Wall clock time and date at job start Mon Mar 30 2020 01:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38402 * 119.82806 * 2 1 4 4 C 1.37885 * 120.17407 * 180.28065 * 3 2 1 5 5 C 1.39851 * 119.82281 * 359.43610 * 4 3 2 6 6 C 1.47168 * 120.17582 * 180.29957 * 5 4 3 7 7 O 1.21262 * 119.99476 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00520 * 180.02562 * 6 5 4 9 9 O 1.45197 * 109.46972 * 180.02562 * 8 6 5 10 10 C 1.34237 * 116.99665 * 180.02562 * 9 8 6 11 11 O 1.20826 * 119.99980 * 359.97438 * 10 9 8 12 12 C 1.50697 * 119.99656 * 180.02562 * 10 9 8 13 13 C 1.53005 * 109.47064 * 179.97438 * 12 10 9 14 14 C 1.50691 * 109.47369 * 179.97438 * 13 12 10 15 15 H 1.08004 * 120.00083 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00080 * 180.02562 * 14 13 12 17 17 N 1.31521 * 120.00111 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00206 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.46471 * 89.99886 * 18 16 14 20 20 H 1.48495 * 109.47139 * 209.99810 * 18 16 14 21 21 H 1.48500 * 109.46715 * 330.00592 * 18 16 14 22 22 C 1.39853 * 119.65985 * 0.28751 * 5 4 3 23 23 C 1.37892 * 119.82327 * 359.97438 * 22 5 4 24 24 H 1.08999 * 109.47370 * 270.27837 * 1 2 3 25 25 H 1.09002 * 109.46875 * 30.28498 * 1 2 3 26 26 H 1.09007 * 109.47167 * 150.27884 * 1 2 3 27 27 H 1.07998 * 119.91183 * 359.97438 * 3 2 1 28 28 H 1.08002 * 120.09199 * 179.72215 * 4 3 2 29 29 H 1.08994 * 109.47311 * 300.00700 * 8 6 5 30 30 H 1.09003 * 109.46942 * 60.00429 * 8 6 5 31 31 H 1.08998 * 109.47316 * 299.99871 * 12 10 9 32 32 H 1.09002 * 109.47826 * 59.99800 * 12 10 9 33 33 H 1.08998 * 109.47265 * 300.00290 * 13 12 10 34 34 H 1.09003 * 109.47105 * 59.99738 * 13 12 10 35 35 H 0.96993 * 120.00165 * 179.97438 * 17 16 14 36 36 H 1.08001 * 120.09350 * 180.02562 * 22 5 4 37 37 H 1.07999 * 119.91308 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2007 0.0000 4 6 3.5742 1.2090 -0.0058 5 6 4.2770 0.0000 0.0002 6 6 5.7487 -0.0002 0.0007 7 8 6.3550 1.0500 -0.0037 8 6 6.5022 -1.3052 0.0066 9 8 7.9297 -1.0399 0.0065 10 6 8.7474 -2.1045 0.0109 11 8 8.2856 -3.2210 0.0152 12 6 10.2414 -1.9070 0.0117 13 6 10.9360 -3.2702 0.0177 14 6 12.4300 -3.0728 0.0179 15 1 12.8428 -2.0748 0.0145 16 6 13.2698 -4.1663 0.0223 17 7 14.5737 -3.9940 0.0230 18 14 12.5559 -5.8924 0.0274 19 1 12.3681 -6.3544 -1.3714 20 1 13.4865 -6.8109 0.7313 21 1 11.2455 -5.8840 0.7260 22 6 3.5742 -1.2091 0.0060 23 6 2.1953 -1.2008 0.0063 24 1 -0.3634 0.0050 1.0276 25 1 -0.3633 0.8874 -0.5183 26 1 -0.3634 -0.8925 -0.5095 27 1 1.6511 2.1335 -0.0004 28 1 4.1100 2.1467 -0.0104 29 1 6.2385 -1.8730 0.8988 30 1 6.2392 -1.8806 -0.8811 31 1 10.5352 -1.3530 -0.8798 32 1 10.5335 -1.3469 0.9001 33 1 10.6422 -3.8238 0.9094 34 1 10.6441 -3.8307 -0.8705 35 1 15.1646 -4.7632 0.0264 36 1 4.1099 -2.1469 0.0110 37 1 1.6511 -2.1336 0.0112 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812617858.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:20 Heat of formation + Delta-G solvation = -110.713838 kcal Electronic energy + Delta-G solvation = -19689.936992 eV Core-core repulsion = 16397.110554 eV Total energy + Delta-G solvation = -3292.826437 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.63977 -39.89748 -38.59141 -36.19804 -33.64201 -33.47217 -31.63532 -31.42452 -29.68934 -27.49680 -26.14504 -23.09088 -22.91284 -21.78857 -20.16923 -19.87099 -17.82919 -17.01200 -16.87215 -16.65507 -16.17014 -15.69366 -15.28647 -15.00475 -14.52228 -14.22270 -14.15727 -14.00891 -13.88805 -13.52656 -12.75057 -12.70036 -12.50809 -12.36917 -12.27525 -12.07127 -11.49199 -11.44095 -11.03405 -10.67957 -10.35005 -10.23766 -10.11744 -9.88370 -9.69639 -9.44468 -9.26186 -9.16798 -8.55876 -6.07082 -4.07091 0.24558 0.93966 2.02851 2.60943 2.64590 3.33778 3.34300 3.40712 3.49283 3.80510 4.28590 4.35156 4.45788 4.51571 4.67213 4.85492 4.95149 4.95418 4.98899 5.09194 5.17983 5.25985 5.27309 5.35049 5.55643 5.56494 5.83615 5.93782 5.99412 6.02035 6.06780 6.41640 6.43747 6.69729 7.20132 7.22468 7.29791 7.70045 8.11711 8.46911 8.95536 9.54305 11.05494 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.044417 B = 0.002734 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.238125 B =10239.469649 C =10838.656519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.055 4.055 3 C -0.134 4.134 4 C -0.054 4.054 5 C -0.169 4.169 6 C 0.396 3.604 7 O -0.425 6.425 8 C 0.018 3.982 9 O -0.345 6.345 10 C 0.459 3.541 11 O -0.511 6.511 12 C -0.095 4.095 13 C -0.002 4.002 14 C -0.527 4.527 15 H 0.076 0.924 16 C 0.070 3.930 17 N -0.900 5.900 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.262 1.262 22 C -0.070 4.070 23 C -0.133 4.133 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.130 0.870 28 H 0.136 0.864 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.026 0.974 34 H 0.021 0.979 35 H 0.264 0.736 36 H 0.135 0.865 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.594 8.143 0.015 30.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.055 4.055 3 C -0.152 4.152 4 C -0.072 4.072 5 C -0.170 4.170 6 C 0.272 3.728 7 O -0.298 6.298 8 C -0.057 4.057 9 O -0.262 6.262 10 C 0.303 3.697 11 O -0.398 6.398 12 C -0.132 4.132 13 C -0.039 4.039 14 C -0.565 4.565 15 H 0.094 0.906 16 C -0.132 4.132 17 N -0.538 5.538 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.186 1.186 22 C -0.088 4.088 23 C -0.151 4.151 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.148 0.852 28 H 0.154 0.846 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.044 0.956 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.152 0.848 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -29.255 8.276 0.016 30.403 hybrid contribution -0.396 -1.183 -0.019 1.248 sum -29.650 7.093 -0.003 30.487 Atomic orbital electron populations 1.20898 0.90734 1.03282 1.02821 1.20259 0.96509 0.93190 0.95554 1.21048 0.93839 0.97959 1.02330 1.21408 0.94064 0.97762 0.93936 1.20271 0.93723 0.94728 1.08308 1.22219 0.88193 0.89828 0.72605 1.90572 1.70819 1.34237 1.34173 1.23169 0.80307 0.97255 1.04970 1.86672 1.16254 1.38568 1.84735 1.24896 0.91410 0.82140 0.71229 1.90618 1.77876 1.25681 1.45646 1.21574 0.82752 1.03766 1.05149 1.19491 0.95923 0.90567 0.97931 1.21030 0.88366 0.95291 1.51816 0.90590 1.24965 0.94683 0.99266 0.94256 1.69905 1.02417 1.30919 1.50586 0.86791 0.79583 0.84383 0.78752 1.20173 1.21321 1.18613 1.21528 0.94565 0.97341 0.95338 1.21051 0.93931 0.97975 1.02095 0.90573 0.91126 0.91081 0.85225 0.84585 0.87888 0.87879 0.88101 0.88074 0.95572 0.96023 0.92592 0.84751 0.85151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.49 10.00 36.00 0.36 -0.13 16 2 C -0.05 -0.36 5.89 -104.50 -0.62 -0.98 16 3 C -0.13 -0.97 9.68 -39.65 -0.38 -1.35 16 4 C -0.05 -0.49 9.60 -39.11 -0.38 -0.86 16 5 C -0.17 -1.69 5.87 -105.06 -0.62 -2.31 16 6 C 0.40 4.95 7.20 -30.69 -0.22 4.73 16 7 O -0.43 -6.69 16.50 -14.09 -0.23 -6.93 16 8 C 0.02 0.23 4.56 36.00 0.16 0.39 16 9 O -0.34 -5.78 9.76 -45.92 -0.45 -6.23 16 10 C 0.46 8.62 7.96 36.00 0.29 8.90 16 11 O -0.51 -10.56 15.73 -18.75 -0.29 -10.86 16 12 C -0.09 -1.89 5.75 -27.88 -0.16 -2.05 16 13 C 0.00 -0.04 3.33 -27.88 -0.09 -0.13 16 14 C -0.53 -14.95 9.66 -34.44 -0.33 -15.28 16 15 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 17 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 18 Si 0.88 22.12 27.47 -169.99 -4.67 17.45 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 22 C -0.07 -0.56 9.47 -39.10 -0.37 -0.93 16 23 C -0.13 -0.91 9.68 -39.64 -0.38 -1.30 16 24 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 26 H 0.07 0.24 8.08 -51.92 -0.42 -0.18 16 27 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 28 H 0.14 1.22 7.65 -52.49 -0.40 0.82 16 29 H 0.10 1.15 8.08 -51.93 -0.42 0.73 16 30 H 0.10 1.15 8.08 -51.93 -0.42 0.73 16 31 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 32 H 0.10 1.89 8.14 -51.93 -0.42 1.46 16 33 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 34 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.13 0.87 7.05 -52.49 -0.37 0.50 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 LS Contribution 326.82 15.07 4.93 4.93 Total: -1.00 -34.33 326.82 -7.70 -42.02 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -4.91 Total: -4.14 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -2.84 Total: -9.34 kcal Atomic # 7 Polarization: -27.68 SS G_CDS: 0.77 Total: -26.91 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.98 Total: -24.01 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.67 Total: 17.45 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.33 -7.70 -42.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617858.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.689 kcal (2) G-P(sol) polarization free energy of solvation -34.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds