Wall clock time and date at job start Mon Mar 30 2020 01:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00338 * 2 1 4 4 H 1.48495 * 109.47366 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47007 * 300.00027 * 3 2 1 6 6 H 1.48494 * 109.47096 * 59.99789 * 3 2 1 7 7 C 1.37879 * 119.99624 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99710 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00278 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47158 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47235 * 179.97438 * 10 9 7 12 12 O 1.20834 * 119.99866 * 0.02562 * 11 10 9 13 13 O 1.34225 * 120.00302 * 179.97438 * 11 10 9 14 14 C 1.45197 * 117.00407 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.39456 * 29.88810 * 14 13 11 16 16 C 1.53062 * 109.43968 * 149.77255 * 14 13 11 17 17 C 1.53400 * 108.32402 * 168.23508 * 16 14 13 18 18 O 1.42828 * 108.37535 * 295.33447 * 17 16 14 19 19 C 1.35841 * 117.83787 * 49.30861 * 18 17 16 20 20 C 1.39147 * 118.49745 * 162.70991 * 19 18 17 21 21 C 1.37971 * 120.21443 * 179.58022 * 20 19 18 22 22 C 1.38293 * 119.95373 * 359.74089 * 21 20 19 23 23 C 1.38104 * 119.98680 * 0.59767 * 22 21 20 24 24 C 1.38373 * 121.80378 * 342.46847 * 19 18 17 25 25 H 0.96997 * 119.99258 * 0.02562 * 1 2 3 26 26 H 1.08992 * 109.47364 * 59.99893 * 9 7 2 27 27 H 1.09007 * 109.47014 * 299.99987 * 9 7 2 28 28 H 1.09001 * 109.47176 * 60.00325 * 10 9 7 29 29 H 1.08996 * 109.47571 * 299.99935 * 10 9 7 30 30 H 1.08998 * 109.68862 * 48.53033 * 16 14 13 31 31 H 1.09004 * 109.69294 * 287.94850 * 16 14 13 32 32 H 1.08998 * 109.68415 * 175.60753 * 17 16 14 33 33 H 1.09010 * 109.71347 * 55.07226 * 17 16 14 34 34 H 1.08007 * 119.89575 * 359.61275 * 20 19 18 35 35 H 1.07999 * 120.02272 * 179.97438 * 21 20 19 36 36 H 1.07998 * 120.00815 * 180.37242 * 22 21 20 37 37 H 1.08002 * 119.84618 * 179.78945 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4917 -4.9672 -0.0020 12 8 0.2834 -4.9672 -0.0030 13 8 2.1627 -6.1297 -0.0024 14 6 1.3720 -7.3474 -0.0035 15 1 0.4274 -7.1652 -0.5161 16 6 2.1408 -8.4534 -0.7304 17 6 1.4322 -9.7878 -0.4651 18 8 1.5231 -10.0761 0.9308 19 6 1.1787 -9.0950 1.8049 20 6 0.9073 -9.4460 3.1237 21 6 0.5626 -8.4768 4.0433 22 6 0.4917 -7.1512 3.6557 23 6 0.7536 -6.8001 2.3459 24 6 1.0980 -7.7689 1.4179 25 1 -0.4849 0.8401 -0.0004 26 1 0.6247 -2.5563 -0.8919 27 1 0.6240 -2.5575 0.8881 28 1 2.8712 -3.6048 0.8891 29 1 2.8726 -3.6041 -0.8909 30 1 3.1626 -8.4989 -0.3538 31 1 2.1521 -8.2500 -1.8013 32 1 1.9160 -10.5803 -1.0360 33 1 0.3846 -9.7123 -0.7570 34 1 0.9670 -10.4803 3.4287 35 1 0.3521 -8.7528 5.0660 36 1 0.2279 -6.3912 4.3761 37 1 0.6942 -5.7646 2.0449 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813080846.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:51 Heat of formation + Delta-G solvation = -129.430371 kcal Electronic energy + Delta-G solvation = -21009.588732 eV Core-core repulsion = 17715.950685 eV Total energy + Delta-G solvation = -3293.638047 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.29468 -41.04486 -38.52744 -37.87111 -35.68288 -34.43603 -33.09642 -31.67778 -31.27840 -28.30686 -26.55406 -24.78957 -24.19696 -23.43107 -21.59456 -21.15591 -19.32710 -18.90667 -18.26621 -17.96231 -17.51690 -16.93380 -16.72991 -16.49050 -15.98604 -15.45874 -15.05975 -14.77647 -14.58331 -14.36591 -14.21358 -14.18337 -13.57679 -13.29478 -13.01582 -12.89053 -12.78151 -12.51374 -12.46884 -12.07815 -12.03329 -11.87983 -11.77643 -11.47144 -11.39005 -11.25728 -10.60586 -9.94694 -9.26993 -8.22034 -6.35946 0.14499 0.32985 1.14797 1.42306 1.43310 1.56305 1.62601 2.25358 2.41737 2.70244 3.12046 3.37082 3.44907 3.57497 3.65332 3.91941 4.11397 4.14387 4.22630 4.37796 4.38471 4.39520 4.45781 4.48022 4.57536 4.78731 4.83017 4.88885 4.95807 5.19025 5.33627 5.37188 5.44414 5.49268 5.51244 5.72144 5.77907 6.10625 6.33445 6.71665 6.82738 7.34578 8.90824 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.029248 B = 0.003833 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.115878 B = 7303.111338 C = 7900.383202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.974 3.026 4 H -0.254 1.254 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.041 3.959 10 C -0.095 4.095 11 C 0.464 3.536 12 O -0.535 6.535 13 O -0.345 6.345 14 C 0.122 3.878 15 H 0.079 0.921 16 C -0.149 4.149 17 C 0.064 3.936 18 O -0.319 6.319 19 C 0.135 3.865 20 C -0.154 4.154 21 C -0.072 4.072 22 C -0.162 4.162 23 C -0.097 4.097 24 C -0.200 4.200 25 H 0.264 0.736 26 H -0.009 1.009 27 H -0.011 1.011 28 H 0.112 0.888 29 H 0.117 0.883 30 H 0.092 0.908 31 H 0.115 0.885 32 H 0.156 0.844 33 H 0.073 0.927 34 H 0.159 0.841 35 H 0.167 0.833 36 H 0.136 0.864 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.305 -21.948 2.804 22.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.798 3.202 4 H -0.177 1.177 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.582 4.582 8 H 0.095 0.905 9 C 0.003 3.997 10 C -0.132 4.132 11 C 0.309 3.691 12 O -0.425 6.425 13 O -0.262 6.262 14 C 0.067 3.933 15 H 0.097 0.903 16 C -0.186 4.186 17 C -0.010 4.010 18 O -0.234 6.234 19 C 0.090 3.910 20 C -0.172 4.172 21 C -0.089 4.089 22 C -0.180 4.180 23 C -0.115 4.115 24 C -0.201 4.201 25 H 0.073 0.927 26 H 0.010 0.990 27 H 0.008 0.992 28 H 0.130 0.870 29 H 0.135 0.865 30 H 0.110 0.890 31 H 0.133 0.867 32 H 0.173 0.827 33 H 0.091 0.909 34 H 0.177 0.823 35 H 0.184 0.816 36 H 0.154 0.846 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.869 -22.079 2.824 22.785 hybrid contribution -0.444 1.571 -0.244 1.650 sum 4.425 -20.508 2.580 21.138 Atomic orbital electron populations 1.70166 1.08223 1.27898 1.51210 1.26083 0.95713 1.03813 0.94420 0.85266 0.79282 0.78055 0.77625 1.17733 1.20522 1.20575 1.21658 0.94081 0.91264 1.51208 0.90525 1.18782 0.93567 0.91822 0.95492 1.21551 0.99447 0.86081 1.06164 1.24556 0.87399 0.86624 0.70533 1.90637 1.17206 1.88000 1.46631 1.86640 1.41308 1.14440 1.83776 1.21572 0.95693 0.82922 0.93084 0.90274 1.22363 1.00790 0.92598 1.02864 1.23301 1.01839 0.97329 0.78510 1.85971 1.82513 1.37252 1.17619 1.18797 0.95302 0.85702 0.91211 1.20977 1.03971 1.01972 0.90283 1.21368 0.95654 0.91211 1.00706 1.21311 1.03152 0.98176 0.95326 1.21089 0.97367 0.98474 0.94598 1.20130 1.09295 0.93861 0.96844 0.92724 0.99040 0.99212 0.86989 0.86458 0.88951 0.86689 0.82660 0.90872 0.82327 0.81571 0.84596 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.21 13.29 21.45 0.28 -57.92 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 3 Si 0.97 43.77 29.54 68.60 2.03 45.80 16 4 H -0.25 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 7 C -0.54 -30.55 9.11 25.60 0.23 -30.32 16 8 H 0.08 3.95 7.74 -2.91 -0.02 3.92 16 9 C 0.04 2.22 4.26 29.85 0.13 2.34 16 10 C -0.10 -3.93 5.75 29.85 0.17 -3.76 16 11 C 0.46 18.81 6.39 71.24 0.46 19.26 16 12 O -0.54 -25.32 13.96 21.94 0.31 -25.02 16 13 O -0.34 -11.79 9.65 -51.37 -0.50 -12.28 16 14 C 0.12 3.60 2.69 29.89 0.08 3.68 16 15 H 0.08 2.56 7.15 -2.39 -0.02 2.55 16 16 C -0.15 -2.89 5.85 30.75 0.18 -2.71 16 17 C 0.06 0.99 7.03 72.12 0.51 1.50 16 18 O -0.32 -6.85 10.27 -91.76 -0.94 -7.80 16 19 C 0.14 3.45 6.47 22.52 0.15 3.60 16 20 C -0.15 -3.27 9.94 22.42 0.22 -3.05 16 21 C -0.07 -1.48 10.04 22.22 0.22 -1.25 16 22 C -0.16 -4.33 10.04 22.25 0.22 -4.11 16 23 C -0.10 -3.24 9.13 22.30 0.20 -3.03 16 24 C -0.20 -6.09 5.58 -19.75 -0.11 -6.20 16 25 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 26 H -0.01 -0.54 8.10 -2.39 -0.02 -0.56 16 27 H -0.01 -0.64 8.10 -2.38 -0.02 -0.66 16 28 H 0.11 4.19 8.14 -2.39 -0.02 4.17 16 29 H 0.12 4.27 8.14 -2.39 -0.02 4.25 16 30 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.16 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 35 H 0.17 2.14 8.06 -2.91 -0.02 2.11 16 36 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 37 H 0.10 3.76 5.17 -2.91 -0.02 3.74 16 Total: -1.00 -73.93 313.37 5.37 -68.56 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 1.07 Total: 12.37 kcal Atomic # 6 Polarization: -26.84 SS G_CDS: 3.13 Total: -23.71 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: 0.28 Total: -57.92 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -1.13 Total: -45.09 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -73.93 5.37 -68.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813080846.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.870 kcal (2) G-P(sol) polarization free energy of solvation -73.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds