Wall clock time and date at job start Mon Mar 30 2020 01:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99796 * 2 1 4 4 H 1.48504 * 109.46995 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47479 * 300.00010 * 3 2 1 6 6 H 1.48504 * 109.46952 * 60.00208 * 3 2 1 7 7 C 1.37872 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99582 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00169 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47126 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47332 * 179.97438 * 10 9 7 12 12 O 1.20828 * 119.99662 * 359.97438 * 11 10 9 13 13 O 1.34224 * 120.00225 * 179.97438 * 11 10 9 14 14 C 1.45194 * 117.00062 * 180.02562 * 13 11 10 15 15 C 1.50708 * 109.47441 * 180.02562 * 14 13 11 16 16 C 1.38261 * 119.97948 * 270.02685 * 15 14 13 17 17 C 1.38295 * 120.04146 * 179.97438 * 16 15 14 18 18 C 1.37831 * 119.96871 * 359.96675 * 17 16 15 19 19 C 1.38773 * 120.01371 * 0.02562 * 18 17 16 20 20 C 1.37967 * 120.01385 * 0.02562 * 19 18 17 21 21 C 1.51082 * 107.29752 * 180.02562 * 19 18 17 22 22 O 1.43951 * 105.95349 * 342.32532 * 21 19 18 23 23 C 1.43941 * 104.94972 * 28.44560 * 22 21 19 24 24 H 0.96997 * 119.99969 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47727 * 59.99731 * 9 7 2 26 26 H 1.09003 * 109.47036 * 299.99566 * 9 7 2 27 27 H 1.09005 * 109.47005 * 59.99776 * 10 9 7 28 28 H 1.09003 * 109.47070 * 299.99866 * 10 9 7 29 29 H 1.08995 * 109.47327 * 60.00082 * 14 13 11 30 30 H 1.08998 * 109.47432 * 299.99964 * 14 13 11 31 31 H 1.08005 * 119.97619 * 359.97172 * 16 15 14 32 32 H 1.08004 * 120.04045 * 179.97438 * 17 16 15 33 33 H 1.08001 * 120.03936 * 179.97438 * 20 19 18 34 34 H 1.09005 * 110.15139 * 223.20795 * 21 19 18 35 35 H 1.08990 * 110.15650 * 101.44695 * 21 19 18 36 36 H 1.09002 * 110.15431 * 90.68060 * 23 22 21 37 37 H 1.09004 * 110.15347 * 212.36657 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4918 -4.9672 0.0012 12 8 0.2835 -4.9672 0.0020 13 8 2.1629 -6.1296 0.0008 14 6 1.3721 -7.3473 0.0008 15 6 2.2901 -8.5426 0.0010 16 6 2.7115 -9.0902 -1.1966 17 6 3.5543 -10.1867 -1.1980 18 6 3.9749 -10.7332 -0.0046 19 6 3.5525 -10.1838 1.1977 20 6 2.7108 -9.0906 1.1990 21 6 4.1783 -10.9961 2.3072 22 8 4.5998 -12.2327 1.7030 23 6 4.8743 -11.9004 0.3296 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8720 -3.6043 0.8905 28 1 2.8719 -3.6043 -0.8895 29 1 0.7430 -7.3721 -0.8889 30 1 0.7436 -7.3724 0.8910 31 1 2.3821 -8.6615 -2.1316 32 1 3.8830 -10.6148 -2.1335 33 1 2.3815 -8.6630 2.1344 34 1 3.4447 -11.1912 3.0895 35 1 5.0375 -10.4680 2.7205 36 1 5.9197 -11.6141 0.2142 37 1 4.6441 -12.7485 -0.3153 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812614867.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:18 Heat of formation + Delta-G solvation = -129.781750 kcal Electronic energy + Delta-G solvation = -19859.850951 eV Core-core repulsion = 16566.197666 eV Total energy + Delta-G solvation = -3293.653284 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.81026 -41.37094 -38.79311 -37.46539 -35.65277 -33.49554 -32.98110 -32.54920 -29.54017 -28.34501 -27.35749 -25.10488 -24.00667 -22.74979 -21.85597 -21.49181 -19.10405 -18.19984 -17.91299 -17.63142 -17.36391 -17.22876 -16.80546 -16.47378 -16.02477 -15.36268 -15.18456 -14.74231 -14.44365 -14.25059 -14.14130 -13.76389 -13.57140 -13.45552 -13.17515 -13.10689 -12.86237 -12.50095 -12.41063 -12.02757 -11.96878 -11.75746 -11.69540 -11.46436 -11.27513 -11.07469 -10.58956 -9.94547 -9.58697 -8.20474 -6.34096 -0.04014 0.26018 1.22023 1.43533 1.44325 1.57789 1.74586 2.42550 2.64946 2.92904 3.09980 3.13534 3.55919 3.61892 3.86930 3.96866 4.01897 4.24739 4.34139 4.39228 4.43149 4.44473 4.47521 4.49456 4.57184 4.73520 4.81298 4.91158 4.97873 5.18372 5.24683 5.35083 5.43346 5.47334 5.55100 5.65498 5.80548 5.82941 6.12957 6.77487 6.85884 7.36261 8.92397 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.039273 B = 0.002656 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.789803 B =10539.056087 C =10726.312250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.974 3.026 4 H -0.254 1.254 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.543 4.543 8 H 0.077 0.923 9 C 0.038 3.962 10 C -0.094 4.094 11 C 0.466 3.534 12 O -0.543 6.543 13 O -0.353 6.353 14 C 0.102 3.898 15 C -0.101 4.101 16 C -0.096 4.096 17 C -0.095 4.095 18 C -0.132 4.132 19 C -0.149 4.149 20 C -0.079 4.079 21 C 0.091 3.909 22 O -0.380 6.380 23 C 0.089 3.911 24 H 0.264 0.736 25 H -0.009 1.009 26 H -0.010 1.010 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.144 0.856 32 H 0.157 0.843 33 H 0.135 0.865 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.231 -24.171 -0.083 26.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.798 3.202 4 H -0.177 1.177 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.580 4.580 8 H 0.095 0.905 9 C 0.000 4.000 10 C -0.131 4.131 11 C 0.312 3.688 12 O -0.432 6.432 13 O -0.270 6.270 14 C 0.029 3.971 15 C -0.101 4.101 16 C -0.114 4.114 17 C -0.113 4.113 18 C -0.132 4.132 19 C -0.149 4.149 20 C -0.097 4.097 21 C 0.015 3.985 22 O -0.299 6.299 23 C 0.013 3.987 24 H 0.073 0.927 25 H 0.009 0.991 26 H 0.009 0.991 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.162 0.838 32 H 0.175 0.825 33 H 0.153 0.847 34 H 0.127 0.873 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.751 -24.334 0.029 26.603 hybrid contribution -0.558 1.219 -0.053 1.342 sum 10.193 -23.114 -0.023 25.262 Atomic orbital electron populations 1.70163 1.08214 1.27879 1.51330 1.26098 0.95739 1.03866 0.94548 0.85265 0.79297 0.78078 0.77567 1.17694 1.20602 1.20636 1.21670 0.94101 0.91286 1.50981 0.90476 1.18810 0.93692 0.91925 0.95534 1.21525 0.99349 0.86029 1.06234 1.24509 0.87170 0.86405 0.70745 1.90634 1.17421 1.88265 1.46924 1.86597 1.41788 1.14577 1.84034 1.21880 0.92028 0.79456 1.03731 1.19479 1.00436 0.95831 0.94362 1.21335 0.96470 0.95646 0.97903 1.20623 0.97045 0.95669 0.97914 1.21454 0.98671 0.98828 0.94287 1.21264 0.99090 0.97520 0.97064 1.20427 0.96115 0.94902 0.98248 1.21866 0.99309 0.83535 0.93814 1.89064 1.87831 1.30095 1.22904 1.21944 0.97934 0.95583 0.83231 0.92745 0.99082 0.99113 0.86688 0.86611 0.89998 0.90370 0.83837 0.82546 0.84691 0.87302 0.89126 0.88821 0.86623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.05 13.29 21.45 0.28 -57.77 16 2 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 3 Si 0.97 43.56 29.54 68.60 2.03 45.58 16 4 H -0.25 -10.49 7.11 99.48 0.71 -9.79 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.54 -30.18 9.11 25.60 0.23 -29.94 16 8 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 9 C 0.04 2.03 4.26 29.85 0.13 2.16 16 10 C -0.09 -3.77 5.75 29.85 0.17 -3.60 16 11 C 0.47 18.21 7.96 71.24 0.57 18.78 16 12 O -0.54 -25.11 15.73 21.96 0.35 -24.77 16 13 O -0.35 -11.29 10.20 -51.36 -0.52 -11.82 16 14 C 0.10 2.71 5.59 71.24 0.40 3.11 16 15 C -0.10 -2.25 5.52 -19.84 -0.11 -2.36 16 16 C -0.10 -1.80 9.70 22.29 0.22 -1.58 16 17 C -0.09 -1.48 10.03 22.19 0.22 -1.26 16 18 C -0.13 -2.22 6.33 -19.71 -0.12 -2.35 16 19 C -0.15 -2.78 6.33 -19.68 -0.12 -2.91 16 20 C -0.08 -1.62 9.70 22.22 0.22 -1.41 16 21 C 0.09 1.39 7.63 71.36 0.54 1.94 16 22 O -0.38 -6.74 11.72 -148.98 -1.75 -8.48 16 23 C 0.09 1.18 7.63 71.36 0.54 1.72 16 24 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 25 H -0.01 -0.56 8.10 -2.39 -0.02 -0.58 16 26 H -0.01 -0.58 8.10 -2.39 -0.02 -0.60 16 27 H 0.12 4.10 8.14 -2.38 -0.02 4.08 16 28 H 0.12 4.11 8.14 -2.39 -0.02 4.09 16 29 H 0.08 2.11 8.08 -2.39 -0.02 2.09 16 30 H 0.08 2.05 8.08 -2.39 -0.02 2.03 16 31 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 32 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 34 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -72.29 324.23 4.79 -67.50 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 1.06 Total: 7.27 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: 3.34 Total: -17.52 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: 0.28 Total: -57.77 kcal Atomic # 8 Polarization: -43.14 SS G_CDS: -1.92 Total: -45.07 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -72.29 4.79 -67.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614867.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.284 kcal (2) G-P(sol) polarization free energy of solvation -72.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds