Wall clock time and date at job start Mon Mar 30 2020 01:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00076 * 2 1 4 4 H 1.48502 * 109.47237 * 269.99772 * 3 2 1 5 5 H 1.48506 * 109.46910 * 29.99935 * 3 2 1 6 6 H 1.48501 * 109.47192 * 149.99883 * 3 2 1 7 7 C 1.37880 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00476 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99673 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46965 * 179.97438 * 9 7 2 11 11 O 1.45202 * 109.47008 * 180.02562 * 10 9 7 12 12 C 1.34750 * 116.99813 * 180.02562 * 11 10 9 13 13 O 1.21504 * 119.99913 * 359.97438 * 12 11 10 14 14 C 1.47396 * 119.99713 * 179.72902 * 12 11 10 15 15 C 1.39770 * 120.19815 * 359.97438 * 14 12 11 16 16 C 1.37774 * 119.90149 * 179.70024 * 15 14 12 17 17 C 1.38563 * 120.30337 * 0.60391 * 16 15 14 18 18 C 1.38047 * 120.40957 * 359.67252 * 17 16 15 19 19 C 1.38716 * 120.08567 * 0.02664 * 18 17 16 20 20 O 1.35642 * 120.15113 * 179.97438 * 19 18 17 21 21 C 1.42899 * 117.00088 * 354.44046 * 20 19 18 22 22 C 1.52995 * 117.49763 * 224.93559 * 21 20 19 23 23 C 1.53000 * 117.49944 * 156.27815 * 21 20 19 24 24 H 0.96995 * 120.00261 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46790 * 60.00282 * 9 7 2 26 26 H 1.08994 * 109.47350 * 300.00060 * 9 7 2 27 27 H 1.08995 * 109.46927 * 60.00430 * 10 9 7 28 28 H 1.09002 * 109.47346 * 300.00140 * 10 9 7 29 29 H 1.07993 * 120.04831 * 359.97438 * 15 14 12 30 30 H 1.07997 * 119.84672 * 180.31738 * 16 15 14 31 31 H 1.08006 * 119.79580 * 179.69187 * 17 16 15 32 32 H 1.08003 * 119.96008 * 180.02562 * 18 17 16 33 33 H 1.09000 * 115.55369 * 10.60690 * 21 20 19 34 34 H 1.09001 * 117.50075 * 359.97438 * 22 21 20 35 35 H 1.09000 * 117.49941 * 145.02111 * 22 21 20 36 36 H 1.08998 * 117.49757 * 214.98348 * 23 21 20 37 37 H 1.09003 * 117.49510 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5193 -4.9196 -0.0001 12 6 2.2533 -6.0497 0.0004 13 8 3.4666 -5.9860 0.0008 14 6 1.5841 -7.3630 0.0058 15 6 0.1886 -7.4409 0.0111 16 6 -0.4306 -8.6717 0.0099 17 6 0.3239 -9.8339 0.0162 18 6 1.7030 -9.7717 0.0168 19 6 2.3436 -8.5414 0.0118 20 8 3.6986 -8.4787 0.0129 21 6 4.4050 -9.7141 0.1428 22 6 5.5840 -9.7545 1.1170 23 6 5.8373 -9.7685 -0.3925 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5568 0.8902 27 1 2.8719 -3.6044 0.8905 28 1 2.8720 -3.6044 -0.8894 29 1 -0.4035 -6.5378 0.0116 30 1 -1.5089 -8.7309 0.0088 31 1 -0.1700 -10.7944 0.0203 32 1 2.2839 -10.6822 0.0213 33 1 3.7983 -10.6148 0.0493 34 1 5.8211 -8.8388 1.6586 35 1 5.7532 -10.6820 1.6642 36 1 6.1729 -10.7050 -0.8379 37 1 6.2405 -8.8620 -0.8441 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805722144.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:19 Heat of formation + Delta-G solvation = -87.387508 kcal Electronic energy + Delta-G solvation = -20371.931575 eV Core-core repulsion = 17080.116643 eV Total energy + Delta-G solvation = -3291.814932 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.82606 -40.73804 -38.85190 -37.59758 -36.24017 -35.46283 -32.88657 -31.96744 -30.91477 -27.29122 -25.32236 -24.86524 -23.40925 -22.99208 -22.20702 -21.82149 -19.75143 -18.94241 -18.21098 -17.74139 -17.55285 -16.79827 -16.55046 -16.25880 -15.97472 -15.76169 -15.08134 -15.03409 -14.97223 -14.39948 -14.33501 -13.42432 -13.31175 -13.12000 -13.07244 -12.81847 -12.60613 -12.57306 -12.50910 -12.20672 -11.86102 -11.54497 -11.51076 -11.45344 -11.25113 -11.08977 -10.63314 -10.16947 -9.26453 -8.28898 -6.42475 -0.32581 0.33274 1.39230 1.41822 1.52397 1.52702 1.70811 1.95739 2.38975 2.64177 2.86019 3.05115 3.51544 3.62891 3.87739 3.90126 3.91091 3.97013 4.16879 4.16987 4.22743 4.35447 4.48791 4.63250 4.67822 4.68140 4.85036 4.92189 5.09652 5.15343 5.22703 5.29741 5.42111 5.43019 5.50806 5.71229 5.73070 6.04211 6.36420 6.69044 6.75187 7.27092 8.83910 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.023037 B = 0.003596 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.158669 B = 7785.335426 C = 8908.498320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.975 3.025 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.553 4.553 8 H 0.063 0.937 9 C 0.034 3.966 10 C 0.092 3.908 11 O -0.361 6.361 12 C 0.494 3.506 13 O -0.533 6.533 14 C -0.196 4.196 15 C -0.034 4.034 16 C -0.166 4.166 17 C -0.027 4.027 18 C -0.221 4.221 19 C 0.175 3.825 20 O -0.289 6.289 21 C -0.029 4.029 22 C -0.179 4.179 23 C -0.166 4.166 24 H 0.269 0.731 25 H 0.008 0.992 26 H 0.008 0.992 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.139 0.861 30 H 0.165 0.835 31 H 0.179 0.821 32 H 0.172 0.828 33 H 0.160 0.840 34 H 0.079 0.921 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.780 -26.877 0.436 27.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.192 4.192 3 Si 0.799 3.201 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.591 4.591 8 H 0.081 0.919 9 C -0.003 4.003 10 C 0.019 3.981 11 O -0.278 6.278 12 C 0.341 3.659 13 O -0.425 6.425 14 C -0.198 4.198 15 C -0.052 4.052 16 C -0.184 4.184 17 C -0.045 4.045 18 C -0.239 4.239 19 C 0.128 3.872 20 O -0.200 6.200 21 C -0.085 4.085 22 C -0.216 4.216 23 C -0.202 4.202 24 H 0.078 0.922 25 H 0.026 0.974 26 H 0.027 0.973 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.157 0.843 30 H 0.182 0.818 31 H 0.196 0.804 32 H 0.189 0.811 33 H 0.177 0.823 34 H 0.098 0.902 35 H 0.156 0.844 36 H 0.158 0.842 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.131 -26.522 0.425 26.710 hybrid contribution 0.550 1.476 -0.009 1.575 sum 3.681 -25.046 0.416 25.319 Atomic orbital electron populations 1.70088 1.07781 1.28366 1.50207 1.25971 0.95891 1.03397 0.93931 0.85298 0.78483 0.77620 0.78741 1.19433 1.20096 1.18880 1.21360 0.93637 0.91265 1.52813 0.91913 1.18970 0.94218 0.90360 0.96788 1.23154 0.95221 0.79078 1.00621 1.86545 1.42028 1.15501 1.83756 1.21652 0.85706 0.85858 0.72686 1.90793 1.16006 1.88394 1.47295 1.18688 0.94714 0.87370 1.19039 1.21542 0.90930 1.00758 0.91979 1.21475 1.02287 0.90798 1.03821 1.21743 0.92248 1.00371 0.90090 1.21555 0.96873 0.95685 1.09756 1.19265 0.82669 0.93464 0.91831 1.86278 1.15594 1.32925 1.85251 1.23681 0.89578 0.87250 1.07955 1.23532 1.00133 1.04633 0.93278 1.23451 0.95171 1.04812 0.96802 0.92222 0.97359 0.97337 0.92624 0.92610 0.84338 0.81776 0.80412 0.81107 0.82327 0.90202 0.84440 0.84170 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.48 13.29 21.45 0.28 -56.20 16 2 C 0.01 0.42 5.46 84.66 0.46 0.88 16 3 Si 0.98 44.75 29.54 68.60 2.03 46.78 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.55 -32.70 9.11 25.60 0.23 -32.46 16 8 H 0.06 3.58 7.74 -2.91 -0.02 3.55 16 9 C 0.03 1.91 5.35 29.85 0.16 2.07 16 10 C 0.09 4.60 5.41 71.98 0.39 4.99 16 11 O -0.36 -16.55 9.47 -56.61 -0.54 -17.09 16 12 C 0.49 21.18 7.89 70.23 0.55 21.74 16 13 O -0.53 -25.52 14.95 26.82 0.40 -25.12 16 14 C -0.20 -6.56 5.88 -20.02 -0.12 -6.67 16 15 C -0.03 -0.90 9.61 22.53 0.22 -0.68 16 16 C -0.17 -2.86 10.02 22.24 0.22 -2.64 16 17 C -0.03 -0.36 10.03 22.30 0.22 -0.13 16 18 C -0.22 -3.83 9.18 22.34 0.21 -3.62 16 19 C 0.17 4.95 6.69 22.86 0.15 5.10 16 20 O -0.29 -8.99 8.46 -68.64 -0.58 -9.57 16 21 C -0.03 -0.57 6.20 30.59 0.19 -0.38 16 22 C -0.18 -3.07 10.48 30.62 0.32 -2.75 16 23 C -0.17 -2.81 10.48 30.62 0.32 -2.48 16 24 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 25 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.14 3.81 7.61 -2.91 -0.02 3.79 16 30 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 31 H 0.18 0.75 8.06 -2.91 -0.02 0.72 16 32 H 0.17 1.68 5.52 -2.91 -0.02 1.66 16 33 H 0.16 1.80 5.33 -2.39 -0.01 1.78 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -77.70 324.60 6.20 -71.50 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: 1.07 Total: 6.74 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: 3.53 Total: -17.03 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: 0.28 Total: -56.20 kcal Atomic # 8 Polarization: -51.07 SS G_CDS: -0.72 Total: -51.78 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -77.70 6.20 -71.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805722144.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.887 kcal (2) G-P(sol) polarization free energy of solvation -77.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds