Wall clock time and date at job start Mon Mar 30 2020 02:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47268 * 2 1 4 4 O 1.45196 * 109.47128 * 239.99540 * 2 1 3 5 5 C 1.34234 * 116.99959 * 90.00244 * 4 2 1 6 6 O 1.20825 * 119.99973 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99897 * 179.97438 * 5 4 2 8 8 C 1.52998 * 109.46883 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.47216 * 180.02562 * 8 7 5 10 10 H 1.07998 * 119.99995 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00403 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99972 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00174 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47285 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47229 * 119.99942 * 13 11 9 16 16 H 1.48499 * 109.46974 * 239.99479 * 13 11 9 17 17 C 1.50704 * 109.46808 * 119.99540 * 2 1 3 18 18 O 1.21256 * 119.99507 * 105.00147 * 17 2 1 19 19 C 1.47166 * 120.00398 * 284.99858 * 17 2 1 20 20 C 1.39846 * 120.17201 * 179.97438 * 19 17 2 21 21 C 1.37891 * 119.82489 * 179.75025 * 20 19 17 22 22 C 1.38412 * 120.16717 * 0.25583 * 21 20 19 23 23 C 1.38402 * 120.34971 * 359.97438 * 22 21 20 24 24 C 1.37883 * 120.17569 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.47409 * 300.00505 * 1 2 3 26 26 H 1.09004 * 109.46921 * 60.00496 * 1 2 3 27 27 H 1.09000 * 109.47654 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47560 * 300.00414 * 7 5 4 29 29 H 1.09002 * 109.46556 * 60.00443 * 7 5 4 30 30 H 1.08999 * 109.47294 * 300.00496 * 8 7 5 31 31 H 1.08998 * 109.47355 * 60.00027 * 8 7 5 32 32 H 0.96995 * 120.00429 * 180.02562 * 12 11 9 33 33 H 1.08002 * 120.09198 * 0.03340 * 20 19 17 34 34 H 1.07994 * 119.91964 * 180.28383 * 21 20 19 35 35 H 1.08001 * 119.81783 * 180.02562 * 22 21 20 36 36 H 1.08002 * 119.90871 * 180.02562 * 23 22 21 37 37 H 1.07998 * 120.08969 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6846 -1.1855 5 6 2.2171 0.0639 -2.2811 6 8 1.9983 1.2518 -2.2504 7 6 2.7193 -0.5773 -3.5491 8 6 2.8645 0.4889 -4.6368 9 6 3.3661 -0.1523 -5.9050 10 1 3.5622 -1.2139 -5.9323 11 6 3.5757 0.6166 -7.0301 12 7 3.3374 1.9095 -6.9967 13 14 4.1981 -0.1781 -8.6018 14 1 4.3872 -1.6340 -8.3791 15 1 3.2082 0.0324 -9.6886 16 1 5.4942 0.4358 -8.9871 17 6 2.0322 -0.7103 1.2306 18 8 2.4906 -1.8293 1.1400 19 6 1.9665 -0.0460 2.5421 20 6 2.4311 -0.7021 3.6864 21 6 2.3709 -0.0710 4.9109 22 6 1.8475 1.2065 5.0099 23 6 1.3813 1.8606 3.8828 24 6 1.4346 1.2428 2.6512 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 3.6884 -1.0403 -3.3631 29 1 2.0104 -1.3374 -3.8772 30 1 1.8956 0.9523 -4.8229 31 1 3.5735 1.2488 -4.3084 32 1 3.4845 2.4504 -7.7883 33 1 2.8403 -1.6988 3.6106 34 1 2.7335 -0.5744 5.7948 35 1 1.8034 1.6957 5.9718 36 1 0.9746 2.8575 3.9682 37 1 1.0708 1.7547 1.7726 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812615770.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:37 Heat of formation + Delta-G solvation = -127.374333 kcal Electronic energy + Delta-G solvation = -20222.199943 eV Core-core repulsion = 16928.651052 eV Total energy + Delta-G solvation = -3293.548891 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.98750 -40.88841 -39.23008 -37.69360 -35.67141 -34.03873 -33.07461 -31.98833 -31.53511 -28.13614 -26.60780 -24.85556 -23.78389 -23.21874 -21.51900 -20.90560 -19.29795 -18.41816 -18.22825 -17.56638 -17.45124 -16.66630 -16.48619 -16.13903 -16.04064 -15.34473 -15.18431 -14.89360 -14.59761 -14.30813 -14.15367 -13.95947 -13.53970 -13.41535 -13.27344 -12.90993 -12.84554 -12.54902 -12.50239 -12.08467 -12.04462 -11.95568 -11.76943 -11.53028 -11.29243 -10.80337 -10.59294 -10.02234 -10.00011 -8.21176 -6.34581 -0.47256 0.37689 1.12009 1.20680 1.41382 1.43588 1.47190 1.57848 2.41814 2.73266 2.77935 3.12651 3.59696 3.75257 3.81260 3.84543 3.96586 4.01049 4.21825 4.36763 4.40427 4.41679 4.46124 4.55294 4.59045 4.82759 4.87454 4.96984 5.03384 5.23297 5.30756 5.41340 5.45610 5.46569 5.53535 5.79260 5.90229 6.12080 6.22086 6.70401 6.83478 7.35449 8.91598 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.041318 B = 0.002966 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.502562 B = 9438.485220 C = 9687.086099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.029 3.971 3 H 0.114 0.886 4 O -0.347 6.347 5 C 0.466 3.534 6 O -0.532 6.532 7 C -0.096 4.096 8 C 0.041 3.959 9 C -0.545 4.545 10 H 0.074 0.926 11 C -0.003 4.003 12 N -0.934 5.934 13 Si 0.973 3.027 14 H -0.256 1.256 15 H -0.279 1.279 16 H -0.280 1.280 17 C 0.405 3.595 18 O -0.466 6.466 19 C -0.185 4.185 20 C -0.074 4.074 21 C -0.133 4.133 22 C -0.079 4.079 23 C -0.131 4.131 24 C -0.080 4.080 25 H 0.112 0.888 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.115 0.885 30 H -0.005 1.005 31 H -0.008 1.008 32 H 0.264 0.736 33 H 0.127 0.873 34 H 0.155 0.845 35 H 0.161 0.839 36 H 0.158 0.842 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.693 -2.289 25.946 26.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.027 4.027 3 H 0.131 0.869 4 O -0.264 6.264 5 C 0.311 3.689 6 O -0.421 6.421 7 C -0.133 4.133 8 C 0.003 3.997 9 C -0.582 4.582 10 H 0.093 0.907 11 C -0.201 4.201 12 N -0.573 5.573 13 Si 0.797 3.203 14 H -0.180 1.180 15 H -0.204 1.204 16 H -0.205 1.205 17 C 0.283 3.717 18 O -0.341 6.341 19 C -0.186 4.186 20 C -0.092 4.092 21 C -0.150 4.150 22 C -0.097 4.097 23 C -0.149 4.149 24 C -0.098 4.098 25 H 0.130 0.870 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.129 0.871 29 H 0.134 0.866 30 H 0.013 0.987 31 H 0.010 0.990 32 H 0.073 0.927 33 H 0.145 0.855 34 H 0.172 0.828 35 H 0.178 0.822 36 H 0.175 0.825 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.527 -2.385 25.842 26.534 hybrid contribution 0.306 0.136 -1.120 1.169 sum -5.221 -2.249 24.721 25.367 Atomic orbital electron populations 1.22150 0.89605 1.04464 1.05276 1.23286 0.98319 0.98500 0.82577 0.86870 1.86683 1.77241 1.42301 1.20169 1.24566 0.73053 0.85826 0.85437 1.90603 1.49177 1.17951 1.84349 1.21549 1.03642 1.00618 0.87514 1.18793 0.95747 0.93016 0.92104 1.21653 1.44629 0.95615 0.96352 0.90738 1.26067 0.95563 0.95310 1.03120 1.70149 1.49700 1.06828 1.30668 0.85273 0.77748 0.79138 0.78107 1.17972 1.20424 1.20535 1.22592 0.73668 0.86062 0.89351 1.90526 1.35165 1.20044 1.88400 1.20174 1.07849 0.97567 0.93026 1.21537 0.95598 0.99928 0.92131 1.21494 1.00159 0.96014 0.97382 1.21922 0.93551 0.94053 1.00127 1.21553 1.00119 1.01553 0.91683 1.21769 0.95517 0.92614 0.99906 0.86984 0.91152 0.90792 0.87103 0.86648 0.98684 0.98957 0.92681 0.85519 0.82774 0.82164 0.82464 0.84069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 9.33 71.98 0.67 -2.85 16 2 C 0.03 0.82 2.16 29.85 0.06 0.89 16 3 H 0.11 3.18 6.35 -2.39 -0.02 3.16 16 4 O -0.35 -12.49 9.46 -45.23 -0.43 -12.91 16 5 C 0.47 19.04 7.93 71.24 0.56 19.61 16 6 O -0.53 -24.32 15.20 21.97 0.33 -23.99 16 7 C -0.10 -4.05 5.75 29.85 0.17 -3.88 16 8 C 0.04 2.22 4.26 29.85 0.13 2.35 16 9 C -0.54 -30.86 9.11 25.60 0.23 -30.63 16 10 H 0.07 3.91 7.74 -2.91 -0.02 3.89 16 11 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 12 N -0.93 -58.00 13.29 21.45 0.28 -57.71 16 13 Si 0.97 44.17 29.54 68.60 2.03 46.20 16 14 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 15 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 17 C 0.41 11.18 6.42 28.03 0.18 11.36 16 18 O -0.47 -15.86 16.56 15.38 0.25 -15.61 16 19 C -0.19 -3.90 5.86 -20.15 -0.12 -4.02 16 20 C -0.07 -1.37 9.60 22.58 0.22 -1.15 16 21 C -0.13 -1.62 10.03 22.23 0.22 -1.40 16 22 C -0.08 -0.75 10.04 22.35 0.22 -0.52 16 23 C -0.13 -1.46 10.03 22.22 0.22 -1.24 16 24 C -0.08 -1.27 8.64 22.58 0.19 -1.08 16 25 H 0.11 1.72 6.63 -2.39 -0.02 1.70 16 26 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 27 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.11 4.30 8.14 -2.39 -0.02 4.28 16 29 H 0.12 4.37 8.14 -2.39 -0.02 4.36 16 30 H -0.01 -0.32 8.10 -2.39 -0.02 -0.34 16 31 H -0.01 -0.49 8.10 -2.39 -0.02 -0.51 16 32 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 33 H 0.13 2.46 7.65 -2.91 -0.02 2.44 16 34 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 35 H 0.16 0.50 8.06 -2.91 -0.02 0.47 16 36 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 37 H 0.14 1.97 5.93 -2.91 -0.02 1.96 16 Total: -1.00 -75.57 325.54 6.98 -68.59 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: 1.07 Total: 7.68 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 3.44 Total: -12.24 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.28 Total: -57.71 kcal Atomic # 8 Polarization: -52.67 SS G_CDS: 0.16 Total: -52.51 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -75.57 6.98 -68.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615770.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.781 kcal (2) G-P(sol) polarization free energy of solvation -75.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds