Wall clock time and date at job start Mon Mar 30 2020 01:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99875 * 2 1 4 4 H 1.48496 * 109.47085 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46942 * 300.00312 * 3 2 1 6 6 H 1.48502 * 109.46817 * 60.00162 * 3 2 1 7 7 C 1.37872 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99993 * 174.95963 * 7 2 1 9 9 C 1.50705 * 120.00491 * 354.95122 * 7 2 1 10 10 O 1.45196 * 112.84443 * 64.95242 * 9 7 2 11 11 C 1.34905 * 116.99886 * 54.50723 * 10 9 7 12 12 O 1.21619 * 119.99740 * 355.18274 * 11 10 9 13 13 C 1.46463 * 119.99809 * 175.18204 * 11 10 9 14 14 O 1.34957 * 126.02083 * 359.97438 * 13 11 10 15 15 C 1.33923 * 109.37881 * 180.02562 * 14 13 11 16 16 C 1.35183 * 108.77035 * 0.02562 * 15 14 13 17 17 C 1.36574 * 126.01263 * 179.97438 * 13 11 10 18 18 C 1.51076 * 143.66343 * 359.97438 * 17 13 11 19 19 C 1.54379 * 105.32031 * 162.79624 * 18 17 13 20 20 C 1.51145 * 143.43269 * 180.02562 * 16 15 14 21 21 C 1.53775 * 113.69622 * 196.22823 * 9 7 2 22 22 C 1.53777 * 87.08404 * 89.12435 * 21 9 7 23 23 C 1.53784 * 87.08208 * 25.43375 * 22 21 9 24 24 H 0.96999 * 120.00361 * 4.99986 * 1 2 3 25 25 H 1.08001 * 125.61503 * 179.97438 * 15 14 13 26 26 H 1.09000 * 110.28983 * 281.78703 * 18 17 13 27 27 H 1.09002 * 110.29069 * 43.80934 * 18 17 13 28 28 H 1.09002 * 110.76014 * 144.79560 * 19 18 17 29 29 H 1.08996 * 110.76161 * 268.18184 * 19 18 17 30 30 H 1.09010 * 110.28361 * 316.08469 * 20 16 15 31 31 H 1.09004 * 110.28694 * 78.09274 * 20 16 15 32 32 H 1.09003 * 113.61486 * 203.67937 * 21 9 7 33 33 H 1.09003 * 113.61389 * 334.57983 * 21 9 7 34 34 H 1.08994 * 113.61964 * 270.88682 * 22 21 9 35 35 H 1.09000 * 113.69150 * 139.99312 * 22 21 9 36 36 H 1.08998 * 113.61866 * 220.02059 * 23 22 21 37 37 H 1.09005 * 113.69104 * 89.12033 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0814 -1.1958 -0.0827 9 6 1.2555 -2.4967 0.1137 10 8 0.3933 -2.7531 -1.0260 11 6 0.9662 -2.7206 -2.2469 12 8 2.1333 -2.3987 -2.3626 13 6 0.1827 -3.0730 -3.4331 14 8 -1.1142 -3.4464 -3.4455 15 6 -1.4940 -3.6916 -4.7061 16 6 -0.4411 -3.4788 -5.5268 17 6 0.6359 -3.0816 -4.7214 18 6 1.8475 -2.8267 -5.5870 19 6 1.5414 -3.5202 -6.9318 20 6 -0.0037 -3.5096 -6.9733 21 6 2.1470 -3.6910 0.4928 22 6 1.8618 -3.3369 1.9618 23 6 0.5568 -2.6886 1.4702 24 1 -0.4850 0.8368 -0.0732 25 1 -2.4790 -4.0081 -5.0160 26 1 1.9865 -1.7560 -5.7369 27 1 2.7364 -3.2624 -5.1308 28 1 1.9562 -2.9507 -7.7635 29 1 1.9205 -4.5421 -6.9347 30 1 -0.3760 -4.4104 -7.4615 31 1 -0.3616 -2.6222 -7.4954 32 1 1.7385 -4.6547 0.1886 33 1 3.1914 -3.5639 0.2080 34 1 2.5704 -2.6251 2.3850 35 1 1.7040 -4.2068 2.5993 36 1 0.3174 -1.7523 1.9744 37 1 -0.2874 -3.3772 1.4329 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810857964.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:02 Heat of formation + Delta-G solvation = -42.150952 kcal Electronic energy + Delta-G solvation = -21837.953435 eV Core-core repulsion = 18548.100107 eV Total energy + Delta-G solvation = -3289.853328 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.50250 -39.07935 -37.14693 -36.94603 -34.14370 -32.26878 -30.42110 -30.16458 -27.16627 -26.09305 -24.55786 -23.77257 -22.58930 -21.47576 -20.02057 -19.05587 -18.56155 -17.10689 -16.43591 -16.16792 -15.30132 -15.14140 -14.95642 -14.73644 -14.05873 -13.87753 -13.71902 -13.22344 -12.88907 -12.63306 -12.19429 -11.60494 -11.57363 -11.45744 -11.18157 -11.12333 -11.08537 -11.01175 -10.88331 -10.42148 -10.23901 -9.98435 -9.79942 -9.54163 -9.04315 -8.82475 -8.55666 -8.52267 -8.21906 -6.09052 -4.19112 1.51595 2.55244 3.09912 3.27561 3.35237 3.41159 3.93782 4.09764 4.20052 4.38002 4.84816 5.04092 5.12268 5.22470 5.27135 5.45288 5.68605 5.73605 5.78101 5.80123 5.90859 5.94288 6.07771 6.15656 6.23532 6.27217 6.34947 6.46297 6.52115 6.60971 6.65375 6.88073 7.11287 7.24518 7.33728 7.56458 7.73804 7.88203 8.32241 8.83002 9.13975 9.48700 10.95570 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019373 B = 0.006173 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.977999 B = 4534.920586 C = 5073.761063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.073 3.927 3 Si 0.894 3.106 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.505 4.505 8 H 0.070 0.930 9 C 0.236 3.764 10 O -0.337 6.337 11 C 0.545 3.455 12 O -0.475 6.475 13 C -0.017 4.017 14 O -0.140 6.140 15 C -0.003 4.003 16 C -0.223 4.223 17 C -0.126 4.126 18 C -0.052 4.052 19 C -0.118 4.118 20 C -0.042 4.042 21 C -0.162 4.162 22 C -0.129 4.129 23 C -0.106 4.106 24 H 0.263 0.737 25 H 0.206 0.794 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.458 -7.407 -9.932 12.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.133 4.133 3 Si 0.721 3.279 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.543 4.543 8 H 0.088 0.912 9 C 0.202 3.798 10 O -0.253 6.253 11 C 0.387 3.613 12 O -0.364 6.364 13 C -0.067 4.067 14 O -0.035 6.035 15 C -0.073 4.073 16 C -0.224 4.224 17 C -0.128 4.128 18 C -0.089 4.089 19 C -0.155 4.155 20 C -0.080 4.080 21 C -0.200 4.200 22 C -0.167 4.167 23 C -0.144 4.144 24 H 0.072 0.928 25 H 0.222 0.778 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.426 -7.198 -9.559 12.051 hybrid contribution 0.261 1.024 -0.220 1.079 sum -1.164 -6.174 -9.779 11.624 Atomic orbital electron populations 1.70040 1.05861 1.27037 1.47136 1.25073 0.94874 0.99409 0.93900 0.86490 0.80504 0.83284 0.77597 1.19377 1.20936 1.20751 1.20970 0.93599 0.88474 1.51216 0.91185 1.21337 0.86497 0.92413 0.79536 1.86635 1.45137 1.79339 1.14224 1.18903 0.84404 0.75418 0.82609 1.90838 1.15957 1.43119 1.86475 1.20932 0.82556 1.09470 0.93777 1.84319 1.25135 1.65353 1.28695 1.23309 0.99389 1.03899 0.80722 1.21239 0.94405 1.08747 0.98049 1.21074 0.98615 1.01971 0.91154 1.20498 0.94710 1.01360 0.92327 1.22410 0.94911 1.01102 0.97108 1.20418 0.95361 1.01980 0.90208 1.23575 1.00924 0.98682 0.96821 1.22503 0.99305 0.99485 0.95394 1.22891 0.95183 1.00142 0.96166 0.92757 0.77778 0.89929 0.90082 0.90428 0.90986 0.91088 0.90578 0.91994 0.91885 0.90140 0.92888 0.90448 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.97 12.54 55.43 0.69 -24.28 16 2 C 0.07 2.05 5.24 -17.82 -0.09 1.95 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.15 6.29 -34.44 -0.22 -14.37 16 8 H 0.07 2.01 7.82 -52.48 -0.41 1.60 16 9 C 0.24 6.09 0.50 -90.96 -0.05 6.05 16 10 O -0.34 -9.05 9.94 -42.48 -0.42 -9.47 16 11 C 0.54 13.84 7.58 34.04 0.26 14.10 16 12 O -0.47 -12.73 15.23 -19.36 -0.29 -13.02 16 13 C -0.02 -0.36 7.18 -36.87 -0.26 -0.63 16 14 O -0.14 -2.75 10.67 4.67 0.05 -2.70 16 15 C 0.00 -0.05 12.08 29.64 0.36 0.31 16 16 C -0.22 -3.35 6.93 -104.75 -0.73 -4.07 16 17 C -0.13 -2.32 6.66 -104.29 -0.69 -3.01 16 18 C -0.05 -0.79 6.75 -26.98 -0.18 -0.97 16 19 C -0.12 -1.30 7.07 -25.18 -0.18 -1.47 16 20 C -0.04 -0.47 6.76 -26.84 -0.18 -0.65 16 21 C -0.16 -3.61 7.29 -25.92 -0.19 -3.80 16 22 C -0.13 -2.62 7.80 -25.92 -0.20 -2.82 16 23 C -0.11 -2.48 7.19 -25.91 -0.19 -2.67 16 24 H 0.26 7.23 8.32 -40.82 -0.34 6.89 16 25 H 0.21 1.97 8.06 -52.49 -0.42 1.55 16 26 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.06 1.41 8.09 -51.93 -0.42 0.99 16 34 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 1.94 7.63 -51.93 -0.40 1.54 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 315.91 15.07 4.76 4.76 Total: -1.00 -32.33 315.91 -7.79 -40.12 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -5.01 Total: -0.11 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -2.54 Total: -12.06 kcal Atomic # 7 Polarization: -24.97 SS G_CDS: 0.69 Total: -24.28 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.67 Total: -25.20 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.33 -7.79 -40.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857964.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.034 kcal (2) G-P(sol) polarization free energy of solvation -32.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds