Wall clock time and date at job start Mon Mar 30 2020 01:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37907 * 120.08806 * 2 1 4 4 C 1.38383 * 120.16871 * 179.97438 * 3 2 1 5 5 C 1.38423 * 120.35161 * 359.97438 * 4 3 2 6 6 C 1.37870 * 120.17398 * 0.02562 * 5 4 3 7 7 C 1.39835 * 120.08229 * 179.97438 * 2 1 3 8 8 C 1.47163 * 120.17797 * 0.04554 * 7 2 1 9 9 O 1.21258 * 119.99354 * 353.95961 * 8 7 2 10 10 C 1.50696 * 120.00478 * 173.96285 * 8 7 2 11 11 O 1.45200 * 109.47361 * 179.97438 * 10 8 7 12 12 C 1.34226 * 116.99950 * 179.97438 * 11 10 8 13 13 O 1.20830 * 120.00149 * 0.02562 * 12 11 10 14 14 C 1.50700 * 120.00049 * 180.02562 * 12 11 10 15 15 C 1.52999 * 109.47038 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47038 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99731 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00414 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99605 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00389 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47156 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47119 * 119.99967 * 20 18 16 23 23 H 1.48507 * 109.47094 * 240.00213 * 20 18 16 24 24 H 1.08994 * 109.47555 * 263.38591 * 1 2 3 25 25 H 1.09000 * 109.46953 * 23.38643 * 1 2 3 26 26 H 1.09005 * 109.46831 * 143.38172 * 1 2 3 27 27 H 1.07996 * 119.91164 * 0.02562 * 3 2 1 28 28 H 1.07999 * 119.82159 * 180.02562 * 4 3 2 29 29 H 1.07995 * 119.91542 * 180.27972 * 5 4 3 30 30 H 1.07989 * 120.08893 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.47136 * 300.00227 * 10 8 7 32 32 H 1.09002 * 109.46842 * 59.99638 * 10 8 7 33 33 H 1.08999 * 109.46892 * 300.00199 * 14 12 11 34 34 H 1.08995 * 109.47015 * 60.00028 * 14 12 11 35 35 H 1.08999 * 109.47189 * 299.99708 * 15 14 12 36 36 H 1.08995 * 109.47447 * 59.99983 * 15 14 12 37 37 H 0.96996 * 119.99578 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1932 0.0000 4 6 3.5823 1.1952 0.0005 5 6 4.2834 0.0017 0.0016 6 6 3.6067 -1.1995 0.0016 7 6 2.2080 -1.2100 0.0005 8 6 1.4780 -2.4878 0.0001 9 8 0.2704 -2.4961 0.1098 10 6 2.2311 -3.7859 -0.1366 11 8 1.2938 -4.8945 -0.1086 12 6 1.8073 -6.1296 -0.2206 13 8 3.0006 -6.2795 -0.3376 14 6 0.8957 -7.3294 -0.2004 15 6 1.7283 -8.6050 -0.3431 16 6 0.8167 -9.8049 -0.3222 17 1 -0.2498 -9.6709 -0.2173 18 6 1.3441 -11.0736 -0.4372 19 7 2.6430 -11.2367 -0.5645 20 14 0.2143 -12.5609 -0.4106 21 1 -1.1926 -12.1110 -0.2567 22 1 0.3574 -13.3140 -1.6824 23 1 0.5798 -13.4400 0.7291 24 1 -0.3634 -0.1184 1.0207 25 1 -0.3633 0.9432 -0.4079 26 1 -0.3633 -0.8249 -0.6130 27 1 1.6584 2.1285 0.0004 28 1 4.1180 2.1329 0.0010 29 1 5.3633 0.0114 0.0066 30 1 4.1551 -2.1298 0.0029 31 1 2.7746 -3.7929 -1.0813 32 1 2.9360 -3.8856 0.6888 33 1 0.3503 -7.3555 0.7430 34 1 0.1885 -7.2623 -1.0271 35 1 2.2739 -8.5792 -1.2863 36 1 2.4352 -8.6719 0.4838 37 1 3.0140 -12.1292 -0.6457 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812616383.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:18 Heat of formation + Delta-G solvation = -126.120398 kcal Electronic energy + Delta-G solvation = -19946.225774 eV Core-core repulsion = 16652.731258 eV Total energy + Delta-G solvation = -3293.494516 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.83600 -41.04535 -39.23045 -37.57432 -35.66173 -33.74830 -33.24218 -32.85225 -30.05722 -28.16552 -27.54357 -24.87114 -24.06456 -22.47265 -21.50233 -21.05623 -19.18086 -18.25964 -17.92543 -17.91813 -17.26958 -16.55681 -16.49578 -16.36946 -16.21370 -15.28066 -15.10991 -14.99286 -14.33877 -14.29185 -14.08855 -13.82162 -13.71359 -13.20211 -13.09341 -13.01123 -12.86411 -12.69248 -12.49436 -12.04597 -12.03348 -11.89276 -11.77552 -11.52790 -11.28590 -10.61336 -10.58849 -10.01115 -9.73839 -8.20816 -6.34092 -0.42286 0.36764 1.15505 1.25518 1.40266 1.44013 1.46105 1.58194 2.42283 2.74423 2.83758 3.13123 3.66959 3.82570 3.88543 3.97782 4.02393 4.06711 4.13597 4.37123 4.40613 4.42635 4.48958 4.71311 4.75498 4.77962 4.86934 4.98822 5.20041 5.24578 5.32683 5.46273 5.47134 5.54295 5.54584 5.80021 5.92320 6.12718 6.31648 6.71505 6.84284 7.35950 8.92001 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.045540 B = 0.002768 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.691887 B =10114.108965 C =10694.403179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.037 4.037 3 C -0.139 4.139 4 C -0.076 4.076 5 C -0.140 4.140 6 C -0.076 4.076 7 C -0.190 4.190 8 C 0.400 3.600 9 O -0.455 6.455 10 C 0.009 3.991 11 O -0.349 6.349 12 C 0.468 3.532 13 O -0.535 6.535 14 C -0.095 4.095 15 C 0.039 3.961 16 C -0.544 4.544 17 H 0.075 0.925 18 C -0.003 4.003 19 N -0.934 5.934 20 Si 0.974 3.026 21 H -0.256 1.256 22 H -0.279 1.279 23 H -0.279 1.279 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.152 0.848 28 H 0.159 0.841 29 H 0.155 0.845 30 H 0.144 0.856 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.114 0.886 35 H -0.007 1.007 36 H -0.007 1.007 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.595 27.869 1.300 27.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.038 4.038 3 C -0.157 4.157 4 C -0.093 4.093 5 C -0.158 4.158 6 C -0.094 4.094 7 C -0.191 4.191 8 C 0.279 3.721 9 O -0.331 6.331 10 C -0.065 4.065 11 O -0.266 6.266 12 C 0.313 3.687 13 O -0.424 6.424 14 C -0.132 4.132 15 C 0.002 3.998 16 C -0.582 4.582 17 H 0.093 0.907 18 C -0.201 4.201 19 N -0.574 5.574 20 Si 0.798 3.202 21 H -0.179 1.179 22 H -0.205 1.205 23 H -0.205 1.205 24 H 0.090 0.910 25 H 0.102 0.898 26 H 0.088 0.912 27 H 0.170 0.830 28 H 0.177 0.823 29 H 0.173 0.827 30 H 0.161 0.839 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.012 0.988 36 H 0.012 0.988 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.441 27.732 1.308 27.767 hybrid contribution 0.162 -1.105 -0.050 1.118 sum 0.603 26.627 1.258 26.663 Atomic orbital electron populations 1.21075 0.90371 1.03482 1.03035 1.20404 0.96958 0.92348 0.94062 1.21382 0.95051 0.97526 1.01739 1.21867 0.94015 0.99654 0.93800 1.21509 1.01815 0.91669 1.00816 1.21733 0.92032 1.00513 0.95097 1.20037 0.95076 0.92633 1.11362 1.22380 0.88636 0.89255 0.71837 1.90518 1.16959 1.89277 1.36391 1.23553 0.92749 0.83830 1.06336 1.86609 1.41112 1.15153 1.83746 1.24540 0.88917 0.84344 0.70917 1.90625 1.18553 1.86703 1.46512 1.21537 0.97781 0.87785 1.06141 1.18807 0.94511 0.90817 0.95680 1.21662 0.94481 0.91569 1.50466 0.90676 1.26077 0.96667 1.02867 0.94519 1.70156 1.13159 1.23431 1.50679 0.85271 0.79188 0.78134 0.77651 1.17924 1.20510 1.20526 0.90964 0.89810 0.91198 0.83028 0.82309 0.82700 0.83872 0.86567 0.86429 0.86788 0.86786 0.98833 0.98828 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.31 8.74 71.24 0.62 -1.69 16 2 C -0.04 -0.69 5.92 -19.55 -0.12 -0.81 16 3 C -0.14 -1.77 9.66 22.23 0.21 -1.56 16 4 C -0.08 -0.76 10.04 22.35 0.22 -0.53 16 5 C -0.14 -1.61 10.03 22.23 0.22 -1.39 16 6 C -0.08 -1.19 9.47 22.58 0.21 -0.97 16 7 C -0.19 -3.90 5.87 -20.15 -0.12 -4.02 16 8 C 0.40 10.32 7.13 28.03 0.20 10.52 16 9 O -0.46 -14.28 13.49 15.84 0.21 -14.07 16 10 C 0.01 0.25 4.64 71.23 0.33 0.58 16 11 O -0.35 -12.10 9.76 -45.02 -0.44 -12.54 16 12 C 0.47 18.69 7.96 71.24 0.57 19.26 16 13 O -0.53 -24.24 15.73 21.95 0.35 -23.90 16 14 C -0.10 -3.95 5.75 29.85 0.17 -3.78 16 15 C 0.04 2.13 4.26 29.85 0.13 2.25 16 16 C -0.54 -30.67 9.11 25.60 0.23 -30.43 16 17 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 18 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 19 N -0.93 -58.00 13.29 21.45 0.28 -57.72 16 20 Si 0.97 44.06 29.54 68.60 2.03 46.08 16 21 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 24 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.08 1.11 8.04 -2.39 -0.02 1.10 16 26 H 0.07 1.65 5.86 -2.38 -0.01 1.63 16 27 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 28 H 0.16 0.58 8.06 -2.91 -0.02 0.56 16 29 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 30 H 0.14 1.87 6.99 -2.92 -0.02 1.85 16 31 H 0.12 2.76 8.13 -2.39 -0.02 2.75 16 32 H 0.12 2.76 7.90 -2.39 -0.02 2.74 16 33 H 0.11 4.28 8.14 -2.39 -0.02 4.26 16 34 H 0.11 4.28 8.14 -2.39 -0.02 4.26 16 35 H -0.01 -0.41 8.10 -2.39 -0.02 -0.43 16 36 H -0.01 -0.40 8.10 -2.39 -0.02 -0.42 16 37 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -74.54 324.93 6.86 -67.68 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 1.07 Total: 6.76 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 3.36 Total: -12.29 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.28 Total: -57.72 kcal Atomic # 8 Polarization: -50.63 SS G_CDS: 0.12 Total: -50.51 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -74.54 6.86 -67.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616383.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.440 kcal (2) G-P(sol) polarization free energy of solvation -74.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds