Wall clock time and date at job start Mon Mar 30 2020 01:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38402 * 119.82806 * 2 1 4 4 C 1.37885 * 120.17407 * 180.28065 * 3 2 1 5 5 C 1.39851 * 119.82281 * 359.43610 * 4 3 2 6 6 C 1.47168 * 120.17582 * 180.29957 * 5 4 3 7 7 O 1.21262 * 119.99476 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00520 * 180.02562 * 6 5 4 9 9 O 1.45197 * 109.46972 * 180.02562 * 8 6 5 10 10 C 1.34237 * 116.99665 * 180.02562 * 9 8 6 11 11 O 1.20826 * 119.99980 * 359.97438 * 10 9 8 12 12 C 1.50697 * 119.99656 * 180.02562 * 10 9 8 13 13 C 1.53005 * 109.47064 * 179.97438 * 12 10 9 14 14 C 1.50691 * 109.47369 * 179.97438 * 13 12 10 15 15 H 1.08004 * 120.00083 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00080 * 180.02562 * 14 13 12 17 17 N 1.31521 * 120.00111 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00206 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.46471 * 89.99886 * 18 16 14 20 20 H 1.48495 * 109.47139 * 209.99810 * 18 16 14 21 21 H 1.48500 * 109.46715 * 330.00592 * 18 16 14 22 22 C 1.39853 * 119.65985 * 0.28751 * 5 4 3 23 23 C 1.37892 * 119.82327 * 359.97438 * 22 5 4 24 24 H 1.08999 * 109.47370 * 270.27837 * 1 2 3 25 25 H 1.09002 * 109.46875 * 30.28498 * 1 2 3 26 26 H 1.09007 * 109.47167 * 150.27884 * 1 2 3 27 27 H 1.07998 * 119.91183 * 359.97438 * 3 2 1 28 28 H 1.08002 * 120.09199 * 179.72215 * 4 3 2 29 29 H 1.08994 * 109.47311 * 300.00700 * 8 6 5 30 30 H 1.09003 * 109.46942 * 60.00429 * 8 6 5 31 31 H 1.08998 * 109.47316 * 299.99871 * 12 10 9 32 32 H 1.09002 * 109.47826 * 59.99800 * 12 10 9 33 33 H 1.08998 * 109.47265 * 300.00290 * 13 12 10 34 34 H 1.09003 * 109.47105 * 59.99738 * 13 12 10 35 35 H 0.96993 * 120.00165 * 179.97438 * 17 16 14 36 36 H 1.08001 * 120.09350 * 180.02562 * 22 5 4 37 37 H 1.07999 * 119.91308 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2007 0.0000 4 6 3.5742 1.2090 -0.0058 5 6 4.2770 0.0000 0.0002 6 6 5.7487 -0.0002 0.0007 7 8 6.3550 1.0500 -0.0037 8 6 6.5022 -1.3052 0.0066 9 8 7.9297 -1.0399 0.0065 10 6 8.7474 -2.1045 0.0109 11 8 8.2856 -3.2210 0.0152 12 6 10.2414 -1.9070 0.0117 13 6 10.9360 -3.2702 0.0177 14 6 12.4300 -3.0728 0.0179 15 1 12.8428 -2.0748 0.0145 16 6 13.2698 -4.1663 0.0223 17 7 14.5737 -3.9940 0.0230 18 14 12.5559 -5.8924 0.0274 19 1 12.3681 -6.3544 -1.3714 20 1 13.4865 -6.8109 0.7313 21 1 11.2455 -5.8840 0.7260 22 6 3.5742 -1.2091 0.0060 23 6 2.1953 -1.2008 0.0063 24 1 -0.3634 0.0050 1.0276 25 1 -0.3633 0.8874 -0.5183 26 1 -0.3634 -0.8925 -0.5095 27 1 1.6511 2.1335 -0.0004 28 1 4.1100 2.1467 -0.0104 29 1 6.2385 -1.8730 0.8988 30 1 6.2392 -1.8806 -0.8811 31 1 10.5352 -1.3530 -0.8798 32 1 10.5335 -1.3469 0.9001 33 1 10.6422 -3.8238 0.9094 34 1 10.6441 -3.8307 -0.8705 35 1 15.1646 -4.7632 0.0264 36 1 4.1099 -2.1469 0.0110 37 1 1.6511 -2.1336 0.0112 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812617858.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:20 Heat of formation + Delta-G solvation = -129.561999 kcal Electronic energy + Delta-G solvation = -19690.754310 eV Core-core repulsion = 16397.110554 eV Total energy + Delta-G solvation = -3293.643755 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.81036 -40.92797 -39.44104 -37.60068 -35.64368 -34.09043 -33.46960 -32.18374 -30.64823 -28.60213 -27.55790 -24.06020 -23.67795 -23.13736 -21.50037 -20.97067 -19.44399 -18.55277 -17.97500 -17.93496 -17.39415 -16.35681 -16.27665 -16.22632 -16.15153 -15.35632 -15.07008 -14.96303 -14.72404 -14.55628 -14.48961 -13.87290 -13.81859 -13.31245 -13.02350 -12.93127 -12.88517 -12.60847 -12.26642 -12.04261 -11.98758 -11.92559 -11.79764 -11.58418 -11.43210 -10.92722 -10.78705 -10.02283 -9.76020 -8.31451 -6.36433 -0.47196 0.36798 1.12319 1.21930 1.35970 1.37309 1.41190 1.51473 2.35299 2.72433 2.79984 3.03646 3.65565 3.83138 3.88487 3.96229 3.99448 4.03259 4.07961 4.28991 4.35808 4.36435 4.40578 4.74322 4.76180 4.80868 4.84928 5.04545 5.16569 5.20735 5.26781 5.28513 5.35532 5.35990 5.55248 5.57784 5.89658 6.20986 6.27082 6.65126 6.74138 7.28560 8.84211 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.044417 B = 0.002734 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.238125 B =10239.469649 C =10838.656519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.051 4.051 3 C -0.138 4.138 4 C -0.067 4.067 5 C -0.191 4.191 6 C 0.404 3.596 7 O -0.471 6.471 8 C 0.009 3.991 9 O -0.352 6.352 10 C 0.472 3.528 11 O -0.531 6.531 12 C -0.094 4.094 13 C 0.004 3.996 14 C -0.534 4.534 15 H 0.048 0.952 16 C 0.011 3.989 17 N -0.944 5.944 18 Si 0.944 3.056 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.254 1.254 22 C -0.069 4.069 23 C -0.137 4.137 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.150 0.850 28 H 0.127 0.873 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.021 0.979 34 H 0.020 0.980 35 H 0.268 0.732 36 H 0.149 0.851 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.854 7.026 -0.012 33.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.051 4.051 3 C -0.156 4.156 4 C -0.086 4.086 5 C -0.192 4.192 6 C 0.283 3.717 7 O -0.347 6.347 8 C -0.064 4.064 9 O -0.269 6.269 10 C 0.317 3.683 11 O -0.420 6.420 12 C -0.131 4.131 13 C -0.034 4.034 14 C -0.572 4.572 15 H 0.066 0.934 16 C -0.186 4.186 17 N -0.584 5.584 18 Si 0.767 3.233 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.178 1.178 22 C -0.087 4.087 23 C -0.154 4.154 24 H 0.104 0.896 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.168 0.832 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.039 0.961 34 H 0.038 0.962 35 H 0.077 0.923 36 H 0.167 0.833 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -32.544 7.173 -0.012 33.325 hybrid contribution 0.496 -0.736 -0.010 0.888 sum -32.048 6.436 -0.022 32.688 Atomic orbital electron populations 1.20976 0.88638 1.04356 1.03725 1.20661 0.98075 0.92802 0.93536 1.21307 0.93058 0.99382 1.01836 1.21498 0.95114 0.97318 0.94627 1.20133 0.92065 0.96012 1.11008 1.22498 0.89344 0.88948 0.70933 1.90559 1.71781 1.35417 1.36963 1.23589 0.77784 0.98152 1.06922 1.86618 1.18424 1.37639 1.84189 1.24338 0.91052 0.82069 0.70825 1.90606 1.78203 1.26377 1.46792 1.21364 0.83955 1.01442 1.06342 1.19323 0.93651 0.93013 0.97403 1.21344 0.90709 0.94175 1.50985 0.93388 1.25871 0.94978 1.03753 0.94044 1.70033 1.03889 1.32357 1.52092 0.85751 0.79057 0.79186 0.79276 1.19168 1.20527 1.17821 1.21736 0.95313 0.97058 0.94628 1.21402 0.93549 0.99217 1.01268 0.89568 0.90216 0.89946 0.83228 0.85462 0.85906 0.85878 0.87028 0.87046 0.96060 0.96187 0.92286 0.83294 0.82682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.57 10.00 71.23 0.71 0.14 16 2 C -0.05 -0.53 5.89 -19.79 -0.12 -0.65 16 3 C -0.14 -1.75 9.68 22.23 0.22 -1.54 16 4 C -0.07 -1.20 9.60 22.58 0.22 -0.99 16 5 C -0.19 -3.67 5.87 -20.15 -0.12 -3.79 16 6 C 0.40 10.02 7.20 28.03 0.20 10.22 16 7 O -0.47 -15.24 16.50 15.83 0.26 -14.98 16 8 C 0.01 0.23 4.56 71.24 0.32 0.55 16 9 O -0.35 -11.48 9.76 -45.13 -0.44 -11.92 16 10 C 0.47 17.15 7.96 71.23 0.57 17.72 16 11 O -0.53 -21.04 15.73 21.96 0.35 -20.69 16 12 C -0.09 -3.66 5.75 29.85 0.17 -3.49 16 13 C 0.00 0.18 3.33 29.85 0.10 0.28 16 14 C -0.53 -30.63 9.66 25.60 0.25 -30.38 16 15 H 0.05 2.94 7.99 -2.91 -0.02 2.91 16 16 C 0.01 0.67 5.47 84.65 0.46 1.13 16 17 N -0.94 -58.91 13.96 21.45 0.30 -58.61 16 18 Si 0.94 45.34 27.47 68.60 1.88 47.23 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 21 H -0.25 -11.83 6.54 99.48 0.65 -11.18 16 22 C -0.07 -0.97 9.47 22.58 0.21 -0.76 16 23 C -0.14 -1.48 9.68 22.23 0.22 -1.26 16 24 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 25 H 0.08 0.26 8.08 -2.39 -0.02 0.25 16 26 H 0.08 0.24 8.08 -2.38 -0.02 0.22 16 27 H 0.15 1.20 8.06 -2.91 -0.02 1.17 16 28 H 0.13 2.40 7.65 -2.91 -0.02 2.37 16 29 H 0.12 2.50 8.08 -2.39 -0.02 2.48 16 30 H 0.12 2.50 8.08 -2.39 -0.02 2.48 16 31 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 32 H 0.11 4.10 8.14 -2.39 -0.02 4.09 16 33 H 0.02 1.04 7.16 -2.39 -0.02 1.02 16 34 H 0.02 0.96 7.53 -2.39 -0.02 0.94 16 35 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 36 H 0.15 1.54 7.05 -2.91 -0.02 1.52 16 37 H 0.16 0.89 8.06 -2.91 -0.02 0.86 16 Total: -1.00 -74.17 326.82 6.77 -67.39 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: 1.01 Total: 4.40 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: 3.41 Total: -12.81 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 0.30 Total: -58.61 kcal Atomic # 8 Polarization: -47.76 SS G_CDS: 0.17 Total: -47.59 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.88 Total: 47.23 kcal Total: -74.17 6.77 -67.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617858.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.168 kcal (2) G-P(sol) polarization free energy of solvation -74.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds