Wall clock time and date at job start Mon Mar 30 2020 01:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99875 * 2 1 4 4 H 1.48496 * 109.47085 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46942 * 300.00312 * 3 2 1 6 6 H 1.48502 * 109.46817 * 60.00162 * 3 2 1 7 7 C 1.37872 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99993 * 174.95963 * 7 2 1 9 9 C 1.50705 * 120.00491 * 354.95122 * 7 2 1 10 10 O 1.45196 * 112.84443 * 64.95242 * 9 7 2 11 11 C 1.34905 * 116.99886 * 54.50723 * 10 9 7 12 12 O 1.21619 * 119.99740 * 355.18274 * 11 10 9 13 13 C 1.46463 * 119.99809 * 175.18204 * 11 10 9 14 14 O 1.34957 * 126.02083 * 359.97438 * 13 11 10 15 15 C 1.33923 * 109.37881 * 180.02562 * 14 13 11 16 16 C 1.35183 * 108.77035 * 0.02562 * 15 14 13 17 17 C 1.36574 * 126.01263 * 179.97438 * 13 11 10 18 18 C 1.51076 * 143.66343 * 359.97438 * 17 13 11 19 19 C 1.54379 * 105.32031 * 162.79624 * 18 17 13 20 20 C 1.51145 * 143.43269 * 180.02562 * 16 15 14 21 21 C 1.53775 * 113.69622 * 196.22823 * 9 7 2 22 22 C 1.53777 * 87.08404 * 89.12435 * 21 9 7 23 23 C 1.53784 * 87.08208 * 25.43375 * 22 21 9 24 24 H 0.96999 * 120.00361 * 4.99986 * 1 2 3 25 25 H 1.08001 * 125.61503 * 179.97438 * 15 14 13 26 26 H 1.09000 * 110.28983 * 281.78703 * 18 17 13 27 27 H 1.09002 * 110.29069 * 43.80934 * 18 17 13 28 28 H 1.09002 * 110.76014 * 144.79560 * 19 18 17 29 29 H 1.08996 * 110.76161 * 268.18184 * 19 18 17 30 30 H 1.09010 * 110.28361 * 316.08469 * 20 16 15 31 31 H 1.09004 * 110.28694 * 78.09274 * 20 16 15 32 32 H 1.09003 * 113.61486 * 203.67937 * 21 9 7 33 33 H 1.09003 * 113.61389 * 334.57983 * 21 9 7 34 34 H 1.08994 * 113.61964 * 270.88682 * 22 21 9 35 35 H 1.09000 * 113.69150 * 139.99312 * 22 21 9 36 36 H 1.08998 * 113.61866 * 220.02059 * 23 22 21 37 37 H 1.09005 * 113.69104 * 89.12033 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0814 -1.1958 -0.0827 9 6 1.2555 -2.4967 0.1137 10 8 0.3933 -2.7531 -1.0260 11 6 0.9662 -2.7206 -2.2469 12 8 2.1333 -2.3987 -2.3626 13 6 0.1827 -3.0730 -3.4331 14 8 -1.1142 -3.4464 -3.4455 15 6 -1.4940 -3.6916 -4.7061 16 6 -0.4411 -3.4788 -5.5268 17 6 0.6359 -3.0816 -4.7214 18 6 1.8475 -2.8267 -5.5870 19 6 1.5414 -3.5202 -6.9318 20 6 -0.0037 -3.5096 -6.9733 21 6 2.1470 -3.6910 0.4928 22 6 1.8618 -3.3369 1.9618 23 6 0.5568 -2.6886 1.4702 24 1 -0.4850 0.8368 -0.0732 25 1 -2.4790 -4.0081 -5.0160 26 1 1.9865 -1.7560 -5.7369 27 1 2.7364 -3.2624 -5.1308 28 1 1.9562 -2.9507 -7.7635 29 1 1.9205 -4.5421 -6.9347 30 1 -0.3760 -4.4104 -7.4615 31 1 -0.3616 -2.6222 -7.4954 32 1 1.7385 -4.6547 0.1886 33 1 3.1914 -3.5639 0.2080 34 1 2.5704 -2.6251 2.3850 35 1 1.7040 -4.2068 2.5993 36 1 0.3174 -1.7523 1.9744 37 1 -0.2874 -3.3772 1.4329 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810857964.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:02 Heat of formation + Delta-G solvation = -60.663565 kcal Electronic energy + Delta-G solvation = -21838.756202 eV Core-core repulsion = 18548.100107 eV Total energy + Delta-G solvation = -3290.656095 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.85682 -40.99577 -38.87309 -38.24321 -36.08814 -34.39816 -31.68091 -31.45218 -28.55031 -27.97767 -26.40162 -25.47166 -24.06813 -22.81530 -21.35153 -20.58555 -20.48851 -18.81697 -18.12302 -17.60318 -17.10101 -16.83302 -16.68223 -16.11513 -15.84762 -15.61026 -15.06970 -14.93539 -14.23746 -14.00524 -13.67669 -13.55038 -13.08971 -12.96257 -12.83926 -12.67550 -12.66024 -12.27343 -12.13835 -12.07165 -12.05310 -11.92989 -11.68374 -11.44122 -10.86143 -10.58870 -10.49543 -10.26154 -9.60146 -8.22277 -6.38029 -0.00365 1.30416 1.31408 1.32965 1.45695 1.66092 2.13386 2.33258 2.47890 3.03770 3.10517 3.78718 3.88510 3.97360 4.02936 4.13007 4.17945 4.19700 4.31864 4.45501 4.65733 4.79334 4.81664 4.82716 4.89971 4.94693 4.97981 5.11226 5.11292 5.18916 5.33680 5.34384 5.40693 5.46955 5.59827 5.71178 5.84943 5.93730 6.32067 6.64952 7.18324 7.34107 8.82137 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019373 B = 0.006173 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.977999 B = 4534.920586 C = 5073.761063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.028 3.972 3 Si 0.950 3.050 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.052 0.948 9 C 0.206 3.794 10 O -0.356 6.356 11 C 0.537 3.463 12 O -0.510 6.510 13 C -0.082 4.082 14 O -0.165 6.165 15 C 0.018 3.982 16 C -0.227 4.227 17 C -0.123 4.123 18 C -0.063 4.063 19 C -0.106 4.106 20 C -0.038 4.038 21 C -0.156 4.156 22 C -0.106 4.106 23 C -0.106 4.106 24 H 0.263 0.737 25 H 0.260 0.740 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.053 0.947 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.111 -8.400 -11.992 14.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.175 4.175 3 Si 0.775 3.225 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.553 4.553 8 H 0.070 0.930 9 C 0.173 3.827 10 O -0.272 6.272 11 C 0.382 3.618 12 O -0.401 6.401 13 C -0.132 4.132 14 O -0.061 6.061 15 C -0.050 4.050 16 C -0.228 4.228 17 C -0.125 4.125 18 C -0.101 4.101 19 C -0.143 4.143 20 C -0.075 4.075 21 C -0.194 4.194 22 C -0.144 4.144 23 C -0.144 4.144 24 H 0.072 0.928 25 H 0.276 0.724 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.125 0.875 29 H 0.101 0.899 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.072 0.928 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.075 -8.199 -11.612 14.366 hybrid contribution 0.402 1.266 0.284 1.359 sum -1.673 -6.933 -11.329 13.386 Atomic orbital electron populations 1.70138 1.06960 1.27640 1.48321 1.25758 0.95665 1.02348 0.93693 0.85625 0.79262 0.79682 0.77906 1.19277 1.21107 1.19144 1.21058 0.92879 0.90106 1.51210 0.93005 1.21673 0.87826 0.93064 0.80176 1.86601 1.45702 1.79663 1.15242 1.19439 0.84701 0.74553 0.83131 1.90776 1.17285 1.45066 1.87016 1.20446 0.84109 1.15191 0.93427 1.84267 1.24300 1.66108 1.31413 1.24492 1.01245 1.00401 0.78879 1.21850 0.93010 1.08106 0.99839 1.21712 1.01047 0.99143 0.90606 1.20762 0.93219 1.01713 0.94358 1.22451 0.95300 1.01619 0.94962 1.20585 0.94978 1.04350 0.87560 1.23517 0.99671 0.97960 0.98236 1.22423 0.96864 1.00462 0.94603 1.22876 0.96957 0.99605 0.94938 0.92778 0.72449 0.90244 0.91463 0.87546 0.89883 0.87902 0.88897 0.90688 0.92838 0.90258 0.88746 0.92792 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.42 12.54 21.45 0.27 -53.16 16 2 C 0.03 1.60 5.24 84.65 0.44 2.05 16 3 Si 0.95 45.92 29.54 68.60 2.03 47.94 16 4 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.52 -30.04 6.29 25.60 0.16 -29.88 16 8 H 0.05 3.12 7.82 -2.91 -0.02 3.10 16 9 C 0.21 11.04 0.50 -11.01 -0.01 11.04 16 10 O -0.36 -20.03 9.94 -56.83 -0.56 -20.60 16 11 C 0.54 28.85 7.58 69.96 0.53 29.38 16 12 O -0.51 -29.06 15.23 19.45 0.30 -28.76 16 13 C -0.08 -3.70 7.18 24.02 0.17 -3.53 16 14 O -0.16 -6.51 10.67 -5.20 -0.06 -6.57 16 15 C 0.02 0.50 12.08 67.12 0.81 1.31 16 16 C -0.23 -6.20 6.93 -19.95 -0.14 -6.34 16 17 C -0.12 -4.51 6.66 -19.65 -0.13 -4.64 16 18 C -0.06 -1.89 6.75 30.44 0.21 -1.69 16 19 C -0.11 -1.96 7.07 31.60 0.22 -1.74 16 20 C -0.04 -0.67 6.76 30.52 0.21 -0.46 16 21 C -0.16 -7.05 7.29 31.12 0.23 -6.83 16 22 C -0.11 -4.21 7.80 31.12 0.24 -3.97 16 23 C -0.11 -5.04 7.19 31.12 0.22 -4.81 16 24 H 0.26 14.94 8.32 -92.71 -0.77 14.17 16 25 H 0.26 3.70 8.06 -2.91 -0.02 3.68 16 26 H 0.08 2.39 8.14 -2.39 -0.02 2.38 16 27 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 33 H 0.05 2.47 8.09 -2.39 -0.02 2.45 16 34 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 35 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 36 H 0.05 2.78 7.63 -2.39 -0.02 2.76 16 37 H 0.07 3.10 8.14 -2.38 -0.02 3.08 16 Total: -1.00 -75.69 315.91 6.22 -69.48 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 1.07 Total: 11.78 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: 3.17 Total: -20.12 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: 0.27 Total: -53.16 kcal Atomic # 8 Polarization: -55.60 SS G_CDS: -0.32 Total: -55.92 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -75.69 6.22 -69.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857964.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.813 kcal (2) G-P(sol) polarization free energy of solvation -75.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds