Wall clock time and date at job start Mon Mar 30 2020 01:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99796 * 2 1 4 4 H 1.48504 * 109.46995 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47479 * 300.00010 * 3 2 1 6 6 H 1.48504 * 109.46952 * 60.00208 * 3 2 1 7 7 C 1.37872 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99582 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00169 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47126 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47332 * 179.97438 * 10 9 7 12 12 O 1.20828 * 119.99662 * 359.97438 * 11 10 9 13 13 O 1.34224 * 120.00225 * 179.97438 * 11 10 9 14 14 C 1.45194 * 117.00062 * 180.02562 * 13 11 10 15 15 C 1.50708 * 109.47441 * 180.02562 * 14 13 11 16 16 C 1.38261 * 119.97948 * 270.02685 * 15 14 13 17 17 C 1.38295 * 120.04146 * 179.97438 * 16 15 14 18 18 C 1.37831 * 119.96871 * 359.96675 * 17 16 15 19 19 C 1.38773 * 120.01371 * 0.02562 * 18 17 16 20 20 C 1.37967 * 120.01385 * 0.02562 * 19 18 17 21 21 C 1.51082 * 107.29752 * 180.02562 * 19 18 17 22 22 O 1.43951 * 105.95349 * 342.32532 * 21 19 18 23 23 C 1.43941 * 104.94972 * 28.44560 * 22 21 19 24 24 H 0.96997 * 119.99969 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47727 * 59.99731 * 9 7 2 26 26 H 1.09003 * 109.47036 * 299.99566 * 9 7 2 27 27 H 1.09005 * 109.47005 * 59.99776 * 10 9 7 28 28 H 1.09003 * 109.47070 * 299.99866 * 10 9 7 29 29 H 1.08995 * 109.47327 * 60.00082 * 14 13 11 30 30 H 1.08998 * 109.47432 * 299.99964 * 14 13 11 31 31 H 1.08005 * 119.97619 * 359.97172 * 16 15 14 32 32 H 1.08004 * 120.04045 * 179.97438 * 17 16 15 33 33 H 1.08001 * 120.03936 * 179.97438 * 20 19 18 34 34 H 1.09005 * 110.15139 * 223.20795 * 21 19 18 35 35 H 1.08990 * 110.15650 * 101.44695 * 21 19 18 36 36 H 1.09002 * 110.15431 * 90.68060 * 23 22 21 37 37 H 1.09004 * 110.15347 * 212.36657 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4918 -4.9672 0.0012 12 8 0.2835 -4.9672 0.0020 13 8 2.1629 -6.1296 0.0008 14 6 1.3721 -7.3473 0.0008 15 6 2.2901 -8.5426 0.0010 16 6 2.7115 -9.0902 -1.1966 17 6 3.5543 -10.1867 -1.1980 18 6 3.9749 -10.7332 -0.0046 19 6 3.5525 -10.1838 1.1977 20 6 2.7108 -9.0906 1.1990 21 6 4.1783 -10.9961 2.3072 22 8 4.5998 -12.2327 1.7030 23 6 4.8743 -11.9004 0.3296 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8720 -3.6043 0.8905 28 1 2.8719 -3.6043 -0.8895 29 1 0.7430 -7.3721 -0.8889 30 1 0.7436 -7.3724 0.8910 31 1 2.3821 -8.6615 -2.1316 32 1 3.8830 -10.6148 -2.1335 33 1 2.3815 -8.6630 2.1344 34 1 3.4447 -11.1912 3.0895 35 1 5.0375 -10.4680 2.7205 36 1 5.9197 -11.6141 0.2142 37 1 4.6441 -12.7485 -0.3153 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614867.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:18 Heat of formation + Delta-G solvation = -110.594701 kcal Electronic energy + Delta-G solvation = -19859.018938 eV Core-core repulsion = 16566.197666 eV Total energy + Delta-G solvation = -3292.821271 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.01478 -39.97163 -37.93755 -36.08772 -33.60708 -32.51237 -31.83329 -31.13067 -28.72408 -27.12063 -25.80392 -24.21771 -22.22460 -22.06090 -21.00157 -19.84414 -17.38091 -17.05926 -16.81086 -16.58717 -16.28571 -16.08804 -15.66312 -14.92380 -14.59304 -14.47824 -14.13747 -13.53287 -13.38401 -13.19304 -12.91151 -12.44744 -12.35463 -12.23151 -12.21211 -11.65617 -11.24948 -11.14933 -10.99370 -10.64084 -10.48258 -10.39948 -10.07454 -9.97535 -9.61914 -9.20880 -9.16731 -8.82690 -8.39986 -6.03556 -4.08445 0.77076 1.00642 2.78412 2.94052 3.29472 3.36798 3.40322 3.54113 3.56591 3.83802 4.24544 4.42442 4.51588 4.61087 4.86917 4.97602 5.01973 5.04074 5.15057 5.19326 5.26615 5.32027 5.35409 5.51631 5.64360 5.71770 5.93755 5.95853 6.09485 6.17246 6.22864 6.32711 6.55715 6.60878 6.89489 7.64567 7.70918 7.95909 8.22385 8.37966 8.98907 9.55825 11.07510 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.039273 B = 0.002656 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.789803 B =10539.056087 C =10726.312250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.032 3.968 10 C -0.103 4.103 11 C 0.456 3.544 12 O -0.505 6.505 13 O -0.361 6.361 14 C 0.104 3.896 15 C -0.082 4.082 16 C -0.089 4.089 17 C -0.095 4.095 18 C -0.128 4.128 19 C -0.137 4.137 20 C -0.069 4.069 21 C 0.092 3.908 22 O -0.362 6.362 23 C 0.091 3.909 24 H 0.261 0.739 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.754 -23.357 0.239 24.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.140 4.140 11 C 0.300 3.700 12 O -0.391 6.391 13 O -0.279 6.279 14 C 0.030 3.970 15 C -0.082 4.082 16 C -0.107 4.107 17 C -0.113 4.113 18 C -0.129 4.129 19 C -0.137 4.137 20 C -0.087 4.087 21 C 0.015 3.985 22 O -0.281 6.281 23 C 0.015 3.985 24 H 0.071 0.929 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.237 -23.487 0.351 24.892 hybrid contribution 0.207 1.112 -0.148 1.141 sum 8.444 -22.375 0.204 23.916 Atomic orbital electron populations 1.70003 1.06098 1.26674 1.50018 1.25026 0.94864 0.99368 0.95118 0.86484 0.80027 0.83534 0.77631 1.19639 1.20955 1.20956 1.21190 0.93112 0.90617 1.51683 0.92250 1.19030 0.93233 0.89291 0.98916 1.21779 1.00677 0.87528 1.04042 1.24825 0.87979 0.85599 0.71594 1.90641 1.15869 1.87616 1.45006 1.86640 1.41921 1.14508 1.84873 1.21664 0.91581 0.80234 1.03490 1.19563 0.99380 0.96038 0.93268 1.21113 0.96423 0.95230 0.97959 1.20327 0.97904 0.96335 0.96781 1.21099 0.98901 0.98570 0.94294 1.21033 0.99159 0.97593 0.95948 1.20314 0.95799 0.94403 0.98191 1.21755 0.98660 0.83968 0.94068 1.89084 1.87661 1.29435 1.21905 1.21753 0.97496 0.95492 0.83793 0.92885 0.95574 0.95560 0.88934 0.88923 0.90301 0.90393 0.84936 0.85344 0.85257 0.88350 0.90263 0.90355 0.88448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.53 -14.69 9.11 -34.44 -0.31 -15.00 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.85 4.26 -27.88 -0.12 0.73 16 10 C -0.10 -2.08 5.75 -27.88 -0.16 -2.24 16 11 C 0.46 8.88 7.96 36.01 0.29 9.17 16 12 O -0.50 -11.33 15.73 -18.75 -0.29 -11.62 16 13 O -0.36 -5.91 10.20 -39.24 -0.40 -6.31 16 14 C 0.10 1.39 5.59 36.01 0.20 1.59 16 15 C -0.08 -0.95 5.52 -104.59 -0.58 -1.53 16 16 C -0.09 -0.91 9.70 -39.55 -0.38 -1.29 16 17 C -0.10 -0.86 10.03 -39.71 -0.40 -1.26 16 18 C -0.13 -1.22 6.33 -104.38 -0.66 -1.88 16 19 C -0.14 -1.38 6.33 -104.34 -0.66 -2.04 16 20 C -0.07 -0.74 9.70 -39.66 -0.38 -1.12 16 21 C 0.09 0.78 7.63 36.19 0.28 1.06 16 22 O -0.36 -3.57 11.72 -35.23 -0.41 -3.98 16 23 C 0.09 0.72 7.63 36.19 0.28 1.00 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 26 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 27 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 28 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 29 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 30 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 31 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 32 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 33 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 324.23 15.07 4.89 4.89 Total: -1.00 -33.06 324.23 -8.25 -41.31 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -5.03 Total: -3.18 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -2.72 Total: -11.27 kcal Atomic # 7 Polarization: -26.92 SS G_CDS: 0.74 Total: -26.18 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -1.11 Total: -21.91 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.06 -8.25 -41.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614867.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.283 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds