Wall clock time and date at job start Mon Mar 30 2020 02:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46803 * 2 1 4 4 O 1.45196 * 109.46866 * 120.00072 * 2 1 3 5 5 C 1.34227 * 117.00042 * 269.99829 * 4 2 1 6 6 O 1.20828 * 120.00114 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99855 * 180.02562 * 5 4 2 8 8 C 1.53011 * 109.47159 * 180.02562 * 7 5 4 9 9 C 1.50691 * 109.47172 * 180.02562 * 8 7 5 10 10 H 1.07998 * 120.00342 * 359.97438 * 9 8 7 11 11 C 1.37882 * 120.00233 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99650 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00452 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47045 * 89.99682 * 13 11 9 15 15 H 1.48500 * 109.47373 * 210.00410 * 13 11 9 16 16 H 1.48503 * 109.46837 * 329.99983 * 13 11 9 17 17 C 1.50698 * 109.47113 * 240.00392 * 2 1 3 18 18 O 1.21252 * 119.99712 * 259.99987 * 17 2 1 19 19 C 1.47166 * 120.00376 * 79.99922 * 17 2 1 20 20 C 1.39847 * 120.17168 * 180.02562 * 19 17 2 21 21 C 1.37886 * 119.82116 * 180.02562 * 20 19 17 22 22 C 1.38406 * 120.17708 * 359.97438 * 21 20 19 23 23 C 1.38403 * 120.34455 * 0.28152 * 22 21 20 24 24 C 1.37892 * 120.17250 * 359.47904 * 23 22 21 25 25 H 1.09008 * 109.47188 * 59.99780 * 1 2 3 26 26 H 1.08997 * 109.46880 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47275 * 299.99702 * 1 2 3 28 28 H 1.08995 * 109.47687 * 299.99876 * 7 5 4 29 29 H 1.08999 * 109.47514 * 60.00284 * 7 5 4 30 30 H 1.09003 * 109.46689 * 300.00044 * 8 7 5 31 31 H 1.08999 * 109.46809 * 59.99689 * 8 7 5 32 32 H 0.96998 * 120.00248 * 180.02562 * 12 11 9 33 33 H 1.07992 * 120.09103 * 359.97438 * 20 19 17 34 34 H 1.08001 * 119.91179 * 179.97438 * 21 20 19 35 35 H 1.08002 * 119.82516 * 179.97438 * 22 21 20 36 36 H 1.08005 * 119.91196 * 179.72500 * 23 22 21 37 37 H 1.07999 * 120.08484 * 180.23018 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 0.0640 2.2811 6 8 1.9974 1.2517 2.2506 7 6 2.7192 -0.5771 3.5491 8 6 2.8632 0.4889 4.6373 9 6 3.3659 -0.1520 5.9050 10 1 3.5626 -1.2136 5.9322 11 6 3.5747 0.6167 7.0304 12 7 3.3346 1.9094 6.9975 13 14 4.1971 -0.1778 8.6022 14 1 5.6818 -0.1547 8.6141 15 1 3.6808 0.5732 9.7747 16 1 3.7234 -1.5838 8.6672 17 6 2.0324 -0.7103 -1.2305 18 8 2.4064 -1.8613 -1.1558 19 6 2.0690 -0.0071 -2.5227 20 6 2.5340 -0.6631 -3.6670 21 6 2.5657 0.0029 -4.8739 22 6 2.1384 1.3169 -4.9550 23 6 1.6818 1.9745 -3.8260 24 6 1.6393 1.3207 -2.6127 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 2.0105 -1.3373 3.8773 29 1 3.6883 -1.0401 3.3632 30 1 3.5718 1.2494 4.3093 31 1 1.8939 0.9515 4.8231 32 1 3.4818 2.4504 7.7890 33 1 2.8681 -1.6881 -3.6053 34 1 2.9249 -0.5021 -5.7584 35 1 2.1661 1.8332 -5.9032 36 1 1.3543 3.0013 -3.8964 37 1 1.2793 1.8342 -1.7334 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812615769.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:36 Heat of formation + Delta-G solvation = -109.010654 kcal Electronic energy + Delta-G solvation = -20223.728749 eV Core-core repulsion = 16930.976168 eV Total energy + Delta-G solvation = -3292.752582 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.72351 -39.71875 -38.35081 -36.19616 -33.60711 -32.90392 -31.36153 -31.23190 -30.64085 -26.23003 -25.56097 -23.59552 -22.88491 -21.90026 -20.03762 -19.76016 -17.87903 -17.21821 -16.74138 -16.11264 -16.00266 -15.79562 -15.04738 -14.81757 -14.59337 -14.45941 -14.05484 -13.91010 -13.48026 -12.97604 -12.84849 -12.56012 -12.31820 -12.17998 -12.06443 -11.64652 -11.42936 -11.21616 -10.96023 -10.68789 -10.61504 -10.05735 -10.01097 -9.80334 -9.52165 -9.38648 -9.35359 -9.18109 -8.37866 -6.01888 -4.06552 0.31068 0.98612 2.08135 2.73883 2.79682 3.32121 3.38217 3.41459 3.43837 3.81699 4.40018 4.44556 4.55063 4.63046 4.76553 4.83629 4.91409 5.00090 5.09579 5.20444 5.33679 5.43374 5.54463 5.61109 5.64370 5.91297 5.93452 6.02079 6.04741 6.12178 6.20226 6.48159 6.58685 6.88053 7.24606 7.65834 7.72294 7.97375 8.21314 8.37665 9.00393 9.57522 11.09149 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.039243 B = 0.002987 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.329197 B = 9372.034051 C = 9599.934729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.040 3.960 3 H 0.110 0.890 4 O -0.343 6.343 5 C 0.457 3.543 6 O -0.504 6.504 7 C -0.103 4.103 8 C 0.034 3.966 9 C -0.528 4.528 10 H 0.059 0.941 11 C 0.059 3.941 12 N -0.890 5.890 13 Si 0.896 3.104 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.273 1.273 17 C 0.399 3.601 18 O -0.425 6.425 19 C -0.162 4.162 20 C -0.060 4.060 21 C -0.133 4.133 22 C -0.089 4.089 23 C -0.131 4.131 24 C -0.074 4.074 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.262 0.738 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.928 -1.716 -24.219 24.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.017 4.017 3 H 0.128 0.872 4 O -0.261 6.261 5 C 0.301 3.699 6 O -0.390 6.390 7 C -0.140 4.140 8 C -0.003 4.003 9 C -0.566 4.566 10 H 0.077 0.923 11 C -0.143 4.143 12 N -0.528 5.528 13 Si 0.724 3.276 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.198 1.198 17 C 0.274 3.726 18 O -0.297 6.297 19 C -0.163 4.163 20 C -0.078 4.078 21 C -0.151 4.151 22 C -0.107 4.107 23 C -0.148 4.148 24 C -0.092 4.092 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.153 0.847 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.805 -1.810 -24.091 24.632 hybrid contribution 0.289 -0.056 0.795 0.847 sum -4.516 -1.865 -23.297 23.804 Atomic orbital electron populations 1.22112 0.91794 1.03972 1.04136 1.22850 0.96472 0.98542 0.83788 0.87212 1.86741 1.77423 1.42293 1.19666 1.24946 0.73597 0.86409 0.84981 1.90616 1.47826 1.16864 1.83736 1.21800 1.01909 1.02061 0.88273 1.19026 0.98567 0.92424 0.90327 1.21158 1.44983 0.94778 0.95720 0.92270 1.25020 0.95474 0.94830 0.99007 1.69991 1.48295 1.05034 1.29517 0.86534 0.79034 0.79367 0.82711 1.20591 1.21182 1.19771 1.22330 0.74471 0.87483 0.88302 1.90541 1.34496 1.17546 1.87104 1.20344 1.05609 0.95762 0.94633 1.21430 0.94743 1.00229 0.91378 1.21175 1.01004 0.95121 0.97771 1.21470 0.95853 0.94637 0.98739 1.21190 1.00680 1.00495 0.92484 1.21608 0.95855 0.93132 0.98651 0.90343 0.90955 0.90137 0.88758 0.88798 0.95576 0.95532 0.92852 0.84693 0.85227 0.85446 0.85082 0.84702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.42 37.16 0.35 -1.53 16 2 C 0.04 0.56 2.17 -27.88 -0.06 0.50 16 3 H 0.11 1.51 6.04 -51.93 -0.31 1.20 16 4 O -0.34 -6.10 9.49 -45.65 -0.43 -6.53 16 5 C 0.46 9.13 7.93 36.01 0.29 9.42 16 6 O -0.50 -11.13 15.20 -18.75 -0.29 -11.42 16 7 C -0.10 -2.15 5.75 -27.88 -0.16 -2.31 16 8 C 0.03 0.89 4.26 -27.88 -0.12 0.77 16 9 C -0.53 -14.85 9.11 -34.44 -0.31 -15.17 16 10 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 13 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 C 0.40 5.42 6.38 -30.69 -0.20 5.23 16 18 O -0.42 -6.96 16.61 -13.18 -0.22 -7.18 16 19 C -0.16 -1.77 5.87 -105.07 -0.62 -2.38 16 20 C -0.06 -0.58 9.60 -39.11 -0.38 -0.95 16 21 C -0.13 -0.99 10.03 -39.65 -0.40 -1.38 16 22 C -0.09 -0.59 10.04 -39.46 -0.40 -0.99 16 23 C -0.13 -0.95 10.03 -39.65 -0.40 -1.35 16 24 C -0.07 -0.66 8.87 -39.10 -0.35 -1.01 16 25 H 0.08 0.67 7.29 -51.92 -0.38 0.29 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 29 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 30 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 31 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.14 1.28 7.65 -52.49 -0.40 0.88 16 34 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 36 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 37 H 0.14 1.07 6.17 -52.49 -0.32 0.74 16 LS Contribution 326.51 15.07 4.92 4.92 Total: -1.00 -33.83 326.51 -7.90 -41.73 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -4.76 Total: -2.23 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -2.84 Total: -9.57 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 0.74 Total: -26.27 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.94 Total: -25.13 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.83 -7.90 -41.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615769.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.279 kcal (2) G-P(sol) polarization free energy of solvation -33.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds