Wall clock time and date at job start Mon Mar 30 2020 01:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37907 * 120.08806 * 2 1 4 4 C 1.38383 * 120.16871 * 179.97438 * 3 2 1 5 5 C 1.38423 * 120.35161 * 359.97438 * 4 3 2 6 6 C 1.37870 * 120.17398 * 0.02562 * 5 4 3 7 7 C 1.39835 * 120.08229 * 179.97438 * 2 1 3 8 8 C 1.47163 * 120.17797 * 0.04554 * 7 2 1 9 9 O 1.21258 * 119.99354 * 353.95961 * 8 7 2 10 10 C 1.50696 * 120.00478 * 173.96285 * 8 7 2 11 11 O 1.45200 * 109.47361 * 179.97438 * 10 8 7 12 12 C 1.34226 * 116.99950 * 179.97438 * 11 10 8 13 13 O 1.20830 * 120.00149 * 0.02562 * 12 11 10 14 14 C 1.50700 * 120.00049 * 180.02562 * 12 11 10 15 15 C 1.52999 * 109.47038 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47038 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99731 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00414 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99605 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00389 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47156 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47119 * 119.99967 * 20 18 16 23 23 H 1.48507 * 109.47094 * 240.00213 * 20 18 16 24 24 H 1.08994 * 109.47555 * 263.38591 * 1 2 3 25 25 H 1.09000 * 109.46953 * 23.38643 * 1 2 3 26 26 H 1.09005 * 109.46831 * 143.38172 * 1 2 3 27 27 H 1.07996 * 119.91164 * 0.02562 * 3 2 1 28 28 H 1.07999 * 119.82159 * 180.02562 * 4 3 2 29 29 H 1.07995 * 119.91542 * 180.27972 * 5 4 3 30 30 H 1.07989 * 120.08893 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.47136 * 300.00227 * 10 8 7 32 32 H 1.09002 * 109.46842 * 59.99638 * 10 8 7 33 33 H 1.08999 * 109.46892 * 300.00199 * 14 12 11 34 34 H 1.08995 * 109.47015 * 60.00028 * 14 12 11 35 35 H 1.08999 * 109.47189 * 299.99708 * 15 14 12 36 36 H 1.08995 * 109.47447 * 59.99983 * 15 14 12 37 37 H 0.96996 * 119.99578 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1932 0.0000 4 6 3.5823 1.1952 0.0005 5 6 4.2834 0.0017 0.0016 6 6 3.6067 -1.1995 0.0016 7 6 2.2080 -1.2100 0.0005 8 6 1.4780 -2.4878 0.0001 9 8 0.2704 -2.4961 0.1098 10 6 2.2311 -3.7859 -0.1366 11 8 1.2938 -4.8945 -0.1086 12 6 1.8073 -6.1296 -0.2206 13 8 3.0006 -6.2795 -0.3376 14 6 0.8957 -7.3294 -0.2004 15 6 1.7283 -8.6050 -0.3431 16 6 0.8167 -9.8049 -0.3222 17 1 -0.2498 -9.6709 -0.2173 18 6 1.3441 -11.0736 -0.4372 19 7 2.6430 -11.2367 -0.5645 20 14 0.2143 -12.5609 -0.4106 21 1 -1.1926 -12.1110 -0.2567 22 1 0.3574 -13.3140 -1.6824 23 1 0.5798 -13.4400 0.7291 24 1 -0.3634 -0.1184 1.0207 25 1 -0.3633 0.9432 -0.4079 26 1 -0.3633 -0.8249 -0.6130 27 1 1.6584 2.1285 0.0004 28 1 4.1180 2.1329 0.0010 29 1 5.3633 0.0114 0.0066 30 1 4.1551 -2.1298 0.0029 31 1 2.7746 -3.7929 -1.0813 32 1 2.9360 -3.8856 0.6888 33 1 0.3503 -7.3555 0.7430 34 1 0.1885 -7.2623 -1.0271 35 1 2.2739 -8.5792 -1.2863 36 1 2.4352 -8.6719 0.4838 37 1 3.0140 -12.1292 -0.6457 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812616383.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:18 Heat of formation + Delta-G solvation = -108.035999 kcal Electronic energy + Delta-G solvation = -19945.441575 eV Core-core repulsion = 16652.731258 eV Total energy + Delta-G solvation = -3292.710318 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.69582 -39.83095 -38.35620 -36.07758 -33.59645 -33.07590 -32.17715 -31.17787 -29.00066 -27.17734 -25.84737 -24.00588 -22.40763 -21.61990 -20.20103 -19.84366 -17.58859 -16.94881 -16.58817 -16.55462 -16.04055 -15.80837 -15.29248 -15.01581 -14.49762 -14.43174 -13.93006 -13.87411 -13.49885 -13.13799 -12.46382 -12.38153 -12.37357 -12.24816 -12.15799 -12.06393 -11.44483 -11.21488 -10.97816 -10.62814 -10.56166 -10.05951 -10.01749 -9.76039 -9.50463 -9.36969 -9.16644 -9.10368 -8.38363 -6.02135 -4.06722 0.32520 0.97138 2.09816 2.74618 2.75516 3.31107 3.38436 3.38773 3.42496 3.88579 4.36402 4.44693 4.46474 4.60636 4.76519 4.92929 5.02728 5.04988 5.11091 5.30008 5.33560 5.41677 5.47571 5.52823 5.57924 5.87227 5.94456 6.03882 6.12175 6.18844 6.21413 6.50256 6.56540 6.86935 7.28076 7.66045 7.72149 7.97300 8.20740 8.37287 9.00506 9.57449 11.08973 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.045540 B = 0.002768 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.691887 B =10114.108965 C =10694.403179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.021 4.021 3 C -0.137 4.137 4 C -0.084 4.084 5 C -0.139 4.139 6 C -0.069 4.069 7 C -0.168 4.168 8 C 0.394 3.606 9 O -0.421 6.421 10 C 0.018 3.982 11 O -0.348 6.348 12 C 0.457 3.543 13 O -0.505 6.505 14 C -0.102 4.102 15 C 0.033 3.967 16 C -0.527 4.527 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.896 3.104 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.078 0.922 25 H 0.061 0.939 26 H 0.093 0.907 27 H 0.129 0.871 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.135 0.865 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.957 26.184 1.161 26.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.021 4.021 3 C -0.155 4.155 4 C -0.102 4.102 5 C -0.157 4.157 6 C -0.088 4.088 7 C -0.169 4.169 8 C 0.271 3.729 9 O -0.295 6.295 10 C -0.057 4.057 11 O -0.265 6.265 12 C 0.301 3.699 13 O -0.392 6.392 14 C -0.140 4.140 15 C -0.005 4.005 16 C -0.565 4.565 17 H 0.078 0.922 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.724 3.276 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.097 0.903 25 H 0.080 0.920 26 H 0.111 0.889 27 H 0.147 0.853 28 H 0.145 0.855 29 H 0.148 0.852 30 H 0.152 0.848 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.816 26.014 1.166 26.053 hybrid contribution -0.043 -0.746 -0.005 0.748 sum 0.773 25.267 1.161 25.306 Atomic orbital electron populations 1.21143 0.90021 1.03306 1.03773 1.20231 0.96860 0.91712 0.93321 1.21082 0.94336 0.97536 1.02528 1.21434 0.94260 0.98446 0.96044 1.21143 1.00447 0.92145 1.01930 1.21537 0.92784 0.99168 0.95271 1.20142 0.94276 0.93680 1.08821 1.22191 0.89035 0.88748 0.72974 1.90520 1.15761 1.88912 1.34271 1.23142 0.92826 0.84891 1.04815 1.86668 1.40209 1.15244 1.84413 1.24932 0.89786 0.83614 0.71546 1.90636 1.17453 1.86104 1.44965 1.21791 0.98296 0.89605 1.04272 1.19037 0.94735 0.87875 0.98805 1.21197 0.93557 0.90837 1.50954 0.92202 1.25026 0.95073 0.99166 0.95122 1.70005 1.10870 1.22455 1.49515 0.86478 0.80900 0.82651 0.77615 1.19622 1.20962 1.20967 0.90304 0.91997 0.88862 0.85309 0.85479 0.85180 0.84755 0.87989 0.88002 0.88757 0.88754 0.95539 0.95544 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 8.74 36.01 0.31 -0.87 16 2 C -0.02 -0.20 5.92 -104.14 -0.62 -0.82 16 3 C -0.14 -1.05 9.66 -39.65 -0.38 -1.43 16 4 C -0.08 -0.57 10.04 -39.46 -0.40 -0.96 16 5 C -0.14 -1.00 10.03 -39.65 -0.40 -1.39 16 6 C -0.07 -0.60 9.47 -39.10 -0.37 -0.97 16 7 C -0.17 -1.77 5.87 -105.06 -0.62 -2.39 16 8 C 0.39 5.03 7.13 -30.69 -0.22 4.81 16 9 O -0.42 -6.40 13.49 -14.09 -0.19 -6.59 16 10 C 0.02 0.24 4.64 36.00 0.17 0.41 16 11 O -0.35 -6.03 9.76 -45.89 -0.45 -6.48 16 12 C 0.46 9.06 7.96 36.01 0.29 9.35 16 13 O -0.51 -11.19 15.73 -18.75 -0.29 -11.49 16 14 C -0.10 -2.12 5.75 -27.88 -0.16 -2.28 16 15 C 0.03 0.86 4.26 -27.88 -0.12 0.74 16 16 C -0.53 -14.80 9.11 -34.44 -0.31 -15.11 16 17 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -27.01 13.29 55.43 0.74 -26.28 16 20 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.45 8.04 -51.93 -0.42 0.03 16 26 H 0.09 1.05 5.86 -51.93 -0.30 0.75 16 27 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 28 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 29 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 30 H 0.13 0.96 6.99 -52.49 -0.37 0.60 16 31 H 0.10 1.23 8.13 -51.93 -0.42 0.80 16 32 H 0.10 1.21 7.90 -51.93 -0.41 0.80 16 33 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 34 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 35 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 36 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 324.93 15.07 4.90 4.90 Total: -1.00 -33.69 324.93 -8.08 -41.77 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -4.84 Total: -2.99 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -2.92 Total: -9.35 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.93 Total: -24.56 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.69 -8.08 -41.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616383.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.267 kcal (2) G-P(sol) polarization free energy of solvation -33.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds