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.077 3.923 11 O -0.356 6.356 12 C 0.499 3.501 13 O -0.499 6.499 14 C -0.155 4.155 15 C -0.021 4.021 16 C -0.174 4.174 17 C -0.049 4.049 18 C -0.229 4.229 19 C 0.190 3.810 20 O -0.248 6.248 21 C -0.010 4.010 22 C -0.181 4.181 23 C -0.168 4.168 24 H 0.263 0.737 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.149 0.851 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.126 0.874 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.068 -24.111 0.420 24.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.005 3.995 11 O -0.273 6.273 12 C 0.343 3.657 13 O -0.389 6.389 14 C -0.157 4.157 15 C -0.039 4.039 16 C -0.192 4.192 17 C -0.067 4.067 18 C -0.247 4.247 19 C 0.142 3.858 20 O -0.159 6.159 21 C -0.067 4.067 22 C -0.218 4.218 23 C -0.205 4.205 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.167 0.833 30 H 0.150 0.850 31 H 0.147 0.853 32 H 0.154 0.846 33 H 0.143 0.857 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.424 -23.734 0.410 23.983 hybrid contribution 0.511 0.781 -0.007 0.933 sum 3.935 -22.953 0.403 23.291 Atomic orbital electron populations 1.69970 1.06081 1.26940 1.49925 1.24979 0.94913 0.99358 0.94909 0.86475 0.79784 0.82842 0.78228 1.20492 1.21068 1.19718 1.20994 0.93203 0.90145 1.52008 0.92260 1.19170 0.94203 0.89019 0.98842 1.23616 0.96355 0.78619 1.00918 1.86553 1.41975 1.15524 1.83221 1.20780 0.85768 0.85163 0.73967 1.90832 1.14675 1.88060 1.45304 1.18686 0.93334 0.89109 1.14584 1.21498 0.92127 0.99288 0.90999 1.21081 1.00565 0.91881 1.05668 1.21150 0.92897 0.98853 0.93796 1.21138 0.95878 0.96304 1.11398 1.18978 0.82709 0.92704 0.91381 1.86337 1.14707 1.29808 1.85030 1.23174 0.89007 0.87659 1.06823 1.23465 1.00845 1.04306 0.93150 1.23358 0.96040 1.04319 0.96776 0.92745 0.95350 0.95334 0.92372 0.92371 0.83283 0.84956 0.85274 0.84556 0.85727 0.87538 0.87768 0.87593 0.87467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -15.07 9.11 -34.44 -0.31 -15.39 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.02 0.66 5.35 -27.88 -0.15 0.51 16 10 C 0.08 1.81 5.41 37.16 0.20 2.01 16 11 O -0.36 -7.61 9.47 -40.63 -0.38 -7.99 16 12 C 0.50 10.00 7.89 34.46 0.27 10.27 16 13 O -0.50 -11.14 14.95 -26.59 -0.40 -11.54 16 14 C -0.16 -2.50 5.88 -104.86 -0.62 -3.12 16 15 C -0.02 -0.28 9.61 -39.18 -0.38 -0.65 16 16 C -0.17 -1.77 10.02 -39.63 -0.40 -2.17 16 17 C -0.05 -0.44 10.03 -39.53 -0.40 -0.84 16 18 C -0.23 -2.39 9.18 -39.48 -0.36 -2.75 16 19 C 0.19 2.72 6.69 -38.67 -0.26 2.46 16 20 O -0.25 -3.78 8.46 -40.51 -0.34 -4.13 16 21 C -0.01 -0.11 6.20 -26.73 -0.17 -0.27 16 22 C -0.18 -1.64 10.48 -26.70 -0.28 -1.92 16 23 C -0.17 -1.51 10.48 -26.70 -0.28 -1.79 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.15 1.94 7.61 -52.49 -0.40 1.54 16 30 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 32 H 0.14 1.03 5.52 -52.48 -0.29 0.74 16 33 H 0.13 0.95 5.33 -51.93 -0.28 0.67 16 34 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 324.60 15.07 4.89 4.89 Total: -1.00 -33.52 324.60 -8.47 -41.99 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -4.73 Total: -1.98 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -3.22 Total: -12.00 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.74 Total: -25.92 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -1.13 Total: -23.65 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.52 -8.47 -41.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805722144.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.588 kcal (2) G-P(sol) polarization free energy of solvation -33.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds