Wall clock time and date at job start Mon Mar 30 2020 02:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46803 * 2 1 4 4 O 1.45196 * 109.46866 * 120.00072 * 2 1 3 5 5 C 1.34227 * 117.00042 * 269.99829 * 4 2 1 6 6 O 1.20828 * 120.00114 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99855 * 180.02562 * 5 4 2 8 8 C 1.53011 * 109.47159 * 180.02562 * 7 5 4 9 9 C 1.50691 * 109.47172 * 180.02562 * 8 7 5 10 10 H 1.07998 * 120.00342 * 359.97438 * 9 8 7 11 11 C 1.37882 * 120.00233 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99650 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00452 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47045 * 89.99682 * 13 11 9 15 15 H 1.48500 * 109.47373 * 210.00410 * 13 11 9 16 16 H 1.48503 * 109.46837 * 329.99983 * 13 11 9 17 17 C 1.50698 * 109.47113 * 240.00392 * 2 1 3 18 18 O 1.21252 * 119.99712 * 259.99987 * 17 2 1 19 19 C 1.47166 * 120.00376 * 79.99922 * 17 2 1 20 20 C 1.39847 * 120.17168 * 180.02562 * 19 17 2 21 21 C 1.37886 * 119.82116 * 180.02562 * 20 19 17 22 22 C 1.38406 * 120.17708 * 359.97438 * 21 20 19 23 23 C 1.38403 * 120.34455 * 0.28152 * 22 21 20 24 24 C 1.37892 * 120.17250 * 359.47904 * 23 22 21 25 25 H 1.09008 * 109.47188 * 59.99780 * 1 2 3 26 26 H 1.08997 * 109.46880 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47275 * 299.99702 * 1 2 3 28 28 H 1.08995 * 109.47687 * 299.99876 * 7 5 4 29 29 H 1.08999 * 109.47514 * 60.00284 * 7 5 4 30 30 H 1.09003 * 109.46689 * 300.00044 * 8 7 5 31 31 H 1.08999 * 109.46809 * 59.99689 * 8 7 5 32 32 H 0.96998 * 120.00248 * 180.02562 * 12 11 9 33 33 H 1.07992 * 120.09103 * 359.97438 * 20 19 17 34 34 H 1.08001 * 119.91179 * 179.97438 * 21 20 19 35 35 H 1.08002 * 119.82516 * 179.97438 * 22 21 20 36 36 H 1.08005 * 119.91196 * 179.72500 * 23 22 21 37 37 H 1.07999 * 120.08484 * 180.23018 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 0.0640 2.2811 6 8 1.9974 1.2517 2.2506 7 6 2.7192 -0.5771 3.5491 8 6 2.8632 0.4889 4.6373 9 6 3.3659 -0.1520 5.9050 10 1 3.5626 -1.2136 5.9322 11 6 3.5747 0.6167 7.0304 12 7 3.3346 1.9094 6.9975 13 14 4.1971 -0.1778 8.6022 14 1 5.6818 -0.1547 8.6141 15 1 3.6808 0.5732 9.7747 16 1 3.7234 -1.5838 8.6672 17 6 2.0324 -0.7103 -1.2305 18 8 2.4064 -1.8613 -1.1558 19 6 2.0690 -0.0071 -2.5227 20 6 2.5340 -0.6631 -3.6670 21 6 2.5657 0.0029 -4.8739 22 6 2.1384 1.3169 -4.9550 23 6 1.6818 1.9745 -3.8260 24 6 1.6393 1.3207 -2.6127 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 2.0105 -1.3373 3.8773 29 1 3.6883 -1.0401 3.3632 30 1 3.5718 1.2494 4.3093 31 1 1.8939 0.9515 4.8231 32 1 3.4818 2.4504 7.7890 33 1 2.8681 -1.6881 -3.6053 34 1 2.9249 -0.5021 -5.7584 35 1 2.1661 1.8332 -5.9032 36 1 1.3543 3.0013 -3.8964 37 1 1.2793 1.8342 -1.7334 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812615769.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:35 Heat of formation + Delta-G solvation = -127.382715 kcal Electronic energy + Delta-G solvation = -20224.525422 eV Core-core repulsion = 16930.976168 eV Total energy + Delta-G solvation = -3293.549254 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.98699 -40.88799 -39.23594 -37.69361 -35.66949 -33.99634 -33.06562 -31.98986 -31.58587 -28.13555 -26.60952 -24.85499 -23.80502 -23.19754 -21.51796 -20.90018 -19.30188 -18.42856 -18.23782 -17.55329 -17.44755 -16.66568 -16.48921 -16.11696 -16.05213 -15.35102 -15.18353 -14.88628 -14.57927 -14.30108 -14.17852 -13.96084 -13.53056 -13.44002 -13.27511 -12.88977 -12.82129 -12.58449 -12.52511 -12.09249 -12.03861 -11.94549 -11.76977 -11.52938 -11.31225 -10.80253 -10.58320 -10.02588 -10.00345 -8.20983 -6.34463 -0.47788 0.37492 1.10965 1.18888 1.42040 1.45002 1.49152 1.56776 2.41945 2.73026 2.77914 3.12758 3.59173 3.75569 3.80181 3.85193 3.96343 4.01509 4.21758 4.36639 4.40480 4.41714 4.46194 4.55063 4.58592 4.82497 4.87520 4.96599 5.03025 5.23103 5.30657 5.41039 5.45471 5.46307 5.53660 5.79241 5.90001 6.12174 6.21685 6.70301 6.83407 7.35492 8.91574 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.039243 B = 0.002987 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.329197 B = 9372.034051 C = 9599.934729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.029 3.971 3 H 0.114 0.886 4 O -0.347 6.347 5 C 0.466 3.534 6 O -0.532 6.532 7 C -0.096 4.096 8 C 0.041 3.959 9 C -0.546 4.546 10 H 0.075 0.925 11 C -0.002 4.002 12 N -0.934 5.934 13 Si 0.973 3.027 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.258 1.258 17 C 0.406 3.594 18 O -0.465 6.465 19 C -0.186 4.186 20 C -0.073 4.073 21 C -0.133 4.133 22 C -0.079 4.079 23 C -0.132 4.132 24 C -0.080 4.080 25 H 0.111 0.889 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.115 0.885 29 H 0.111 0.889 30 H -0.008 1.008 31 H -0.005 1.005 32 H 0.265 0.735 33 H 0.127 0.873 34 H 0.155 0.845 35 H 0.161 0.839 36 H 0.157 0.843 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.983 -2.059 -25.815 26.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.027 4.027 3 H 0.131 0.869 4 O -0.264 6.264 5 C 0.311 3.689 6 O -0.420 6.420 7 C -0.133 4.133 8 C 0.004 3.996 9 C -0.584 4.584 10 H 0.093 0.907 11 C -0.200 4.200 12 N -0.573 5.573 13 Si 0.797 3.203 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.182 1.182 17 C 0.284 3.716 18 O -0.340 6.340 19 C -0.187 4.187 20 C -0.092 4.092 21 C -0.150 4.150 22 C -0.096 4.096 23 C -0.149 4.149 24 C -0.098 4.098 25 H 0.129 0.871 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.133 0.867 29 H 0.129 0.871 30 H 0.010 0.990 31 H 0.013 0.987 32 H 0.073 0.927 33 H 0.145 0.855 34 H 0.173 0.827 35 H 0.178 0.822 36 H 0.175 0.825 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.869 -2.168 -25.715 26.262 hybrid contribution 0.279 0.124 1.111 1.152 sum -4.590 -2.044 -24.605 25.113 Atomic orbital electron populations 1.22121 0.89678 1.04406 1.05242 1.23297 0.98305 0.98516 0.82556 0.86880 1.86680 1.77238 1.42324 1.20182 1.24565 0.73065 0.85826 0.85425 1.90603 1.49151 1.17954 1.84341 1.21553 1.03655 1.00622 0.87507 1.18788 0.95733 0.93011 0.92083 1.21627 1.44717 0.95647 0.96392 0.90732 1.26068 0.95541 0.95311 1.03105 1.70145 1.49570 1.06850 1.30767 0.85325 0.78551 0.78825 0.77596 1.19736 1.20939 1.18179 1.22568 0.73065 0.86931 0.89056 1.90522 1.36761 1.19057 1.87686 1.20186 1.08328 0.96728 0.93434 1.21538 0.95245 1.00275 0.92104 1.21495 1.00349 0.95624 0.97577 1.21920 0.93620 0.94193 0.99907 1.21554 0.99924 1.01632 0.91833 1.21758 0.95771 0.92378 0.99893 0.87058 0.90848 0.91142 0.86678 0.87065 0.98953 0.98696 0.92676 0.85464 0.82741 0.82155 0.82511 0.84174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 9.42 71.98 0.68 -2.87 16 2 C 0.03 0.82 2.17 29.85 0.06 0.89 16 3 H 0.11 3.16 6.04 -2.39 -0.01 3.14 16 4 O -0.35 -12.48 9.49 -45.27 -0.43 -12.91 16 5 C 0.47 19.01 7.93 71.24 0.56 19.57 16 6 O -0.53 -24.26 15.20 21.96 0.33 -23.92 16 7 C -0.10 -4.05 5.75 29.85 0.17 -3.88 16 8 C 0.04 2.25 4.26 29.85 0.13 2.37 16 9 C -0.55 -30.91 9.11 25.60 0.23 -30.68 16 10 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16 11 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 12 N -0.93 -57.98 13.29 21.45 0.28 -57.69 16 13 Si 0.97 44.11 29.54 68.60 2.03 46.14 16 14 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 15 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 16 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 17 C 0.41 11.19 6.38 28.03 0.18 11.37 16 18 O -0.46 -15.74 16.61 15.00 0.25 -15.49 16 19 C -0.19 -3.95 5.87 -20.15 -0.12 -4.06 16 20 C -0.07 -1.37 9.60 22.58 0.22 -1.15 16 21 C -0.13 -1.63 10.03 22.23 0.22 -1.41 16 22 C -0.08 -0.76 10.04 22.35 0.22 -0.54 16 23 C -0.13 -1.51 10.03 22.23 0.22 -1.29 16 24 C -0.08 -1.30 8.87 22.58 0.20 -1.10 16 25 H 0.11 1.74 7.29 -2.38 -0.02 1.72 16 26 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.12 4.36 8.14 -2.39 -0.02 4.34 16 29 H 0.11 4.30 8.14 -2.39 -0.02 4.28 16 30 H -0.01 -0.48 8.10 -2.39 -0.02 -0.50 16 31 H -0.01 -0.32 8.10 -2.39 -0.02 -0.34 16 32 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.13 2.47 7.65 -2.91 -0.02 2.45 16 34 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 35 H 0.16 0.53 8.06 -2.91 -0.02 0.50 16 36 H 0.16 0.98 8.06 -2.91 -0.02 0.95 16 37 H 0.14 2.03 6.17 -2.91 -0.02 2.01 16 Total: -1.00 -75.31 326.51 6.98 -68.33 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 1.07 Total: 7.99 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: 3.45 Total: -12.44 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: 0.28 Total: -57.69 kcal Atomic # 8 Polarization: -52.48 SS G_CDS: 0.15 Total: -52.32 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -75.31 6.98 -68.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615769.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.051 kcal (2) G-P(sol) polarization free energy of solvation -75.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds