Wall clock time and date at job start Mon Mar 30 2020 02:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47268 * 2 1 4 4 O 1.45196 * 109.47128 * 239.99540 * 2 1 3 5 5 C 1.34234 * 116.99959 * 90.00244 * 4 2 1 6 6 O 1.20825 * 119.99973 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99897 * 179.97438 * 5 4 2 8 8 C 1.52998 * 109.46883 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.47216 * 180.02562 * 8 7 5 10 10 H 1.07998 * 119.99995 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00403 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99972 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00174 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47285 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47229 * 119.99942 * 13 11 9 16 16 H 1.48499 * 109.46974 * 239.99479 * 13 11 9 17 17 C 1.50704 * 109.46808 * 119.99540 * 2 1 3 18 18 O 1.21256 * 119.99507 * 105.00147 * 17 2 1 19 19 C 1.47166 * 120.00398 * 284.99858 * 17 2 1 20 20 C 1.39846 * 120.17201 * 179.97438 * 19 17 2 21 21 C 1.37891 * 119.82489 * 179.75025 * 20 19 17 22 22 C 1.38412 * 120.16717 * 0.25583 * 21 20 19 23 23 C 1.38402 * 120.34971 * 359.97438 * 22 21 20 24 24 C 1.37883 * 120.17569 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.47409 * 300.00505 * 1 2 3 26 26 H 1.09004 * 109.46921 * 60.00496 * 1 2 3 27 27 H 1.09000 * 109.47654 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47560 * 300.00414 * 7 5 4 29 29 H 1.09002 * 109.46556 * 60.00443 * 7 5 4 30 30 H 1.08999 * 109.47294 * 300.00496 * 8 7 5 31 31 H 1.08998 * 109.47355 * 60.00027 * 8 7 5 32 32 H 0.96995 * 120.00429 * 180.02562 * 12 11 9 33 33 H 1.08002 * 120.09198 * 0.03340 * 20 19 17 34 34 H 1.07994 * 119.91964 * 180.28383 * 21 20 19 35 35 H 1.08001 * 119.81783 * 180.02562 * 22 21 20 36 36 H 1.08002 * 119.90871 * 180.02562 * 23 22 21 37 37 H 1.07998 * 120.08969 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6846 -1.1855 5 6 2.2171 0.0639 -2.2811 6 8 1.9983 1.2518 -2.2504 7 6 2.7193 -0.5773 -3.5491 8 6 2.8645 0.4889 -4.6368 9 6 3.3661 -0.1523 -5.9050 10 1 3.5622 -1.2139 -5.9323 11 6 3.5757 0.6166 -7.0301 12 7 3.3374 1.9095 -6.9967 13 14 4.1981 -0.1781 -8.6018 14 1 4.3872 -1.6340 -8.3791 15 1 3.2082 0.0324 -9.6886 16 1 5.4942 0.4358 -8.9871 17 6 2.0322 -0.7103 1.2306 18 8 2.4906 -1.8293 1.1400 19 6 1.9665 -0.0460 2.5421 20 6 2.4311 -0.7021 3.6864 21 6 2.3709 -0.0710 4.9109 22 6 1.8475 1.2065 5.0099 23 6 1.3813 1.8606 3.8828 24 6 1.4346 1.2428 2.6512 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 3.6884 -1.0403 -3.3631 29 1 2.0104 -1.3374 -3.8772 30 1 1.8956 0.9523 -4.8229 31 1 3.5735 1.2488 -4.3084 32 1 3.4845 2.4504 -7.7883 33 1 2.8403 -1.6988 3.6106 34 1 2.7335 -0.5744 5.7948 35 1 1.8034 1.6957 5.9718 36 1 0.9746 2.8575 3.9682 37 1 1.0708 1.7547 1.7726 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812615770.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:37 Heat of formation + Delta-G solvation = -108.890699 kcal Electronic energy + Delta-G solvation = -20221.398432 eV Core-core repulsion = 16928.651052 eV Total energy + Delta-G solvation = -3292.747380 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.72597 -39.71978 -38.34562 -36.19578 -33.60788 -32.95572 -31.36448 -31.22499 -30.60460 -26.22939 -25.56023 -23.58833 -22.89381 -21.90911 -20.04329 -19.76314 -17.86102 -17.21351 -16.75048 -16.12630 -16.01903 -15.77762 -15.04135 -14.83016 -14.59905 -14.45555 -14.05198 -13.93807 -13.47987 -12.95387 -12.84733 -12.56666 -12.32362 -12.19031 -12.06028 -11.61823 -11.44310 -11.21167 -10.97721 -10.67969 -10.60293 -10.06095 -10.00895 -9.80374 -9.52396 -9.38932 -9.35602 -9.16446 -8.38237 -6.01953 -4.06546 0.31013 0.98120 2.09278 2.73238 2.79418 3.31145 3.38519 3.42604 3.43364 3.81628 4.39803 4.44604 4.54575 4.62789 4.76474 4.82363 4.92029 4.99231 5.09107 5.19824 5.33725 5.43150 5.53937 5.61152 5.63656 5.90849 5.92989 6.02012 6.04336 6.12387 6.20478 6.47726 6.58915 6.88292 7.24925 7.66197 7.72360 7.97444 8.21481 8.37800 9.00645 9.57635 11.09132 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.041318 B = 0.002966 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.502562 B = 9438.485220 C = 9687.086099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.040 3.960 3 H 0.111 0.889 4 O -0.343 6.343 5 C 0.457 3.543 6 O -0.504 6.504 7 C -0.103 4.103 8 C 0.033 3.967 9 C -0.527 4.527 10 H 0.060 0.940 11 C 0.058 3.942 12 N -0.890 5.890 13 Si 0.896 3.104 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.284 1.284 17 C 0.399 3.601 18 O -0.425 6.425 19 C -0.162 4.162 20 C -0.060 4.060 21 C -0.133 4.133 22 C -0.089 4.089 23 C -0.131 4.131 24 C -0.075 4.075 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.261 0.739 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.464 -1.932 24.327 25.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.017 4.017 3 H 0.129 0.871 4 O -0.261 6.261 5 C 0.301 3.699 6 O -0.391 6.391 7 C -0.140 4.140 8 C -0.004 4.004 9 C -0.565 4.565 10 H 0.078 0.922 11 C -0.144 4.144 12 N -0.528 5.528 13 Si 0.723 3.277 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.210 1.210 17 C 0.274 3.726 18 O -0.297 6.297 19 C -0.163 4.163 20 C -0.078 4.078 21 C -0.151 4.151 22 C -0.107 4.107 23 C -0.149 4.149 24 C -0.093 4.093 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.153 0.847 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.287 -2.011 24.194 24.847 hybrid contribution 0.268 -0.048 -0.799 0.844 sum -5.019 -2.059 23.396 24.017 Atomic orbital electron populations 1.22140 0.91816 1.03981 1.04166 1.22836 0.96426 0.98573 0.83820 0.87122 1.86743 1.77424 1.42269 1.19652 1.24947 0.73585 0.86410 0.84989 1.90616 1.47844 1.16858 1.83741 1.21797 1.01911 1.02046 0.88274 1.19031 0.98578 0.92432 0.90353 1.21195 1.44883 0.94785 0.95682 0.92216 1.25019 0.95491 0.94823 0.99026 1.69999 1.48452 1.05011 1.29372 0.86482 0.78483 0.79537 0.83176 1.19626 1.20959 1.20966 1.22341 0.75083 0.86702 0.88514 1.90545 1.32873 1.18434 1.87837 1.20337 1.05143 0.96424 0.94385 1.21433 0.95105 0.99886 0.91360 1.21178 1.00722 0.95541 0.97616 1.21470 0.95730 0.94652 0.98860 1.21185 1.00787 1.00520 0.92367 1.21616 0.95702 0.93385 0.98607 0.90283 0.90146 0.90968 0.88791 0.88765 0.95536 0.95563 0.92910 0.84690 0.85226 0.85452 0.85091 0.84676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.33 37.16 0.35 -1.52 16 2 C 0.04 0.56 2.16 -27.88 -0.06 0.50 16 3 H 0.11 1.53 6.35 -51.93 -0.33 1.20 16 4 O -0.34 -6.09 9.46 -45.78 -0.43 -6.53 16 5 C 0.46 9.14 7.93 36.01 0.29 9.43 16 6 O -0.50 -11.15 15.20 -18.75 -0.28 -11.44 16 7 C -0.10 -2.15 5.75 -27.88 -0.16 -2.31 16 8 C 0.03 0.88 4.26 -27.88 -0.12 0.76 16 9 C -0.53 -14.83 9.11 -34.44 -0.31 -15.15 16 10 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 13 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 14 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 C 0.40 5.41 6.42 -30.68 -0.20 5.21 16 18 O -0.42 -6.99 16.56 -13.60 -0.23 -7.21 16 19 C -0.16 -1.75 5.86 -105.07 -0.62 -2.36 16 20 C -0.06 -0.57 9.60 -39.11 -0.38 -0.95 16 21 C -0.13 -0.98 10.03 -39.64 -0.40 -1.38 16 22 C -0.09 -0.59 10.04 -39.46 -0.40 -0.98 16 23 C -0.13 -0.93 10.03 -39.65 -0.40 -1.33 16 24 C -0.07 -0.66 8.64 -39.11 -0.34 -1.00 16 25 H 0.08 0.67 6.63 -51.93 -0.34 0.32 16 26 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 29 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 30 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 31 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.14 1.28 7.65 -52.49 -0.40 0.88 16 34 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 36 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 37 H 0.14 1.04 5.93 -52.49 -0.31 0.73 16 LS Contribution 325.54 15.07 4.91 4.91 Total: -1.00 -33.91 325.54 -7.89 -41.79 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -4.73 Total: -2.29 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -2.84 Total: -9.50 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 0.74 Total: -26.27 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.94 Total: -25.18 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.91 -7.89 -41.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615770.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.098 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds